Wall clock time and date at job start Wed Apr 1 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47419 * 2 1 4 4 N 1.46897 * 109.47484 * 180.22282 * 3 2 1 5 5 C 1.46902 * 111.00013 * 199.49140 * 4 3 2 6 6 C 1.52994 * 109.47152 * 66.04525 * 5 4 3 7 7 N 1.46500 * 109.47012 * 180.02562 * 6 5 4 8 8 C 1.34780 * 120.00019 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99870 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00075 * 179.97438 * 8 7 6 11 11 H 1.09008 * 109.52068 * 55.00516 * 10 8 7 12 12 C 1.53137 * 109.52858 * 294.87499 * 10 8 7 13 13 O 1.43075 * 109.15331 * 184.78530 * 12 10 8 14 14 C 1.43074 * 113.58918 * 57.94825 * 13 12 10 15 15 C 1.53142 * 109.15445 * 302.04755 * 14 13 12 16 16 O 1.43071 * 109.52513 * 175.12686 * 10 8 7 17 17 C 1.46904 * 110.99547 * 75.53886 * 4 3 2 18 18 C 1.50703 * 109.46675 * 195.62221 * 17 4 3 19 19 O 1.21293 * 119.99811 * 6.00537 * 18 17 4 20 20 N 1.34771 * 120.00120 * 185.99976 * 18 17 4 21 21 C 1.37097 * 120.00622 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99443 * 0.02562 * 21 20 18 23 23 C 1.38941 * 120.00246 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00206 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99971 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47426 * 89.99995 * 25 23 21 27 27 H 1.48508 * 109.47096 * 210.00061 * 25 23 21 28 28 H 1.48507 * 109.47047 * 329.99793 * 25 23 21 29 29 H 1.08998 * 109.46652 * 299.99704 * 1 2 3 30 30 H 1.08999 * 109.46587 * 59.99824 * 1 2 3 31 31 H 1.08998 * 109.46964 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47346 * 240.00035 * 2 1 3 33 33 H 1.08994 * 109.47293 * 120.00141 * 2 1 3 34 34 H 1.09002 * 109.46586 * 60.22026 * 3 2 1 35 35 H 1.08998 * 109.47147 * 300.22681 * 3 2 1 36 36 H 1.08998 * 109.47087 * 186.04915 * 5 4 3 37 37 H 1.09004 * 109.46786 * 306.04666 * 5 4 3 38 38 H 1.08998 * 109.47443 * 300.00172 * 6 5 4 39 39 H 1.09004 * 109.47160 * 60.00370 * 6 5 4 40 40 H 0.96997 * 120.00367 * 0.02562 * 7 6 5 41 41 H 1.09010 * 109.52240 * 304.68360 * 12 10 8 42 42 H 1.08997 * 109.52470 * 64.87788 * 12 10 8 43 43 H 1.08999 * 109.52651 * 61.95756 * 14 13 12 44 44 H 1.09002 * 109.52058 * 182.08211 * 14 13 12 45 45 H 1.08997 * 109.52407 * 175.22003 * 15 14 13 46 46 H 1.09005 * 109.52345 * 295.34576 * 15 14 13 47 47 H 1.08993 * 109.47237 * 315.61849 * 17 4 3 48 48 H 1.09000 * 109.46935 * 75.62593 * 17 4 3 49 49 H 0.97004 * 119.99499 * 0.02562 * 20 18 17 50 50 H 0.97002 * 119.99821 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0054 5 6 4.0372 2.7348 0.4520 6 6 3.6786 2.9397 1.9251 7 7 4.2047 4.2287 2.3810 8 6 4.0088 4.6242 3.6545 9 8 3.3974 3.9127 4.4231 10 6 4.5506 5.9499 4.1236 11 1 4.1837 6.7441 3.4733 12 6 6.0811 5.9209 4.0825 13 8 6.5887 7.1398 4.6336 14 6 6.1597 7.3833 5.9766 15 6 4.6291 7.4124 6.0177 16 8 4.1203 6.1943 5.4660 17 6 4.0305 1.1017 -1.3358 18 6 5.4885 0.7364 -1.2254 19 8 6.0114 0.6518 -0.1342 20 7 6.2111 0.5037 -2.3389 21 6 7.5375 0.1719 -2.2385 22 1 8.0032 0.0966 -1.2671 23 6 8.2826 -0.0675 -3.3866 24 7 7.7160 0.0246 -4.5687 25 14 10.0897 -0.5203 -3.2498 26 1 10.2244 -1.9961 -3.1542 27 1 10.8142 -0.0339 -4.4514 28 1 10.6671 0.1092 -2.0350 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6800 1.9551 0.8920 35 1 1.6735 1.9575 -0.8879 36 1 5.1210 2.7456 0.3369 37 1 3.6006 3.5368 -0.1433 38 1 2.5947 2.9289 2.0402 39 1 4.1152 2.1377 2.5203 40 1 4.6941 4.7976 1.7664 41 1 6.4454 5.0768 4.6683 42 1 6.4160 5.8206 3.0501 43 1 6.5265 6.5885 6.6260 44 1 6.5524 8.3417 6.3163 45 1 4.2942 7.5127 7.0501 46 1 4.2649 8.2572 5.4329 47 1 3.4736 0.2559 -1.7386 48 1 3.9201 1.9590 -1.9998 49 1 5.7928 0.5717 -3.2115 50 1 8.2363 -0.1422 -5.3702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663653323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:27 Heat of formation + Delta-G solvation = -154.219437 kcal Electronic energy + Delta-G solvation = -30438.752795 eV Core-core repulsion = 26080.532596 eV Total energy + Delta-G solvation = -4358.220199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.75233 -39.28568 -38.69781 -37.07130 -36.38058 -34.92226 -33.93817 -33.03733 -32.19040 -31.24672 -29.66810 -28.28908 -27.29365 -25.57249 -25.02681 -23.88555 -22.26792 -21.81255 -20.75406 -20.63895 -19.15883 -17.95134 -17.86637 -17.36266 -16.90253 -16.40419 -16.30897 -15.86347 -15.80962 -15.34568 -15.06866 -14.98753 -14.68963 -14.50101 -14.28011 -13.94885 -13.80190 -13.59171 -13.42732 -13.22866 -13.03517 -12.71845 -12.55851 -12.02069 -11.99510 -11.94471 -11.66683 -11.51284 -11.43156 -11.24308 -11.10075 -11.02015 -10.99112 -10.79132 -10.43524 -10.40717 -10.22918 -9.96054 -9.58941 -9.49896 -9.15204 -8.48425 -7.99453 -7.93723 -6.42968 -3.83748 2.37051 2.49639 3.16767 3.25597 3.26635 3.30924 3.54262 3.89896 3.97065 4.10413 4.21799 4.43000 4.47777 4.56627 4.67841 4.77536 4.89180 4.93507 5.02534 5.04023 5.14284 5.18303 5.22418 5.28047 5.31019 5.36099 5.39756 5.49227 5.53091 5.68503 5.78218 5.80765 5.89538 6.05338 6.07320 6.12087 6.20651 6.26029 6.28698 6.41876 6.49450 6.51444 7.16441 7.28983 7.30585 7.53953 8.01925 8.05213 8.60836 9.17315 9.53627 10.05546 10.74799 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008317 B = 0.002620 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.992012 B =10682.767828 C =13657.270771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.049 3.951 4 N -0.511 5.511 5 C 0.049 3.951 6 C 0.126 3.874 7 N -0.722 5.722 8 C 0.522 3.478 9 O -0.514 6.514 10 C 0.039 3.961 11 H 0.094 0.906 12 C 0.036 3.964 13 O -0.372 6.372 14 C 0.020 3.980 15 C 0.024 3.976 16 O -0.351 6.351 17 C 0.046 3.954 18 C 0.442 3.558 19 O -0.575 6.575 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.097 0.903 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.401 0.599 41 H 0.071 0.929 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.063 0.937 47 H 0.092 0.908 48 H 0.048 0.952 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 14.099 11.876 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.079 4.079 4 N -0.235 5.235 5 C -0.080 4.080 6 C 0.003 3.997 7 N -0.376 5.376 8 C 0.305 3.695 9 O -0.388 6.388 10 C -0.023 4.023 11 H 0.112 0.888 12 C -0.042 4.042 13 O -0.291 6.291 14 C -0.057 4.057 15 C -0.053 4.053 16 O -0.269 6.269 17 C -0.085 4.085 18 C 0.227 3.773 19 O -0.458 6.458 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.235 0.765 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.083 0.917 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.082 0.918 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.050 13.115 13.327 21.228 hybrid contribution 0.594 0.714 -1.545 1.803 sum -9.456 13.829 11.782 20.481 Atomic orbital electron populations 1.21739 0.95976 1.01607 1.01457 1.21518 0.94747 0.96471 1.03172 1.22301 0.87366 0.97498 1.00711 1.61363 1.06338 1.29877 1.25891 1.22218 1.02680 0.89690 0.93396 1.21385 0.98738 0.84255 0.95313 1.45823 1.58160 1.22193 1.11443 1.19824 0.80566 0.86903 0.82168 1.90748 1.39724 1.54595 1.53768 1.22576 0.95927 0.96897 0.86912 0.88804 1.23182 0.91189 0.88246 1.01541 1.88134 1.71858 1.40571 1.28519 1.23327 0.94753 1.03177 0.84474 1.23348 0.94069 0.87252 1.00678 1.88236 1.71474 1.40922 1.26223 1.21916 0.96413 1.00904 0.89274 1.19771 0.87410 0.84744 0.85332 1.90526 1.71979 1.56512 1.26795 1.41889 1.10280 1.61027 1.07130 1.19678 0.84870 1.43419 0.94750 0.87950 1.25246 1.00480 0.97576 0.94646 1.69610 1.37438 1.49737 0.97613 0.85878 0.81959 0.78788 0.77786 1.20408 1.20969 1.19430 0.92857 0.93040 0.92645 0.91836 0.90926 0.90663 0.94859 0.88462 0.95077 0.91528 0.89832 0.76498 0.91041 0.86775 0.91694 0.87387 0.87149 0.91843 0.88974 0.93403 0.77563 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.45 6.05 -26.73 -0.16 -1.61 16 3 C 0.05 0.61 4.84 -3.82 -0.02 0.59 16 4 N -0.51 -7.92 4.03 -236.07 -0.95 -8.87 16 5 C 0.05 0.68 4.72 -3.83 -0.02 0.67 16 6 C 0.13 1.69 5.65 -4.04 -0.02 1.67 16 7 N -0.72 -8.11 5.52 -60.29 -0.33 -8.44 16 8 C 0.52 6.78 7.18 -10.98 -0.08 6.71 16 9 O -0.51 -9.00 16.51 -14.26 -0.24 -9.23 16 10 C 0.04 0.40 3.25 -27.81 -0.09 0.31 16 11 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 12 C 0.04 0.34 6.29 37.23 0.23 0.57 16 13 O -0.37 -3.63 10.85 -48.76 -0.53 -4.16 16 14 C 0.02 0.14 7.05 37.23 0.26 0.41 16 15 C 0.02 0.18 7.05 37.23 0.26 0.44 16 16 O -0.35 -4.13 10.03 -62.49 -0.63 -4.76 16 17 C 0.05 0.78 5.28 -4.97 -0.03 0.75 16 18 C 0.44 10.01 7.29 -10.99 -0.08 9.93 16 19 O -0.57 -14.95 14.77 5.55 0.08 -14.86 16 20 N -0.57 -13.92 5.29 -10.97 -0.06 -13.98 16 21 C -0.30 -8.11 9.68 -14.94 -0.14 -8.25 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.18 13.05 55.49 0.72 -23.45 16 25 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.80 6.74 -51.93 -0.35 0.45 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.87 5.88 -51.93 -0.31 0.57 16 35 H 0.03 0.38 8.00 -51.93 -0.42 -0.04 16 36 H 0.10 1.64 6.52 -51.93 -0.34 1.30 16 37 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 38 H 0.07 0.87 6.25 -51.93 -0.32 0.55 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.40 3.37 8.39 -40.82 -0.34 3.03 16 41 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 42 H 0.11 0.87 8.06 -51.93 -0.42 0.45 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 1.44 6.52 -51.93 -0.34 1.10 16 48 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 49 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 50 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 406.14 15.07 6.12 6.12 Total: -1.00 -34.61 406.14 -8.60 -43.21 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -8.16 Total: 11.08 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 0.39 Total: 11.58 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.62 Total: -54.74 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.31 Total: -33.01 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.61 -8.60 -43.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663653323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.009 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds