Wall clock time and date at job start Wed Apr 1 2020 02:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47326 * 2 1 4 4 C 1.37475 * 127.18251 * 269.24880 * 3 2 1 5 5 C 1.47986 * 126.47133 * 359.97280 * 4 3 2 6 6 C 1.41007 * 126.25734 * 15.02551 * 5 4 3 7 7 N 1.30638 * 108.08538 * 180.02562 * 6 5 4 8 8 N 1.39997 * 108.58502 * 359.97438 * 7 6 5 9 9 C 1.46496 * 125.86633 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47316 * 304.97720 * 9 8 7 11 11 C 1.47204 * 109.46950 * 179.97438 * 10 9 8 12 12 N 9.64649 * 105.63139 * 279.24835 * 2 1 3 13 13 C 1.34821 * 108.26164 * 359.73815 * 8 7 6 14 14 N 1.31218 * 107.05452 * 179.97438 * 4 3 2 15 15 N 1.28508 * 109.96275 * 0.02562 * 14 4 3 16 16 C 1.31203 * 110.10444 * 359.97438 * 15 14 4 17 17 N 1.38578 * 126.38146 * 179.97438 * 16 15 14 18 18 C 1.46899 * 111.00359 * 306.58609 * 17 16 15 19 19 C 1.46893 * 110.99773 * 70.54276 * 17 16 15 20 20 H 1.09002 * 109.47384 * 54.99828 * 19 17 16 21 21 C 1.53000 * 109.47363 * 295.00010 * 19 17 16 22 22 C 1.50703 * 109.47182 * 175.00069 * 19 17 16 23 23 H 1.07997 * 120.00086 * 359.97438 * 22 19 17 24 24 C 1.37879 * 120.00012 * 180.02562 * 22 19 17 25 25 N 1.31516 * 120.00078 * 359.97438 * 24 22 19 26 26 Si 1.86802 * 119.99724 * 179.97438 * 24 22 19 27 27 H 1.48507 * 109.46917 * 90.00197 * 26 24 22 28 28 H 1.48504 * 109.46997 * 209.99434 * 26 24 22 29 29 H 1.48489 * 109.47319 * 329.99918 * 26 24 22 30 30 H 1.09001 * 109.46587 * 299.99666 * 1 2 3 31 31 H 1.09005 * 109.47333 * 59.99523 * 1 2 3 32 32 H 1.08994 * 109.47220 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47180 * 240.00759 * 2 1 3 34 34 H 1.08993 * 109.47659 * 120.00623 * 2 1 3 35 35 H 1.08000 * 125.95887 * 359.97438 * 6 5 4 36 36 H 1.08996 * 109.47467 * 64.98025 * 9 8 7 37 37 H 1.09004 * 109.47326 * 184.97939 * 9 8 7 38 38 H 1.08996 * 109.47102 * 300.00529 * 10 9 8 39 39 H 1.08999 * 109.46987 * 60.00565 * 10 9 8 40 40 H 1.07993 * 126.21462 * 180.28473 * 13 8 7 41 41 H 1.09006 * 109.46585 * 55.60029 * 18 17 16 42 42 H 1.08999 * 109.47498 * 175.59745 * 18 17 16 43 43 H 1.08996 * 109.47022 * 295.60640 * 18 17 16 44 44 H 1.09003 * 109.47602 * 180.02562 * 21 19 17 45 45 H 1.09007 * 109.46860 * 299.99799 * 21 19 17 46 46 H 1.08996 * 109.47454 * 59.99821 * 21 19 17 47 47 H 0.96998 * 119.99455 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3089 2.1597 -1.0952 5 6 2.1881 1.7606 -2.5151 6 6 1.4873 0.6417 -3.0102 7 7 1.6132 0.6270 -4.3104 8 7 2.3913 1.7252 -4.6957 9 6 2.7676 2.0711 -6.0686 10 6 3.4626 0.8756 -6.7235 11 6 3.8401 1.2230 -8.1033 12 7 4.1292 1.4930 -9.1690 13 6 2.7303 2.4128 -3.5866 14 7 2.7135 3.3234 -0.6437 15 7 2.6966 3.3255 0.6413 16 6 2.2800 2.1646 1.0887 17 7 2.1335 1.8003 2.4177 18 6 3.3746 2.0348 3.1678 19 6 1.0034 2.5067 3.0356 20 1 0.1011 2.3311 2.4499 21 6 1.3007 4.0070 3.0766 22 6 0.7988 1.9966 4.4388 23 1 1.4435 1.2245 4.8321 24 6 -0.2121 2.5148 5.2201 25 7 -0.9975 3.4547 4.7411 26 14 -0.4662 1.8819 6.9592 27 1 0.3426 2.6933 7.9043 28 1 -1.9029 1.9883 7.3197 29 1 -0.0403 0.4615 7.0363 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 0.9423 -0.0783 -2.4177 36 1 1.8735 2.3276 -6.6368 37 1 3.4467 2.9236 -6.0555 38 1 4.3566 0.6191 -6.1553 39 1 2.7835 0.0231 -6.7368 40 1 3.3248 3.3136 -3.5512 41 1 3.6746 3.0769 3.0570 42 1 3.2089 1.8146 4.2224 43 1 4.1611 1.3872 2.7804 44 1 0.4624 4.5312 3.5355 45 1 2.2031 4.1827 3.6624 46 1 1.4487 4.3760 2.0618 47 1 -1.7085 3.8194 5.2910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650303132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:01 Heat of formation + Delta-G solvation = 185.703268 kcal Electronic energy + Delta-G solvation = -29630.687241 eV Core-core repulsion = 25659.101618 eV Total energy + Delta-G solvation = -3971.585623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.76130 -42.15390 -38.90265 -38.01150 -36.63047 -35.36151 -34.78082 -32.44472 -31.63404 -31.45601 -30.60967 -29.23499 -27.22804 -26.93748 -25.86250 -24.95725 -23.42787 -23.13745 -21.76132 -21.11058 -20.67937 -18.79822 -18.42279 -18.17539 -17.49063 -17.37631 -16.71183 -16.56715 -16.41099 -16.08125 -15.61101 -15.39275 -15.30070 -14.80673 -14.73639 -14.41888 -14.16802 -13.98122 -13.86629 -13.65686 -13.56804 -13.32547 -13.15725 -13.06533 -12.88296 -12.79969 -12.68085 -12.56584 -12.33196 -12.28607 -12.18151 -12.02487 -11.98996 -11.77873 -11.36720 -11.10197 -10.83356 -10.62687 -10.48945 -10.47232 -9.46184 -8.96834 -8.10077 -6.23145 0.42978 0.97129 1.21785 1.47320 1.48184 1.51107 1.56457 1.60150 1.77589 1.79292 2.30958 2.45528 2.97591 3.13573 3.20678 3.36836 3.62532 3.77751 3.88771 3.95098 4.02843 4.12425 4.25548 4.35351 4.35947 4.40518 4.46694 4.58441 4.72314 4.75992 4.78512 4.81509 4.88770 4.91077 5.02502 5.08585 5.14978 5.17582 5.24439 5.29085 5.39743 5.49771 5.67372 5.71207 5.90394 5.94138 6.08763 6.26189 6.53295 6.56990 6.72113 6.86826 7.45635 7.86356 8.96522 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.002196 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.624868 B =12746.469591 C =13090.853414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.464 5.464 4 C 0.264 3.736 5 C -0.193 4.193 6 C 0.070 3.930 7 N -0.293 5.293 8 N -0.360 5.360 9 C 0.134 3.866 10 C -0.027 4.027 11 C 0.242 3.758 12 N -0.490 5.490 13 C 0.129 3.871 14 N -0.328 5.328 15 N -0.344 5.344 16 C 0.353 3.647 17 N -0.464 5.464 18 C 0.050 3.950 19 C 0.238 3.762 20 H 0.000 1.000 21 C -0.155 4.155 22 C -0.514 4.514 23 H 0.071 0.929 24 C 0.013 3.987 25 N -0.921 5.921 26 Si 0.966 3.034 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.262 1.262 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.201 0.799 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.207 0.793 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.032 0.968 46 H 0.029 0.971 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 -9.658 -19.036 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.157 5.157 4 C -0.002 4.002 5 C -0.208 4.208 6 C -0.118 4.118 7 N -0.113 5.113 8 N -0.140 5.140 9 C 0.013 3.987 10 C -0.067 4.067 11 C -0.076 4.076 12 N -0.167 5.167 13 C -0.022 4.022 14 N -0.169 5.169 15 N -0.188 5.188 16 C -0.004 4.004 17 N -0.189 5.189 18 C -0.097 4.097 19 C 0.132 3.868 20 H 0.017 0.983 21 C -0.215 4.215 22 C -0.552 4.552 23 H 0.090 0.910 24 C -0.187 4.187 25 N -0.560 5.560 26 Si 0.792 3.208 27 H -0.203 1.203 28 H -0.214 1.214 29 H -0.186 1.186 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.217 0.783 36 H 0.125 0.875 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.224 0.776 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.628 -8.854 -21.785 24.721 hybrid contribution -0.781 0.105 2.406 2.532 sum 6.847 -8.748 -19.379 22.337 Atomic orbital electron populations 1.22158 0.93652 1.04736 1.01778 1.22195 0.95987 0.77423 1.06174 1.46589 1.49689 1.14579 1.04833 1.22099 1.01449 0.88150 0.88520 1.17395 1.13851 1.02859 0.86658 1.24319 0.98342 0.97281 0.91885 1.77223 1.14207 1.06702 1.13128 1.48559 1.38996 1.19600 1.06815 1.21920 1.02560 0.97981 0.76280 1.19547 1.04600 1.00095 0.82485 1.29141 0.91738 0.92086 0.94601 1.81384 1.11085 1.09938 1.14317 1.22816 0.97289 0.97659 0.84477 1.74134 1.21679 1.18130 1.03003 1.74506 1.22185 1.18222 1.03844 1.22700 1.00998 0.87116 0.89583 1.59239 1.07542 1.57177 0.94974 1.22231 0.88801 0.99510 0.99206 1.19010 0.85448 0.88823 0.93489 0.98258 1.22234 1.00400 1.00338 0.98484 1.21264 1.15541 1.21139 0.97296 0.91048 1.25743 0.95400 0.95078 1.02430 1.70060 1.19430 1.28236 1.38280 0.85428 0.76932 0.79111 0.79377 1.20291 1.21386 1.18618 0.94980 0.91778 0.87033 0.85601 0.88212 0.78261 0.87462 0.84620 0.84680 0.84961 0.77589 0.95491 0.89631 0.91141 0.92249 0.94926 0.95261 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 9.72 71.98 0.70 -3.11 16 2 C 0.10 2.39 6.12 86.38 0.53 2.91 16 3 N -0.46 -15.05 2.83 -516.52 -1.46 -16.51 16 4 C 0.26 8.24 7.91 136.30 1.08 9.32 16 5 C -0.19 -4.13 6.04 -20.39 -0.12 -4.25 16 6 C 0.07 1.19 10.66 85.55 0.91 2.10 16 7 N -0.29 -4.32 12.37 -56.37 -0.70 -5.02 16 8 N -0.36 -3.81 3.67 -347.05 -1.27 -5.08 16 9 C 0.13 0.36 6.45 86.38 0.56 0.92 16 10 C -0.03 -0.04 5.88 28.79 0.17 0.13 16 11 C 0.24 2.11 15.44 89.43 1.38 3.49 16 12 N -0.49 -8.41 18.54 20.02 0.37 -8.04 16 13 C 0.13 1.92 11.40 83.86 0.96 2.87 16 14 N -0.33 -12.67 12.21 -50.77 -0.62 -13.29 16 15 N -0.34 -15.13 9.71 -57.89 -0.56 -15.69 16 16 C 0.35 14.46 6.21 260.02 1.62 16.08 16 17 N -0.46 -19.93 4.77 -710.83 -3.39 -23.33 16 18 C 0.05 1.95 8.67 127.69 1.11 3.05 16 19 C 0.24 12.16 2.32 44.17 0.10 12.26 16 20 H 0.00 -0.03 8.11 -2.39 -0.02 -0.05 16 21 C -0.16 -8.14 8.20 71.98 0.59 -7.55 16 22 C -0.51 -27.00 7.82 25.60 0.20 -26.80 16 23 H 0.07 3.60 6.80 -2.91 -0.02 3.58 16 24 C 0.01 0.67 5.30 84.65 0.45 1.12 16 25 N -0.92 -52.58 11.32 21.45 0.24 -52.33 16 26 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 29 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 30 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.38 7.29 -2.38 -0.02 1.37 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.13 1.90 6.00 -2.38 -0.01 1.88 16 34 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.20 2.68 4.94 -2.91 -0.01 2.67 16 36 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.14 -0.24 8.07 -2.39 -0.02 -0.26 16 38 H 0.14 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.21 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.03 1.11 6.51 -2.38 -0.02 1.09 16 42 H 0.09 3.37 6.31 -2.39 -0.02 3.35 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 45 H 0.03 1.64 6.58 -2.38 -0.02 1.62 16 46 H 0.03 1.52 5.94 -2.39 -0.01 1.51 16 47 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -78.08 390.42 5.86 -72.22 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.01 Total: 10.41 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 10.22 Total: 12.54 kcal Atomic # 7 Polarization: -131.89 SS G_CDS: -7.40 Total: -139.29 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -78.08 5.86 -72.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650303132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.923 kcal (2) G-P(sol) polarization free energy of solvation -78.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds