Wall clock time and date at job start Wed Apr 1 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00065 * 2 1 4 4 C 1.52999 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.46547 * 304.99285 * 4 3 2 6 6 O 1.42894 * 109.47258 * 64.99332 * 4 3 2 7 7 C 1.42901 * 114.00272 * 270.00017 * 6 4 3 8 8 C 1.50695 * 109.47222 * 184.99805 * 4 3 2 9 9 O 1.21276 * 120.00049 * 244.99720 * 8 4 3 10 10 N 1.34783 * 120.00294 * 64.99453 * 8 4 3 11 11 C 1.46499 * 119.99661 * 0.02562 * 10 8 4 12 12 C 1.46494 * 120.00160 * 180.02562 * 10 8 4 13 13 C 1.53002 * 109.47135 * 270.00041 * 12 10 8 14 14 H 1.08995 * 112.78827 * 75.81109 * 13 12 10 15 15 C 1.53516 * 113.47443 * 206.62105 * 13 12 10 16 16 C 1.53518 * 83.57491 * 140.79127 * 15 13 12 17 17 N 1.47473 * 113.47678 * 304.99913 * 13 12 10 18 18 C 1.46903 * 111.00047 * 106.52876 * 17 13 12 19 19 C 1.50699 * 109.46994 * 170.00157 * 18 17 13 20 20 O 1.21293 * 120.00471 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99768 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99958 * 179.97438 * 21 19 18 23 23 H 1.07992 * 120.00328 * 0.02562 * 22 21 19 24 24 C 1.38947 * 119.99689 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00367 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99822 * 180.27886 * 24 22 21 27 27 H 1.48497 * 109.47322 * 179.73003 * 26 24 22 28 28 H 1.48506 * 109.47056 * 299.72747 * 26 24 22 29 29 H 1.48501 * 109.47099 * 59.72776 * 26 24 22 30 30 H 1.09009 * 109.47325 * 300.00323 * 1 2 3 31 31 H 1.08995 * 109.47123 * 60.00087 * 1 2 3 32 32 H 1.08994 * 109.47350 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47393 * 59.99249 * 3 2 1 34 34 H 1.09004 * 109.46895 * 299.99742 * 3 2 1 35 35 H 1.09006 * 109.47095 * 300.00649 * 7 6 4 36 36 H 1.08996 * 109.46874 * 59.99978 * 7 6 4 37 37 H 1.08992 * 109.47395 * 180.02562 * 7 6 4 38 38 H 1.09001 * 109.47231 * 269.99741 * 11 10 8 39 39 H 1.09001 * 109.47281 * 29.99770 * 11 10 8 40 40 H 1.09003 * 109.46865 * 149.99881 * 11 10 8 41 41 H 1.09003 * 109.47195 * 150.00238 * 12 10 8 42 42 H 1.09005 * 109.47128 * 30.00039 * 12 10 8 43 43 H 1.09004 * 114.16574 * 254.43618 * 15 13 12 44 44 H 1.08992 * 114.17405 * 26.95420 * 15 13 12 45 45 H 1.08993 * 113.47199 * 219.21115 * 16 15 13 46 46 H 1.09000 * 113.47645 * 88.73812 * 16 15 13 47 47 H 1.08998 * 109.47190 * 50.00085 * 18 17 13 48 48 H 1.08997 * 109.47280 * 290.00075 * 18 17 13 49 49 H 0.97000 * 120.00327 * 0.02562 * 21 19 18 50 50 H 0.97005 * 120.00032 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8513 0.5683 0.8411 6 8 3.9648 0.5796 -1.2218 7 6 4.0463 -0.8461 -1.1670 8 6 4.1480 2.5559 0.1231 9 8 4.8062 3.0106 -0.7884 10 7 3.9643 3.2772 1.2468 11 6 3.1696 2.7278 2.3481 12 6 4.5594 4.6105 1.3669 13 6 5.9573 4.4919 1.9773 14 1 6.6983 4.1247 1.2673 15 6 6.4045 5.7526 2.7307 16 6 6.9980 4.7409 3.7212 17 7 5.9763 3.7787 3.2680 18 6 6.5490 2.4342 3.1181 19 6 6.7794 1.8317 4.4801 20 8 6.4950 2.4606 5.4775 21 7 7.3014 0.5941 4.5898 22 6 7.5116 0.0461 5.8289 23 1 7.2584 0.6060 6.7170 24 6 8.0493 -1.2301 5.9420 25 7 8.3570 -1.9117 4.8614 26 14 8.3283 -1.9798 7.6301 27 1 8.9011 -3.3415 7.4785 28 1 9.2713 -1.1291 8.3998 29 1 7.0345 -2.0648 8.3540 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8464 -0.8901 35 1 4.7575 -1.1399 -0.3949 36 1 3.0646 -1.2573 -0.9321 37 1 4.3794 -1.2284 -2.1318 38 1 2.1242 3.0067 2.2162 39 1 3.2580 1.6414 2.3532 40 1 3.5354 3.1266 3.2943 41 1 3.9340 5.2310 2.0088 42 1 4.6315 5.0664 0.3794 43 1 7.1484 6.3483 2.2017 44 1 5.5841 6.3468 3.1329 45 1 6.8840 5.0363 4.7641 46 1 8.0167 4.4400 3.4765 47 1 7.4974 2.5006 2.5850 48 1 5.8589 1.8060 2.5550 49 1 7.5293 0.0912 3.7922 50 1 8.7327 -2.8025 4.9404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656092146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:34 Heat of formation + Delta-G solvation = -128.253619 kcal Electronic energy + Delta-G solvation = -32167.723520 eV Core-core repulsion = 27810.629283 eV Total energy + Delta-G solvation = -4357.094237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.87492 -40.97729 -39.62167 -39.09201 -37.98753 -36.54204 -35.95188 -33.35520 -32.62800 -31.82851 -29.63165 -28.09409 -27.54518 -27.50606 -26.84422 -25.37163 -25.02906 -23.59123 -21.15035 -20.90102 -20.35143 -19.93097 -18.63567 -18.07831 -17.81319 -17.66083 -17.16648 -16.89867 -16.80609 -16.71631 -16.43205 -16.23992 -15.80358 -15.63580 -15.41871 -15.13831 -14.92376 -14.80002 -14.22951 -14.05427 -14.00490 -13.77235 -13.63571 -13.53529 -13.08061 -12.93580 -12.88343 -12.81688 -12.57067 -12.46436 -12.42419 -12.38068 -12.17073 -12.14812 -11.94432 -11.65260 -11.48983 -11.04825 -10.76448 -10.52836 -10.42532 -10.04417 -9.93932 -9.53756 -8.47741 -5.97242 1.34995 1.38413 1.40667 1.51640 1.64873 2.00660 2.26982 2.65760 2.76825 2.88307 3.17474 3.30774 3.52185 3.60007 3.70644 3.82795 3.85170 4.14112 4.14883 4.20734 4.22407 4.30985 4.33398 4.38368 4.42409 4.43165 4.49937 4.54134 4.58445 4.62282 4.64353 4.65068 4.83921 4.84743 4.87266 4.91051 5.00112 5.03401 5.23546 5.33175 5.39106 5.45520 5.88738 5.94851 6.05380 6.07764 6.27950 6.56547 7.00974 7.10097 7.52020 8.06876 8.69413 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008540 B = 0.003702 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.068766 B = 7562.379527 C = 9644.596954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.048 3.952 4 C 0.073 3.927 5 H 0.095 0.905 6 O -0.383 6.383 7 C 0.027 3.973 8 C 0.516 3.484 9 O -0.557 6.557 10 N -0.595 5.595 11 C 0.069 3.931 12 C 0.138 3.862 13 C 0.005 3.995 14 H 0.065 0.935 15 C -0.110 4.110 16 C 0.001 3.999 17 N -0.443 5.443 18 C 0.030 3.970 19 C 0.446 3.554 20 O -0.610 6.610 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.081 0.919 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.272 1.272 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.114 0.886 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.089 0.911 49 H 0.392 0.608 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.186 8.530 -10.904 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.029 4.029 4 C 0.011 3.989 5 H 0.112 0.888 6 O -0.301 6.301 7 C -0.069 4.069 8 C 0.303 3.697 9 O -0.435 6.435 10 N -0.328 5.328 11 C -0.073 4.073 12 C 0.015 3.985 13 C -0.105 4.105 14 H 0.083 0.917 15 C -0.148 4.148 16 C -0.128 4.128 17 N -0.165 5.165 18 C -0.102 4.102 19 C 0.233 3.767 20 O -0.495 6.495 21 N -0.212 5.212 22 C -0.462 4.462 23 H 0.099 0.901 24 C -0.211 4.211 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.196 1.196 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.130 0.870 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.132 0.868 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.107 0.893 49 H 0.226 0.774 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.427 8.776 -10.520 19.895 hybrid contribution 1.240 -1.213 0.149 1.741 sum -13.187 7.563 -10.370 18.402 Atomic orbital electron populations 1.22969 0.78925 1.04072 1.01103 1.87838 1.21935 1.27024 1.95634 1.23075 0.90802 0.86210 1.02835 1.21986 0.94225 0.92864 0.89821 0.88780 1.87930 1.88236 1.21710 1.32241 1.23058 1.01611 0.78952 1.03235 1.20350 0.80636 0.86457 0.82274 1.90682 1.41157 1.71319 1.40391 1.47755 1.51739 1.17853 1.15461 1.22202 0.95816 0.99370 0.89961 1.21605 0.92035 0.82827 1.01992 1.23939 0.98512 0.96020 0.92044 0.91665 1.23160 1.01714 0.94600 0.95333 1.23617 0.94310 0.93801 1.01088 1.68757 1.35259 0.98361 1.14158 1.22228 0.99460 0.94574 0.93900 1.20492 0.82397 0.82448 0.91369 1.90487 1.56690 1.62399 1.39969 1.41960 1.56056 1.14481 1.08654 1.19627 1.41075 0.99583 0.85911 0.90078 1.26045 0.96133 0.96220 1.02748 1.69680 1.43362 1.13261 1.29913 0.84995 0.78779 0.77376 0.77236 1.19612 1.19714 1.19470 0.92561 0.93232 0.88359 0.89142 0.92162 0.94219 0.91701 0.88167 0.89415 0.91637 0.89700 0.87042 0.89361 0.88499 0.86800 0.91016 0.92738 0.92552 0.89260 0.77445 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -8.22 8.83 -144.34 -1.27 -9.49 16 3 C 0.05 0.95 5.34 71.98 0.38 1.33 16 4 C 0.07 1.86 2.10 29.85 0.06 1.92 16 5 H 0.09 2.40 6.77 -2.38 -0.02 2.39 16 6 O -0.38 -11.35 9.88 -125.58 -1.24 -12.59 16 7 C 0.03 0.65 10.71 113.37 1.21 1.86 16 8 C 0.52 14.43 7.10 87.65 0.62 15.06 16 9 O -0.56 -19.74 16.09 15.97 0.26 -19.48 16 10 N -0.60 -13.49 2.70 -846.75 -2.29 -15.78 16 11 C 0.07 1.34 8.43 127.77 1.08 2.41 16 12 C 0.14 2.81 5.56 86.38 0.48 3.29 16 13 C 0.01 0.13 3.37 42.20 0.14 0.27 16 14 H 0.07 1.79 7.77 -2.39 -0.02 1.77 16 15 C -0.11 -2.15 8.00 30.94 0.25 -1.91 16 16 C 0.00 0.03 6.71 83.58 0.56 0.59 16 17 N -0.44 -13.62 4.60 -906.69 -4.17 -17.79 16 18 C 0.03 1.11 5.31 85.56 0.45 1.56 16 19 C 0.45 21.26 7.62 87.66 0.67 21.93 16 20 O -0.61 -32.96 15.34 -3.07 -0.05 -33.00 16 21 N -0.57 -29.80 5.29 -306.99 -1.62 -31.42 16 22 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 24 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 25 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 26 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.39 5.07 -2.39 -0.01 1.37 16 34 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.04 0.96 8.09 -2.38 -0.02 0.94 16 36 H 0.06 1.44 6.40 -2.39 -0.02 1.43 16 37 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.09 1.15 6.95 -2.39 -0.02 1.13 16 39 H 0.06 1.35 6.11 -2.39 -0.01 1.33 16 40 H 0.08 1.98 7.21 -2.39 -0.02 1.96 16 41 H 0.11 1.73 7.80 -2.39 -0.02 1.71 16 42 H 0.09 1.83 7.42 -2.38 -0.02 1.82 16 43 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.11 1.82 7.93 -2.39 -0.02 1.80 16 45 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 46 H 0.05 1.68 7.70 -2.39 -0.02 1.66 16 47 H 0.06 2.00 7.56 -2.39 -0.02 1.99 16 48 H 0.09 3.11 7.85 -2.39 -0.02 3.09 16 49 H 0.39 19.81 7.90 -92.71 -0.73 19.07 16 50 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -74.40 404.07 0.59 -73.81 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: 0.22 Total: 39.02 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: 8.44 Total: 31.74 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -7.80 Total: -114.76 kcal Atomic # 8 Polarization: -72.26 SS G_CDS: -2.31 Total: -74.57 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -74.40 0.59 -73.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656092146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.439 kcal (2) G-P(sol) polarization free energy of solvation -74.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds