Wall clock time and date at job start Wed Apr 1 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00065 * 2 1 4 4 C 1.52999 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.46547 * 304.99285 * 4 3 2 6 6 O 1.42894 * 109.47258 * 64.99332 * 4 3 2 7 7 C 1.42901 * 114.00272 * 270.00017 * 6 4 3 8 8 C 1.50695 * 109.47222 * 184.99805 * 4 3 2 9 9 O 1.21276 * 120.00049 * 244.99720 * 8 4 3 10 10 N 1.34783 * 120.00294 * 64.99453 * 8 4 3 11 11 C 1.46499 * 119.99661 * 0.02562 * 10 8 4 12 12 C 1.46494 * 120.00160 * 180.02562 * 10 8 4 13 13 C 1.53002 * 109.47135 * 270.00041 * 12 10 8 14 14 H 1.08995 * 112.78827 * 75.81109 * 13 12 10 15 15 C 1.53516 * 113.47443 * 206.62105 * 13 12 10 16 16 C 1.53518 * 83.57491 * 140.79127 * 15 13 12 17 17 N 1.47473 * 113.47678 * 304.99913 * 13 12 10 18 18 C 1.46903 * 111.00047 * 106.52876 * 17 13 12 19 19 C 1.50699 * 109.46994 * 170.00157 * 18 17 13 20 20 O 1.21293 * 120.00471 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99768 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99958 * 179.97438 * 21 19 18 23 23 H 1.07992 * 120.00328 * 0.02562 * 22 21 19 24 24 C 1.38947 * 119.99689 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00367 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99822 * 180.27886 * 24 22 21 27 27 H 1.48497 * 109.47322 * 179.73003 * 26 24 22 28 28 H 1.48506 * 109.47056 * 299.72747 * 26 24 22 29 29 H 1.48501 * 109.47099 * 59.72776 * 26 24 22 30 30 H 1.09009 * 109.47325 * 300.00323 * 1 2 3 31 31 H 1.08995 * 109.47123 * 60.00087 * 1 2 3 32 32 H 1.08994 * 109.47350 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47393 * 59.99249 * 3 2 1 34 34 H 1.09004 * 109.46895 * 299.99742 * 3 2 1 35 35 H 1.09006 * 109.47095 * 300.00649 * 7 6 4 36 36 H 1.08996 * 109.46874 * 59.99978 * 7 6 4 37 37 H 1.08992 * 109.47395 * 180.02562 * 7 6 4 38 38 H 1.09001 * 109.47231 * 269.99741 * 11 10 8 39 39 H 1.09001 * 109.47281 * 29.99770 * 11 10 8 40 40 H 1.09003 * 109.46865 * 149.99881 * 11 10 8 41 41 H 1.09003 * 109.47195 * 150.00238 * 12 10 8 42 42 H 1.09005 * 109.47128 * 30.00039 * 12 10 8 43 43 H 1.09004 * 114.16574 * 254.43618 * 15 13 12 44 44 H 1.08992 * 114.17405 * 26.95420 * 15 13 12 45 45 H 1.08993 * 113.47199 * 219.21115 * 16 15 13 46 46 H 1.09000 * 113.47645 * 88.73812 * 16 15 13 47 47 H 1.08998 * 109.47190 * 50.00085 * 18 17 13 48 48 H 1.08997 * 109.47280 * 290.00075 * 18 17 13 49 49 H 0.97000 * 120.00327 * 0.02562 * 21 19 18 50 50 H 0.97005 * 120.00032 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8513 0.5683 0.8411 6 8 3.9648 0.5796 -1.2218 7 6 4.0463 -0.8461 -1.1670 8 6 4.1480 2.5559 0.1231 9 8 4.8062 3.0106 -0.7884 10 7 3.9643 3.2772 1.2468 11 6 3.1696 2.7278 2.3481 12 6 4.5594 4.6105 1.3669 13 6 5.9573 4.4919 1.9773 14 1 6.6983 4.1247 1.2673 15 6 6.4045 5.7526 2.7307 16 6 6.9980 4.7409 3.7212 17 7 5.9763 3.7787 3.2680 18 6 6.5490 2.4342 3.1181 19 6 6.7794 1.8317 4.4801 20 8 6.4950 2.4606 5.4775 21 7 7.3014 0.5941 4.5898 22 6 7.5116 0.0461 5.8289 23 1 7.2584 0.6060 6.7170 24 6 8.0493 -1.2301 5.9420 25 7 8.3570 -1.9117 4.8614 26 14 8.3283 -1.9798 7.6301 27 1 8.9011 -3.3415 7.4785 28 1 9.2713 -1.1291 8.3998 29 1 7.0345 -2.0648 8.3540 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8464 -0.8901 35 1 4.7575 -1.1399 -0.3949 36 1 3.0646 -1.2573 -0.9321 37 1 4.3794 -1.2284 -2.1318 38 1 2.1242 3.0067 2.2162 39 1 3.2580 1.6414 2.3532 40 1 3.5354 3.1266 3.2943 41 1 3.9340 5.2310 2.0088 42 1 4.6315 5.0664 0.3794 43 1 7.1484 6.3483 2.2017 44 1 5.5841 6.3468 3.1329 45 1 6.8840 5.0363 4.7641 46 1 8.0167 4.4400 3.4765 47 1 7.4974 2.5006 2.5850 48 1 5.8589 1.8060 2.5550 49 1 7.5293 0.0912 3.7922 50 1 8.7327 -2.8025 4.9404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656092146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:35 Heat of formation + Delta-G solvation = -102.795837 kcal Electronic energy + Delta-G solvation = -32166.619588 eV Core-core repulsion = 27810.629283 eV Total energy + Delta-G solvation = -4355.990305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75178 -39.80005 -38.25766 -37.70935 -37.05424 -35.46754 -33.93014 -31.64733 -31.30108 -30.50697 -28.64632 -27.29151 -26.55266 -26.01429 -25.78913 -24.06114 -23.71737 -22.59885 -19.88164 -19.31240 -19.25605 -17.91671 -17.64369 -17.10967 -16.77512 -16.16401 -16.04235 -15.90557 -15.64283 -15.59083 -15.29546 -14.56491 -14.42968 -14.36249 -14.13594 -13.84074 -13.79242 -13.40643 -13.31270 -13.03115 -12.76797 -12.58229 -12.28090 -12.13169 -12.03866 -11.71065 -11.67752 -11.58644 -11.47914 -11.34325 -11.26984 -11.06108 -10.80444 -10.48878 -10.45320 -10.22790 -10.05529 -9.90314 -9.54135 -9.50990 -8.97265 -8.47615 -8.25531 -7.98353 -6.43139 -3.84411 2.41223 2.62506 3.18106 3.24273 3.28227 3.45991 3.77045 3.87577 4.04416 4.24543 4.47405 4.55676 4.61882 4.74791 4.87423 4.96345 5.00880 5.05759 5.10064 5.15005 5.18972 5.21932 5.30133 5.32489 5.38983 5.42532 5.48012 5.50675 5.54736 5.55590 5.73329 5.75470 5.78734 5.79587 5.85094 5.93963 6.09683 6.24757 6.29986 6.37730 6.61232 6.76945 6.93175 7.21214 7.30782 7.52948 8.03375 8.07004 8.59172 9.15871 9.52002 10.03583 10.74396 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008540 B = 0.003702 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.068766 B = 7562.379527 C = 9644.596954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.039 3.961 4 C 0.076 3.924 5 H 0.097 0.903 6 O -0.357 6.357 7 C 0.027 3.973 8 C 0.518 3.482 9 O -0.517 6.517 10 N -0.602 5.602 11 C 0.069 3.931 12 C 0.138 3.862 13 C 0.003 3.997 14 H 0.079 0.921 15 C -0.139 4.139 16 C 0.013 3.987 17 N -0.434 5.434 18 C 0.014 3.986 19 C 0.444 3.556 20 O -0.579 6.579 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.024 3.976 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.284 1.284 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.082 0.918 49 H 0.391 0.609 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.888 7.926 -10.896 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.038 4.038 4 C 0.014 3.986 5 H 0.115 0.885 6 O -0.274 6.274 7 C -0.069 4.069 8 C 0.304 3.696 9 O -0.391 6.391 10 N -0.336 5.336 11 C -0.074 4.074 12 C 0.016 3.984 13 C -0.108 4.108 14 H 0.097 0.903 15 C -0.177 4.177 16 C -0.115 4.115 17 N -0.157 5.157 18 C -0.118 4.118 19 C 0.230 3.770 20 O -0.462 6.462 21 N -0.201 5.201 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.210 1.210 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.224 0.776 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.109 8.167 -10.517 18.686 hybrid contribution 0.862 -1.048 0.138 1.364 sum -12.247 7.119 -10.379 17.561 Atomic orbital electron populations 1.22768 0.80659 1.02969 1.00090 1.87874 1.20056 1.26990 1.95463 1.23189 0.92613 0.85952 1.02048 1.21892 0.92515 0.93743 0.90463 0.88548 1.87972 1.87833 1.20427 1.31213 1.22974 1.01377 0.80013 1.02541 1.20098 0.81164 0.86070 0.82296 1.90709 1.39227 1.70307 1.38879 1.47687 1.52271 1.17765 1.15892 1.22119 0.94291 0.99670 0.91300 1.21478 0.92612 0.82921 1.01424 1.23928 0.97671 0.95736 0.93491 0.90291 1.23210 1.01170 0.95626 0.97701 1.23562 0.94631 0.92235 1.01121 1.68723 1.35322 0.99595 1.12025 1.22429 0.98819 0.93108 0.97473 1.19655 0.84306 0.83361 0.89718 1.90517 1.55812 1.61799 1.38119 1.41878 1.55289 1.13670 1.09237 1.19633 1.39097 0.98654 0.85572 0.88005 1.25254 0.97094 0.96432 0.99044 1.69607 1.43449 1.12922 1.28247 0.85933 0.78828 0.77878 0.81662 1.20957 1.19932 1.19884 0.93840 0.94017 0.89399 0.91060 0.92001 0.93697 0.92258 0.89554 0.92742 0.91228 0.88238 0.89634 0.89613 0.90806 0.88876 0.89057 0.91851 0.93039 0.90026 0.77589 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.17 8.83 -40.09 -0.35 -4.53 16 3 C 0.04 0.42 5.34 37.16 0.20 0.61 16 4 C 0.08 0.99 2.10 -27.89 -0.06 0.93 16 5 H 0.10 1.23 6.77 -51.92 -0.35 0.88 16 6 O -0.36 -5.28 9.88 -59.70 -0.59 -5.87 16 7 C 0.03 0.32 10.71 101.05 1.08 1.41 16 8 C 0.52 7.40 7.10 -10.99 -0.08 7.32 16 9 O -0.52 -9.15 16.09 -14.30 -0.23 -9.38 16 10 N -0.60 -7.28 2.70 -181.57 -0.49 -7.77 16 11 C 0.07 0.74 8.43 59.85 0.50 1.24 16 12 C 0.14 1.57 5.56 -4.04 -0.02 1.55 16 13 C 0.00 0.03 3.37 -71.43 -0.24 -0.21 16 14 H 0.08 1.12 7.77 -51.93 -0.40 0.72 16 15 C -0.14 -1.54 8.00 -26.20 -0.21 -1.74 16 16 C 0.01 0.20 6.71 -7.53 -0.05 0.15 16 17 N -0.43 -6.83 4.60 -237.93 -1.09 -7.92 16 18 C 0.01 0.25 5.31 -4.97 -0.03 0.23 16 19 C 0.44 10.37 7.62 -10.99 -0.08 10.28 16 20 O -0.58 -15.27 15.34 5.55 0.09 -15.18 16 21 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 22 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 25 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 26 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.63 5.07 -51.93 -0.26 0.37 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.06 0.67 6.40 -51.93 -0.33 0.34 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.44 6.95 -51.93 -0.36 0.08 16 39 H 0.07 0.76 6.11 -51.93 -0.32 0.44 16 40 H 0.10 1.24 7.21 -51.93 -0.37 0.87 16 41 H 0.09 0.82 7.80 -51.93 -0.41 0.41 16 42 H 0.09 0.98 7.42 -51.93 -0.39 0.60 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.92 7.93 -51.93 -0.41 0.51 16 45 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 46 H 0.06 0.97 7.70 -51.93 -0.40 0.57 16 47 H 0.05 0.91 7.56 -51.93 -0.39 0.51 16 48 H 0.08 1.42 7.85 -51.93 -0.41 1.01 16 49 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 404.07 15.07 6.09 6.09 Total: -1.00 -33.84 404.07 -7.07 -40.91 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -8.02 Total: 10.59 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 1.89 Total: 15.20 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.92 Total: -53.74 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.09 Total: -34.95 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.84 -7.07 -40.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656092146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.888 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds