Wall clock time and date at job start Wed Apr 1 2020 02:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47326 * 2 1 4 4 C 1.37475 * 127.18251 * 269.24880 * 3 2 1 5 5 C 1.47986 * 126.47133 * 359.97280 * 4 3 2 6 6 C 1.41007 * 126.25734 * 15.02551 * 5 4 3 7 7 N 1.30638 * 108.08538 * 180.02562 * 6 5 4 8 8 N 1.39997 * 108.58502 * 359.97438 * 7 6 5 9 9 C 1.46496 * 125.86633 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47316 * 304.97720 * 9 8 7 11 11 C 1.47204 * 109.46950 * 179.97438 * 10 9 8 12 12 N 9.64649 * 105.63139 * 279.24835 * 2 1 3 13 13 C 1.34821 * 108.26164 * 359.73815 * 8 7 6 14 14 N 1.31218 * 107.05452 * 179.97438 * 4 3 2 15 15 N 1.28508 * 109.96275 * 0.02562 * 14 4 3 16 16 C 1.31203 * 110.10444 * 359.97438 * 15 14 4 17 17 N 1.38578 * 126.38146 * 179.97438 * 16 15 14 18 18 C 1.46899 * 111.00359 * 306.58609 * 17 16 15 19 19 C 1.46893 * 110.99773 * 70.54276 * 17 16 15 20 20 H 1.09002 * 109.47384 * 54.99828 * 19 17 16 21 21 C 1.53000 * 109.47363 * 295.00010 * 19 17 16 22 22 C 1.50703 * 109.47182 * 175.00069 * 19 17 16 23 23 H 1.07997 * 120.00086 * 359.97438 * 22 19 17 24 24 C 1.37879 * 120.00012 * 180.02562 * 22 19 17 25 25 N 1.31516 * 120.00078 * 359.97438 * 24 22 19 26 26 Si 1.86802 * 119.99724 * 179.97438 * 24 22 19 27 27 H 1.48507 * 109.46917 * 90.00197 * 26 24 22 28 28 H 1.48504 * 109.46997 * 209.99434 * 26 24 22 29 29 H 1.48489 * 109.47319 * 329.99918 * 26 24 22 30 30 H 1.09001 * 109.46587 * 299.99666 * 1 2 3 31 31 H 1.09005 * 109.47333 * 59.99523 * 1 2 3 32 32 H 1.08994 * 109.47220 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47180 * 240.00759 * 2 1 3 34 34 H 1.08993 * 109.47659 * 120.00623 * 2 1 3 35 35 H 1.08000 * 125.95887 * 359.97438 * 6 5 4 36 36 H 1.08996 * 109.47467 * 64.98025 * 9 8 7 37 37 H 1.09004 * 109.47326 * 184.97939 * 9 8 7 38 38 H 1.08996 * 109.47102 * 300.00529 * 10 9 8 39 39 H 1.08999 * 109.46987 * 60.00565 * 10 9 8 40 40 H 1.07993 * 126.21462 * 180.28473 * 13 8 7 41 41 H 1.09006 * 109.46585 * 55.60029 * 18 17 16 42 42 H 1.08999 * 109.47498 * 175.59745 * 18 17 16 43 43 H 1.08996 * 109.47022 * 295.60640 * 18 17 16 44 44 H 1.09003 * 109.47602 * 180.02562 * 21 19 17 45 45 H 1.09007 * 109.46860 * 299.99799 * 21 19 17 46 46 H 1.08996 * 109.47454 * 59.99821 * 21 19 17 47 47 H 0.96998 * 119.99455 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3089 2.1597 -1.0952 5 6 2.1881 1.7606 -2.5151 6 6 1.4873 0.6417 -3.0102 7 7 1.6132 0.6270 -4.3104 8 7 2.3913 1.7252 -4.6957 9 6 2.7676 2.0711 -6.0686 10 6 3.4626 0.8756 -6.7235 11 6 3.8401 1.2230 -8.1033 12 7 4.1292 1.4930 -9.1690 13 6 2.7303 2.4128 -3.5866 14 7 2.7135 3.3234 -0.6437 15 7 2.6966 3.3255 0.6413 16 6 2.2800 2.1646 1.0887 17 7 2.1335 1.8003 2.4177 18 6 3.3746 2.0348 3.1678 19 6 1.0034 2.5067 3.0356 20 1 0.1011 2.3311 2.4499 21 6 1.3007 4.0070 3.0766 22 6 0.7988 1.9966 4.4388 23 1 1.4435 1.2245 4.8321 24 6 -0.2121 2.5148 5.2201 25 7 -0.9975 3.4547 4.7411 26 14 -0.4662 1.8819 6.9592 27 1 0.3426 2.6933 7.9043 28 1 -1.9029 1.9883 7.3197 29 1 -0.0403 0.4615 7.0363 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 0.9423 -0.0783 -2.4177 36 1 1.8735 2.3276 -6.6368 37 1 3.4467 2.9236 -6.0555 38 1 4.3566 0.6191 -6.1553 39 1 2.7835 0.0231 -6.7368 40 1 3.3248 3.3136 -3.5512 41 1 3.6746 3.0769 3.0570 42 1 3.2089 1.8146 4.2224 43 1 4.1611 1.3872 2.7804 44 1 0.4624 4.5312 3.5355 45 1 2.2031 4.1827 3.6624 46 1 1.4487 4.3760 2.0618 47 1 -1.7085 3.8194 5.2910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650303132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:02 Heat of formation + Delta-G solvation = 205.347649 kcal Electronic energy + Delta-G solvation = -29629.835397 eV Core-core repulsion = 25659.101618 eV Total energy + Delta-G solvation = -3970.733778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44004 -41.40189 -37.52526 -37.17496 -35.50878 -34.76114 -32.88053 -31.40550 -30.97838 -30.27865 -28.88417 -27.97359 -25.43103 -25.32768 -25.11238 -23.82423 -22.46931 -21.66119 -20.80636 -20.11044 -19.21241 -18.38076 -17.39395 -16.60676 -16.33170 -16.02229 -15.81796 -15.38799 -15.18912 -14.96967 -14.63766 -14.44469 -14.02091 -13.69219 -13.68529 -13.36228 -13.17154 -13.06194 -12.84280 -12.81686 -12.44058 -12.29316 -12.12721 -11.86460 -11.46666 -11.34663 -11.22916 -11.15657 -11.05705 -10.93375 -10.78575 -10.54916 -10.20198 -10.14542 -9.93287 -9.82436 -9.75719 -9.46311 -8.89898 -8.46088 -7.96538 -7.62394 -6.07888 -4.14095 1.32731 1.80421 1.89038 2.20569 2.24903 2.69323 2.79105 3.27020 3.34095 3.36249 3.36617 3.54033 3.92704 4.16844 4.32872 4.42835 4.51116 4.58084 4.67276 4.74976 4.76783 4.92502 5.07297 5.12261 5.23321 5.24860 5.33349 5.41188 5.68331 5.77630 5.84063 5.99464 6.15806 6.24050 6.31448 6.40042 6.49878 6.53705 6.63978 6.85988 6.95233 7.06039 7.08583 7.17565 7.27561 7.53966 7.65459 7.75773 7.93003 8.25967 8.47205 8.89238 9.26246 9.50679 10.98668 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.002196 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.624868 B =12746.469591 C =13090.853414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 N -0.466 5.466 4 C 0.236 3.764 5 C -0.152 4.152 6 C 0.067 3.933 7 N -0.289 5.289 8 N -0.375 5.375 9 C 0.143 3.857 10 C -0.038 4.038 11 C 0.207 3.793 12 N -0.424 5.424 13 C 0.107 3.893 14 N -0.291 5.291 15 N -0.312 5.312 16 C 0.381 3.619 17 N -0.470 5.470 18 C 0.045 3.955 19 C 0.226 3.774 20 H 0.036 0.964 21 C -0.173 4.173 22 C -0.507 4.507 23 H 0.066 0.934 24 C 0.062 3.938 25 N -0.888 5.888 26 Si 0.900 3.100 27 H -0.280 1.280 28 H -0.287 1.287 29 H -0.273 1.273 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.189 0.811 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.189 0.811 41 H 0.040 0.960 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.521 -7.651 -17.724 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.014 4.014 3 N -0.159 5.159 4 C -0.030 4.030 5 C -0.166 4.166 6 C -0.122 4.122 7 N -0.109 5.109 8 N -0.156 5.156 9 C 0.020 3.980 10 C -0.078 4.078 11 C -0.112 4.112 12 N -0.100 5.100 13 C -0.042 4.042 14 N -0.133 5.133 15 N -0.156 5.156 16 C 0.025 3.975 17 N -0.196 5.196 18 C -0.103 4.103 19 C 0.121 3.879 20 H 0.054 0.946 21 C -0.233 4.233 22 C -0.546 4.546 23 H 0.084 0.916 24 C -0.140 4.140 25 N -0.526 5.526 26 Si 0.727 3.273 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.198 1.198 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.206 0.794 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.926 -6.814 -20.431 22.623 hybrid contribution -0.580 -0.505 2.237 2.366 sum 6.346 -7.319 -18.194 20.612 Atomic orbital electron populations 1.22215 0.93859 1.03176 1.03910 1.21854 0.95893 0.79245 1.04420 1.46396 1.50245 1.13456 1.05829 1.21436 1.04995 0.89460 0.87066 1.17321 1.10441 1.00546 0.88297 1.24182 0.98689 0.97715 0.91610 1.77219 1.13932 1.06022 1.13693 1.48291 1.40613 1.20755 1.05937 1.21544 1.01322 0.96890 0.78252 1.19483 1.03767 1.00331 0.84245 1.28804 0.93670 0.94021 0.94686 1.81336 1.08728 1.07752 1.12210 1.22536 0.98933 0.97943 0.84740 1.74232 1.18849 1.16258 1.03923 1.74669 1.21364 1.17112 1.02407 1.22828 0.98912 0.86249 0.89498 1.59394 1.08037 1.57991 0.94168 1.22244 0.88781 0.99759 0.99477 1.19388 0.85258 0.89117 0.94106 0.94574 1.22441 1.01745 0.99866 0.99203 1.21002 1.15567 1.21219 0.96782 0.91611 1.24911 0.95661 0.94942 0.98502 1.69911 1.18870 1.27000 1.36847 0.86474 0.77281 0.79233 0.84274 1.20657 1.21288 1.19814 0.90315 0.92324 0.90476 0.89561 0.87835 0.79432 0.88424 0.87218 0.86491 0.85712 0.79401 0.94090 0.89172 0.93774 0.89607 0.94957 0.94789 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.72 37.16 0.36 -1.71 16 2 C 0.11 1.33 6.12 -4.04 -0.02 1.31 16 3 N -0.47 -7.62 2.83 -114.61 -0.32 -7.94 16 4 C 0.24 3.77 7.91 -153.83 -1.22 2.55 16 5 C -0.15 -1.80 6.04 -105.43 -0.64 -2.44 16 6 C 0.07 0.66 10.66 -17.01 -0.18 0.48 16 7 N -0.29 -2.65 12.37 30.83 0.38 -2.27 16 8 N -0.37 -2.70 3.67 -61.05 -0.22 -2.93 16 9 C 0.14 0.48 6.45 -4.04 -0.03 0.46 16 10 C -0.04 -0.10 5.88 -29.51 -0.17 -0.27 16 11 C 0.21 1.15 15.44 -20.73 -0.32 0.83 16 12 N -0.42 -3.88 18.54 42.18 0.78 -3.10 16 13 C 0.11 0.97 11.40 -16.81 -0.19 0.78 16 14 N -0.29 -5.56 12.21 32.60 0.40 -5.16 16 15 N -0.31 -6.66 9.71 30.35 0.29 -6.37 16 16 C 0.38 7.62 6.21 -318.62 -1.98 5.64 16 17 N -0.47 -9.85 4.77 -176.03 -0.84 -10.69 16 18 C 0.04 0.87 8.67 60.06 0.52 1.39 16 19 C 0.23 5.53 2.32 -68.87 -0.16 5.37 16 20 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 21 C -0.17 -4.34 8.20 37.16 0.30 -4.03 16 22 C -0.51 -13.06 7.82 -34.44 -0.27 -13.33 16 23 H 0.07 1.66 6.80 -52.49 -0.36 1.30 16 24 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 25 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 26 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 0.67 7.29 -51.93 -0.38 0.29 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.79 6.00 -51.93 -0.31 0.47 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.19 1.57 4.94 -52.49 -0.26 1.31 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.11 0.15 8.07 -51.93 -0.42 -0.27 16 38 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.04 0.83 6.51 -51.93 -0.34 0.49 16 42 H 0.09 1.77 6.31 -51.93 -0.33 1.44 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 45 H 0.03 0.78 6.58 -51.92 -0.34 0.44 16 46 H 0.03 0.84 5.94 -51.93 -0.31 0.53 16 47 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -33.95 390.42 -8.43 -42.37 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.29 Total: 0.20 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -4.09 Total: -1.44 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 1.09 Total: -62.41 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.95 -8.43 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650303132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.720 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 205.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds