Wall clock time and date at job start Wed Apr 1 2020 02:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47114 * 2 1 4 4 C 1.37469 * 127.18083 * 83.01406 * 3 2 1 5 5 C 1.47988 * 126.47037 * 359.95606 * 4 3 2 6 6 C 1.41014 * 126.25570 * 17.23895 * 5 4 3 7 7 N 1.30638 * 108.08557 * 179.97438 * 6 5 4 8 8 N 1.39997 * 108.58259 * 0.02562 * 7 6 5 9 9 C 1.46504 * 125.86872 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47150 * 304.98125 * 9 8 7 11 11 C 1.47206 * 109.47162 * 179.97438 * 10 9 8 12 12 N 9.62790 * 77.33483 * 70.82341 * 2 1 3 13 13 C 1.34824 * 108.26445 * 359.75220 * 8 7 6 14 14 N 1.31210 * 107.05452 * 179.97438 * 4 3 2 15 15 N 1.28512 * 109.96868 * 359.97438 * 14 4 3 16 16 C 1.31210 * 110.09543 * 359.74913 * 15 14 4 17 17 N 1.38579 * 126.38055 * 180.29120 * 16 15 14 18 18 C 1.46897 * 111.00160 * 243.28416 * 17 16 15 19 19 C 1.46899 * 110.99921 * 7.23628 * 17 16 15 20 20 H 1.09000 * 109.47439 * 300.00254 * 19 17 16 21 21 C 1.53008 * 109.47165 * 60.00099 * 19 17 16 22 22 C 1.50701 * 109.46919 * 179.97438 * 19 17 16 23 23 H 1.08000 * 120.00264 * 0.02562 * 22 19 17 24 24 C 1.37879 * 119.99518 * 180.02562 * 22 19 17 25 25 N 1.31511 * 120.00530 * 359.97438 * 24 22 19 26 26 Si 1.86803 * 119.99749 * 180.02562 * 24 22 19 27 27 H 1.48500 * 109.47173 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47225 * 119.99908 * 26 24 22 29 29 H 1.48501 * 109.47348 * 239.99895 * 26 24 22 30 30 H 1.08995 * 109.47438 * 51.26752 * 1 2 3 31 31 H 1.08998 * 109.47348 * 171.27763 * 1 2 3 32 32 H 1.09009 * 109.46656 * 291.27253 * 1 2 3 33 33 H 1.08998 * 109.47060 * 120.00005 * 2 1 3 34 34 H 1.09003 * 109.46766 * 239.99998 * 2 1 3 35 35 H 1.07994 * 125.95696 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.46657 * 64.97626 * 9 8 7 37 37 H 1.09000 * 109.47160 * 184.97214 * 9 8 7 38 38 H 1.09000 * 109.46933 * 299.99332 * 10 9 8 39 39 H 1.09000 * 109.47833 * 59.99501 * 10 9 8 40 40 H 1.07992 * 126.21149 * 180.23622 * 13 8 7 41 41 H 1.09000 * 109.47042 * 49.74097 * 18 17 16 42 42 H 1.08995 * 109.47427 * 169.74898 * 18 17 16 43 43 H 1.09001 * 109.46689 * 289.74589 * 18 17 16 44 44 H 1.09001 * 109.46933 * 179.97438 * 21 19 17 45 45 H 1.08995 * 109.46921 * 300.00121 * 21 19 17 46 46 H 1.09000 * 109.46816 * 59.99773 * 21 19 17 47 47 H 0.97003 * 120.00247 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1696 2.2089 1.0871 5 6 1.8671 1.8740 2.4965 6 6 1.6991 0.5789 3.0284 7 7 1.4450 0.6944 4.3046 8 7 1.4397 2.0542 4.6371 9 6 1.1938 2.6111 5.9697 10 6 -0.1452 2.0941 6.4994 11 6 -0.3920 2.6531 7.8386 12 7 -0.5810 3.0856 8.8724 13 6 1.7046 2.7631 3.5213 14 7 2.6326 3.3519 0.6391 15 7 2.7796 3.2962 -0.6364 16 6 2.4249 2.1133 -1.0798 17 7 2.4542 1.6869 -2.3981 18 6 1.1022 1.3765 -2.8812 19 6 3.1052 2.6832 -3.2592 20 1 2.5550 3.6228 -3.2080 21 6 4.5422 2.9072 -2.7840 22 6 3.1189 2.1854 -4.6816 23 1 2.6868 1.2252 -4.9219 24 6 3.6830 2.9559 -5.6761 25 7 4.2086 4.1254 -5.3837 26 14 3.6993 2.3392 -7.4394 27 1 3.0488 1.0059 -7.5035 28 1 2.9590 3.2928 -8.3042 29 1 5.1027 2.2291 -7.9123 30 1 -0.3634 0.6430 -0.8016 31 1 -0.3634 -1.0157 -0.1558 32 1 -0.3633 0.3729 0.9577 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.7684 -0.3470 2.4769 36 1 1.9936 2.3058 6.6443 37 1 1.1650 3.6991 5.9092 38 1 -0.9451 2.3994 5.8248 39 1 -0.1165 1.0061 6.5599 40 1 1.7734 3.8385 3.4500 41 1 0.4342 2.2061 -2.6495 42 1 1.1284 1.2214 -3.9597 43 1 0.7406 0.4717 -2.3927 44 1 5.0253 3.6461 -3.4233 45 1 4.5327 3.2669 -1.7551 46 1 5.0924 1.9676 -2.8352 47 1 4.6052 4.6676 -6.0835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650303134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:05 Heat of formation + Delta-G solvation = 190.734661 kcal Electronic energy + Delta-G solvation = -29576.942624 eV Core-core repulsion = 25605.575179 eV Total energy + Delta-G solvation = -3971.367445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.75128 -42.13217 -38.79478 -38.01954 -36.71411 -35.38351 -34.76311 -32.36681 -31.60898 -31.47425 -31.07668 -29.51308 -27.33032 -26.11239 -25.78384 -25.00522 -23.69082 -22.99859 -21.78820 -21.12336 -20.70749 -18.79665 -18.52554 -18.15486 -17.42846 -17.25123 -16.88520 -16.63500 -16.28134 -16.04551 -15.68251 -15.47035 -15.24379 -14.91187 -14.81796 -14.44260 -14.18332 -14.03920 -13.81585 -13.78101 -13.65370 -13.57356 -13.09646 -12.95055 -12.87207 -12.74271 -12.67529 -12.35275 -12.20440 -12.17488 -12.06779 -12.01440 -11.92197 -11.78902 -11.37318 -11.14265 -10.89999 -10.69992 -10.52476 -10.46448 -9.64670 -8.67284 -8.09197 -6.24279 0.48761 1.00053 1.22118 1.44812 1.47432 1.49676 1.60527 1.66488 1.77425 1.79405 2.35477 2.44756 2.97419 3.06301 3.22487 3.38202 3.63199 3.73773 3.87127 3.95672 3.99692 4.12635 4.17135 4.33229 4.34988 4.44054 4.46466 4.53011 4.59636 4.77960 4.81385 4.87238 4.90130 4.91072 4.95883 5.05535 5.16007 5.22211 5.30373 5.31909 5.42800 5.49209 5.65497 5.69772 5.91480 6.01165 6.10335 6.21820 6.53420 6.58802 6.67100 6.86265 7.44290 7.97793 8.97699 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.028077 B = 0.002160 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.003222 B =12957.219268 C =13521.564681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 N -0.475 5.475 4 C 0.259 3.741 5 C -0.187 4.187 6 C 0.073 3.927 7 N -0.292 5.292 8 N -0.361 5.361 9 C 0.134 3.866 10 C -0.026 4.026 11 C 0.242 3.758 12 N -0.490 5.490 13 C 0.123 3.877 14 N -0.329 5.329 15 N -0.363 5.363 16 C 0.367 3.633 17 N -0.456 5.456 18 C 0.035 3.965 19 C 0.242 3.758 20 H -0.024 1.024 21 C -0.123 4.123 22 C -0.525 4.525 23 H 0.076 0.924 24 C 0.011 3.989 25 N -0.919 5.919 26 Si 0.970 3.030 27 H -0.258 1.258 28 H -0.283 1.283 29 H -0.284 1.284 30 H 0.046 0.954 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.204 0.796 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.202 0.798 41 H 0.014 0.986 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.034 0.966 46 H 0.022 0.978 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.712 -11.221 20.077 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.171 5.171 4 C -0.008 4.008 5 C -0.201 4.201 6 C -0.115 4.115 7 N -0.112 5.112 8 N -0.141 5.141 9 C 0.013 3.987 10 C -0.067 4.067 11 C -0.076 4.076 12 N -0.167 5.167 13 C -0.028 4.028 14 N -0.168 5.168 15 N -0.207 5.207 16 C 0.009 3.991 17 N -0.180 5.180 18 C -0.112 4.112 19 C 0.136 3.864 20 H -0.006 1.006 21 C -0.181 4.181 22 C -0.563 4.563 23 H 0.094 0.906 24 C -0.189 4.189 25 N -0.558 5.558 26 Si 0.795 3.205 27 H -0.181 1.181 28 H -0.209 1.209 29 H -0.210 1.210 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.221 0.779 36 H 0.126 0.874 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.219 0.781 41 H 0.033 0.967 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.041 0.959 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.429 -10.022 22.707 26.922 hybrid contribution -0.066 -0.003 -2.381 2.382 sum -10.496 -10.026 20.326 24.976 Atomic orbital electron populations 1.22221 0.92365 1.04787 1.02848 1.22377 0.96937 0.77329 1.06161 1.46419 1.51170 1.14706 1.04772 1.22026 1.02297 0.87758 0.88751 1.17357 1.20643 0.94614 0.87531 1.24306 0.98007 0.97632 0.91585 1.77212 1.24417 0.94983 1.14587 1.48522 1.53459 1.03865 1.08225 1.21897 0.97493 1.00638 0.78678 1.19546 0.99144 1.03481 0.84513 1.29140 0.92062 0.91994 0.94401 1.81369 1.10027 1.11152 1.14176 1.22775 0.95762 0.99524 0.84779 1.74130 1.19212 1.20253 1.03228 1.74597 1.25709 1.16366 1.04069 1.22937 0.99285 0.87473 0.89379 1.58989 1.19929 1.43379 0.95718 1.22587 0.85233 1.00049 1.03344 1.18923 0.90947 0.86617 0.89867 1.00598 1.21687 0.98191 0.99414 0.98833 1.21406 1.38874 1.04785 0.91250 0.90630 1.25808 0.94659 0.94903 1.03492 1.70095 1.39173 1.12271 1.34216 0.85332 0.77635 0.78723 0.78857 1.18119 1.20887 1.20994 0.93501 0.87184 0.91290 0.86250 0.88201 0.77921 0.87412 0.84915 0.84810 0.84834 0.78131 0.96709 0.89128 0.88671 0.92058 0.94715 0.95933 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.73 71.98 0.70 -1.69 16 2 C 0.09 1.76 5.50 86.38 0.48 2.24 16 3 N -0.47 -14.52 2.83 -516.52 -1.46 -15.98 16 4 C 0.26 8.00 7.91 136.30 1.08 9.08 16 5 C -0.19 -3.88 6.05 -20.38 -0.12 -4.00 16 6 C 0.07 1.12 11.17 85.55 0.96 2.07 16 7 N -0.29 -3.99 12.37 -56.37 -0.70 -4.69 16 8 N -0.36 -3.74 3.67 -347.05 -1.27 -5.02 16 9 C 0.13 0.38 6.45 86.38 0.56 0.93 16 10 C -0.03 -0.04 5.88 28.79 0.17 0.13 16 11 C 0.24 2.12 15.44 89.44 1.38 3.50 16 12 N -0.49 -8.45 18.54 20.01 0.37 -8.08 16 13 C 0.12 1.86 11.41 83.86 0.96 2.82 16 14 N -0.33 -13.26 12.22 -50.78 -0.62 -13.88 16 15 N -0.36 -17.11 9.27 -57.89 -0.54 -17.65 16 16 C 0.37 15.18 6.46 260.02 1.68 16.86 16 17 N -0.46 -19.74 4.61 -710.82 -3.28 -23.02 16 18 C 0.03 1.23 8.81 127.69 1.12 2.36 16 19 C 0.24 12.85 1.71 44.17 0.08 12.93 16 20 H -0.02 -1.45 8.03 -2.39 -0.02 -1.47 16 21 C -0.12 -6.70 8.77 71.98 0.63 -6.07 16 22 C -0.52 -28.15 7.74 25.60 0.20 -27.95 16 23 H 0.08 3.82 6.50 -2.91 -0.02 3.80 16 24 C 0.01 0.59 5.30 84.66 0.45 1.03 16 25 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 26 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 27 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 29 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 30 H 0.05 0.90 6.55 -2.39 -0.02 0.89 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.12 1.50 5.13 -2.39 -0.01 1.49 16 34 H 0.10 2.01 7.46 -2.39 -0.02 1.99 16 35 H 0.20 2.12 5.47 -2.91 -0.02 2.11 16 36 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.13 -0.15 8.07 -2.39 -0.02 -0.17 16 38 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.01 0.54 8.05 -2.39 -0.02 0.52 16 42 H 0.09 3.41 5.85 -2.39 -0.01 3.39 16 43 H 0.09 2.54 4.94 -2.39 -0.01 2.53 16 44 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 45 H 0.03 1.87 5.70 -2.39 -0.01 1.86 16 46 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -82.50 387.05 6.10 -76.40 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.02 Total: 6.75 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 10.31 Total: 14.23 kcal Atomic # 7 Polarization: -134.72 SS G_CDS: -7.25 Total: -141.97 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -82.50 6.10 -76.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650303134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 267.139 kcal (2) G-P(sol) polarization free energy of solvation -82.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds