Wall clock time and date at job start Wed Apr 1 2020 02:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47114 * 2 1 4 4 C 1.37469 * 127.18083 * 83.01406 * 3 2 1 5 5 C 1.47988 * 126.47037 * 359.95606 * 4 3 2 6 6 C 1.41014 * 126.25570 * 17.23895 * 5 4 3 7 7 N 1.30638 * 108.08557 * 179.97438 * 6 5 4 8 8 N 1.39997 * 108.58259 * 0.02562 * 7 6 5 9 9 C 1.46504 * 125.86872 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47150 * 304.98125 * 9 8 7 11 11 C 1.47206 * 109.47162 * 179.97438 * 10 9 8 12 12 N 9.62790 * 77.33483 * 70.82341 * 2 1 3 13 13 C 1.34824 * 108.26445 * 359.75220 * 8 7 6 14 14 N 1.31210 * 107.05452 * 179.97438 * 4 3 2 15 15 N 1.28512 * 109.96868 * 359.97438 * 14 4 3 16 16 C 1.31210 * 110.09543 * 359.74913 * 15 14 4 17 17 N 1.38579 * 126.38055 * 180.29120 * 16 15 14 18 18 C 1.46897 * 111.00160 * 243.28416 * 17 16 15 19 19 C 1.46899 * 110.99921 * 7.23628 * 17 16 15 20 20 H 1.09000 * 109.47439 * 300.00254 * 19 17 16 21 21 C 1.53008 * 109.47165 * 60.00099 * 19 17 16 22 22 C 1.50701 * 109.46919 * 179.97438 * 19 17 16 23 23 H 1.08000 * 120.00264 * 0.02562 * 22 19 17 24 24 C 1.37879 * 119.99518 * 180.02562 * 22 19 17 25 25 N 1.31511 * 120.00530 * 359.97438 * 24 22 19 26 26 Si 1.86803 * 119.99749 * 180.02562 * 24 22 19 27 27 H 1.48500 * 109.47173 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47225 * 119.99908 * 26 24 22 29 29 H 1.48501 * 109.47348 * 239.99895 * 26 24 22 30 30 H 1.08995 * 109.47438 * 51.26752 * 1 2 3 31 31 H 1.08998 * 109.47348 * 171.27763 * 1 2 3 32 32 H 1.09009 * 109.46656 * 291.27253 * 1 2 3 33 33 H 1.08998 * 109.47060 * 120.00005 * 2 1 3 34 34 H 1.09003 * 109.46766 * 239.99998 * 2 1 3 35 35 H 1.07994 * 125.95696 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.46657 * 64.97626 * 9 8 7 37 37 H 1.09000 * 109.47160 * 184.97214 * 9 8 7 38 38 H 1.09000 * 109.46933 * 299.99332 * 10 9 8 39 39 H 1.09000 * 109.47833 * 59.99501 * 10 9 8 40 40 H 1.07992 * 126.21149 * 180.23622 * 13 8 7 41 41 H 1.09000 * 109.47042 * 49.74097 * 18 17 16 42 42 H 1.08995 * 109.47427 * 169.74898 * 18 17 16 43 43 H 1.09001 * 109.46689 * 289.74589 * 18 17 16 44 44 H 1.09001 * 109.46933 * 179.97438 * 21 19 17 45 45 H 1.08995 * 109.46921 * 300.00121 * 21 19 17 46 46 H 1.09000 * 109.46816 * 59.99773 * 21 19 17 47 47 H 0.97003 * 120.00247 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1696 2.2089 1.0871 5 6 1.8671 1.8740 2.4965 6 6 1.6991 0.5789 3.0284 7 7 1.4450 0.6944 4.3046 8 7 1.4397 2.0542 4.6371 9 6 1.1938 2.6111 5.9697 10 6 -0.1452 2.0941 6.4994 11 6 -0.3920 2.6531 7.8386 12 7 -0.5810 3.0856 8.8724 13 6 1.7046 2.7631 3.5213 14 7 2.6326 3.3519 0.6391 15 7 2.7796 3.2962 -0.6364 16 6 2.4249 2.1133 -1.0798 17 7 2.4542 1.6869 -2.3981 18 6 1.1022 1.3765 -2.8812 19 6 3.1052 2.6832 -3.2592 20 1 2.5550 3.6228 -3.2080 21 6 4.5422 2.9072 -2.7840 22 6 3.1189 2.1854 -4.6816 23 1 2.6868 1.2252 -4.9219 24 6 3.6830 2.9559 -5.6761 25 7 4.2086 4.1254 -5.3837 26 14 3.6993 2.3392 -7.4394 27 1 3.0488 1.0059 -7.5035 28 1 2.9590 3.2928 -8.3042 29 1 5.1027 2.2291 -7.9123 30 1 -0.3634 0.6430 -0.8016 31 1 -0.3634 -1.0157 -0.1558 32 1 -0.3633 0.3729 0.9577 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.7684 -0.3470 2.4769 36 1 1.9936 2.3058 6.6443 37 1 1.1650 3.6991 5.9092 38 1 -0.9451 2.3994 5.8248 39 1 -0.1165 1.0061 6.5599 40 1 1.7734 3.8385 3.4500 41 1 0.4342 2.2061 -2.6495 42 1 1.1284 1.2214 -3.9597 43 1 0.7406 0.4717 -2.3927 44 1 5.0253 3.6461 -3.4233 45 1 4.5327 3.2669 -1.7551 46 1 5.0924 1.9676 -2.8352 47 1 4.6052 4.6676 -6.0835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650303134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:06 Heat of formation + Delta-G solvation = 211.803428 kcal Electronic energy + Delta-G solvation = -29576.029014 eV Core-core repulsion = 25605.575179 eV Total energy + Delta-G solvation = -3970.453835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.43491 -41.39618 -37.52908 -37.10385 -35.62726 -34.78968 -32.87516 -31.36852 -30.97238 -30.41073 -29.22657 -28.31771 -25.63016 -25.20456 -24.39022 -23.97442 -22.50495 -21.68869 -20.93613 -20.09588 -19.25998 -18.38299 -17.35759 -16.81196 -16.30868 -15.90548 -15.82038 -15.43850 -15.29998 -15.03125 -14.51479 -14.44864 -14.16690 -13.92153 -13.61078 -13.38813 -13.26609 -13.15466 -13.04125 -12.86387 -12.49529 -12.46547 -12.28791 -11.90104 -11.79762 -11.37961 -11.22255 -11.07749 -10.99178 -10.87920 -10.55283 -10.37727 -10.17630 -10.07017 -9.87828 -9.83931 -9.79799 -9.57869 -8.94542 -8.52372 -8.26159 -7.23034 -6.04477 -4.12187 1.35243 1.79878 1.90831 2.20568 2.24736 2.63315 2.85606 3.27330 3.35332 3.36082 3.37788 3.59361 3.92413 4.16847 4.31761 4.36373 4.50887 4.56382 4.58629 4.63870 4.77531 4.90480 4.92962 5.07026 5.18682 5.23197 5.27329 5.34450 5.50397 5.56182 5.67553 5.89095 5.97817 6.01502 6.16811 6.23609 6.38451 6.52373 6.54898 6.91929 6.95085 7.02338 7.21278 7.27601 7.33989 7.47101 7.72917 7.74155 7.99135 8.28550 8.45944 8.89718 9.37996 9.52422 11.01633 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.028077 B = 0.002160 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.003222 B =12957.219268 C =13521.564681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.483 5.483 4 C 0.226 3.774 5 C -0.147 4.147 6 C 0.065 3.935 7 N -0.290 5.290 8 N -0.375 5.375 9 C 0.143 3.857 10 C -0.037 4.037 11 C 0.207 3.793 12 N -0.424 5.424 13 C 0.105 3.895 14 N -0.283 5.283 15 N -0.313 5.313 16 C 0.389 3.611 17 N -0.456 5.456 18 C 0.030 3.970 19 C 0.230 3.770 20 H 0.023 0.977 21 C -0.139 4.139 22 C -0.517 4.517 23 H 0.066 0.934 24 C 0.064 3.936 25 N -0.882 5.882 26 Si 0.899 3.101 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.283 1.283 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.187 0.813 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.189 0.811 41 H 0.025 0.975 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.023 0.977 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.322 -8.441 18.755 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.180 5.180 4 C -0.040 4.040 5 C -0.161 4.161 6 C -0.123 4.123 7 N -0.109 5.109 8 N -0.156 5.156 9 C 0.020 3.980 10 C -0.078 4.078 11 C -0.112 4.112 12 N -0.100 5.100 13 C -0.044 4.044 14 N -0.123 5.123 15 N -0.157 5.157 16 C 0.034 3.966 17 N -0.180 5.180 18 C -0.117 4.117 19 C 0.126 3.874 20 H 0.041 0.959 21 C -0.197 4.197 22 C -0.556 4.556 23 H 0.084 0.916 24 C -0.139 4.139 25 N -0.520 5.520 26 Si 0.727 3.273 27 H -0.197 1.197 28 H -0.211 1.211 29 H -0.210 1.210 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.203 0.797 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.206 0.794 41 H 0.044 0.956 42 H 0.120 0.880 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.055 0.945 46 H 0.042 0.958 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.009 -7.200 21.329 24.247 hybrid contribution -0.432 -0.849 -2.232 2.426 sum -9.440 -8.049 19.097 22.773 Atomic orbital electron populations 1.22253 0.94248 1.03214 1.03314 1.21906 0.95424 0.79853 1.04661 1.46221 1.52120 1.13345 1.06335 1.21346 1.06210 0.89166 0.87252 1.17300 1.16871 0.92691 0.89234 1.24111 0.98809 0.97904 0.91510 1.77201 1.24460 0.94210 1.15051 1.48271 1.55275 1.04485 1.07612 1.21539 0.96834 0.99243 0.80372 1.19482 0.99050 1.03229 0.86052 1.28792 0.94036 0.93763 0.94603 1.81322 1.07769 1.08878 1.12039 1.22542 0.98021 0.98986 0.84856 1.74245 1.16002 1.17863 1.04199 1.74772 1.24299 1.14332 1.02342 1.23136 0.97490 0.86857 0.89078 1.59072 1.18443 1.45050 0.95475 1.22531 0.86734 0.98732 1.03683 1.19352 0.91767 0.87369 0.88938 0.95949 1.21902 0.97683 1.00564 0.99600 1.21099 1.39241 1.04515 0.90729 0.91643 1.24901 0.95063 0.94841 0.99086 1.69935 1.38208 1.10905 1.32921 0.86434 0.77788 0.78739 0.84361 1.19745 1.21051 1.20958 0.91388 0.90482 0.91883 0.89427 0.87934 0.79670 0.88462 0.87219 0.86509 0.85750 0.79449 0.95605 0.88050 0.92806 0.89435 0.94494 0.95752 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.73 37.16 0.36 -1.17 16 2 C 0.10 1.13 5.50 -4.04 -0.02 1.11 16 3 N -0.48 -7.58 2.83 -114.61 -0.32 -7.90 16 4 C 0.23 3.57 7.91 -153.84 -1.22 2.35 16 5 C -0.15 -1.70 6.05 -105.42 -0.64 -2.33 16 6 C 0.07 0.61 11.17 -17.01 -0.19 0.42 16 7 N -0.29 -2.54 12.37 30.83 0.38 -2.16 16 8 N -0.37 -2.65 3.67 -61.05 -0.22 -2.87 16 9 C 0.14 0.48 6.45 -4.04 -0.03 0.45 16 10 C -0.04 -0.10 5.88 -29.52 -0.17 -0.27 16 11 C 0.21 1.15 15.44 -20.74 -0.32 0.83 16 12 N -0.42 -3.88 18.54 42.17 0.78 -3.09 16 13 C 0.10 0.94 11.41 -16.81 -0.19 0.75 16 14 N -0.28 -5.54 12.22 32.60 0.40 -5.14 16 15 N -0.31 -7.02 9.27 30.35 0.28 -6.74 16 16 C 0.39 7.86 6.46 -318.61 -2.06 5.81 16 17 N -0.46 -9.64 4.61 -176.02 -0.81 -10.45 16 18 C 0.03 0.54 8.81 60.06 0.53 1.07 16 19 C 0.23 5.82 1.71 -68.86 -0.12 5.70 16 20 H 0.02 0.65 8.03 -51.93 -0.42 0.23 16 21 C -0.14 -3.60 8.77 37.16 0.33 -3.28 16 22 C -0.52 -13.58 7.74 -34.44 -0.27 -13.84 16 23 H 0.07 1.66 6.50 -52.49 -0.34 1.32 16 24 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 25 N -0.88 -24.90 11.32 55.43 0.63 -24.27 16 26 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.07 0.73 6.55 -51.93 -0.34 0.39 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.09 0.72 5.13 -51.93 -0.27 0.45 16 34 H 0.10 1.16 7.46 -51.93 -0.39 0.77 16 35 H 0.19 1.36 5.47 -52.49 -0.29 1.08 16 36 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.11 0.16 8.07 -51.93 -0.42 -0.26 16 38 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 42 H 0.10 1.90 5.85 -51.93 -0.30 1.60 16 43 H 0.05 0.76 4.94 -51.93 -0.26 0.50 16 44 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 45 H 0.04 0.94 5.70 -51.93 -0.30 0.64 16 46 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 387.05 15.07 5.83 5.83 Total: -1.00 -35.17 387.05 -8.32 -43.49 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -6.14 Total: -1.45 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -4.10 Total: -0.79 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: 1.11 Total: -62.63 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.17 -8.32 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650303134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.291 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 220.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 211.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds