Wall clock time and date at job start Wed Apr 1 2020 01:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47227 * 2 1 4 4 H 1.09002 * 109.47509 * 305.27657 * 3 2 1 5 5 O 1.42904 * 109.47145 * 65.27561 * 3 2 1 6 6 C 1.42893 * 114.00134 * 209.39720 * 5 3 2 7 7 C 1.50705 * 109.47202 * 185.27231 * 3 2 1 8 8 O 1.21281 * 120.00018 * 245.00269 * 7 3 2 9 9 N 1.34776 * 119.99719 * 64.99984 * 7 3 2 10 10 C 1.46506 * 119.99836 * 179.97438 * 9 7 3 11 11 C 1.53002 * 109.46771 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.50642 * 305.08892 * 11 10 9 13 13 C 1.53098 * 109.50174 * 185.00311 * 11 10 9 14 14 N 1.47017 * 109.25687 * 183.17671 * 13 11 10 15 15 C 1.46899 * 111.00175 * 182.39070 * 14 13 11 16 16 C 1.50698 * 109.47187 * 169.99668 * 15 14 13 17 17 O 1.21292 * 119.99732 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99688 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99601 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00239 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00093 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00001 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00185 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47290 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47124 * 120.00311 * 23 21 19 26 26 H 1.48506 * 109.47219 * 239.99853 * 23 21 19 27 27 C 1.47017 * 110.75131 * 58.61188 * 14 13 11 28 28 C 1.53090 * 109.26131 * 301.38446 * 27 14 13 29 29 O 1.43014 * 109.25895 * 56.84963 * 28 27 14 30 30 H 1.08990 * 109.47369 * 174.89037 * 1 2 3 31 31 H 1.09003 * 109.46859 * 294.89368 * 1 2 3 32 32 H 1.09008 * 109.47265 * 54.88776 * 1 2 3 33 33 H 1.08998 * 109.47038 * 240.00222 * 2 1 3 34 34 H 1.08998 * 109.47085 * 120.00288 * 2 1 3 35 35 H 1.09004 * 109.47149 * 184.84231 * 6 5 3 36 36 H 1.09007 * 109.47495 * 304.84658 * 6 5 3 37 37 H 1.08999 * 109.47400 * 64.84661 * 6 5 3 38 38 H 0.97002 * 120.00280 * 0.02562 * 9 7 3 39 39 H 1.09004 * 109.46870 * 60.00477 * 10 9 7 40 40 H 1.08998 * 109.46864 * 300.00492 * 10 9 7 41 41 H 1.08995 * 109.50862 * 63.23860 * 13 11 10 42 42 H 1.09005 * 109.53982 * 303.12803 * 13 11 10 43 43 H 1.09005 * 109.47099 * 49.99616 * 15 14 13 44 44 H 1.09001 * 109.46944 * 290.00211 * 15 14 13 45 45 H 0.96992 * 120.00421 * 0.02562 * 18 16 15 46 46 H 0.96998 * 120.00672 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.50292 * 61.32359 * 27 14 13 48 48 H 1.09001 * 109.50085 * 181.44945 * 27 14 13 49 49 H 1.08997 * 109.50962 * 296.91654 * 28 27 14 50 50 H 1.08996 * 109.54504 * 176.80534 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9829 -0.8390 5 8 1.6675 2.0794 1.2238 6 6 1.4742 3.4906 1.1092 7 6 3.5414 1.4445 -0.1306 8 8 4.2286 1.8597 0.7784 9 7 4.1204 0.9847 -1.2574 10 6 5.5799 0.9871 -1.3846 11 6 5.9738 0.4190 -2.7495 12 1 5.5273 -0.5672 -2.8758 13 6 7.4981 0.3048 -2.8350 14 7 7.8744 -0.1694 -4.1748 15 6 9.3287 -0.3472 -4.2811 16 6 9.6549 -1.0600 -5.5682 17 8 8.7635 -1.3872 -6.3229 18 7 10.9371 -1.3338 -5.8806 19 6 11.2338 -1.9818 -7.0518 20 1 10.4402 -2.2725 -7.7242 21 6 12.5557 -2.2636 -7.3742 22 7 13.5213 -1.9095 -6.5562 23 14 12.9601 -3.1459 -8.9702 24 1 11.7044 -3.4330 -9.7090 25 1 13.8380 -2.2851 -9.8029 26 1 13.6596 -4.4205 -8.6678 27 6 7.3787 0.7487 -5.2106 28 6 5.8556 0.8584 -5.1012 29 8 5.5073 1.2904 -3.7832 30 1 -0.3633 -1.0235 -0.0915 31 1 -0.3633 0.4326 0.9322 32 1 -0.3634 0.5911 -0.8407 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.2783 3.9117 2.0953 36 1 2.3710 3.9474 0.6906 37 1 0.6258 3.6891 0.4543 38 1 3.5708 0.6529 -1.9846 39 1 6.0143 0.3729 -0.5959 40 1 5.9506 2.0083 -1.2957 41 1 7.8527 -0.4027 -2.0856 42 1 7.9475 1.2815 -2.6551 43 1 9.6851 -0.9387 -3.4378 44 1 9.8155 0.6280 -4.2723 45 1 11.6498 -1.0724 -5.2769 46 1 14.4442 -2.1059 -6.7814 47 1 7.8257 1.7327 -5.0688 48 1 7.6462 0.3650 -6.1951 49 1 5.4057 -0.1151 -5.2959 50 1 5.4889 1.5812 -5.8299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666691002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:54 Heat of formation + Delta-G solvation = -158.056452 kcal Electronic energy + Delta-G solvation = -30226.441184 eV Core-core repulsion = 25868.054599 eV Total energy + Delta-G solvation = -4358.386585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.47376 -39.72346 -38.19253 -37.72858 -35.51503 -34.99291 -33.99230 -33.86561 -31.67138 -31.30217 -29.15603 -28.48122 -27.09334 -26.01919 -24.94881 -23.82970 -22.76788 -22.25047 -20.92272 -20.20783 -19.26519 -18.02163 -17.83113 -17.43045 -16.75689 -16.22458 -16.01327 -15.98136 -15.53276 -15.19604 -15.07540 -14.77789 -14.73039 -14.45050 -14.28417 -14.09704 -13.91631 -13.61742 -13.53096 -13.31948 -13.08366 -12.73796 -12.44211 -12.36251 -12.04544 -11.92184 -11.74939 -11.57777 -11.55517 -11.29429 -11.25292 -11.21252 -10.97666 -10.89164 -10.56055 -10.37841 -10.27130 -9.77707 -9.55961 -9.51989 -9.34508 -8.52520 -8.05630 -7.96504 -6.46220 -3.87343 2.31903 2.71549 3.12903 3.23980 3.30622 3.37847 3.55928 3.80001 3.85632 4.17838 4.29494 4.42723 4.49392 4.67785 4.80258 4.81739 4.91149 4.93620 4.99419 5.05115 5.08784 5.14014 5.19919 5.29567 5.32084 5.34244 5.36539 5.48768 5.51004 5.51840 5.59180 5.63336 5.74424 5.78989 5.82865 5.83670 6.05824 6.10933 6.20047 6.24705 6.60311 7.02239 7.08669 7.20396 7.23734 7.50996 7.94095 8.01338 8.56173 9.13172 9.49038 10.00079 10.71424 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.030025 B = 0.001695 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.336840 B =16514.559971 C =16767.887882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.075 3.925 4 H 0.087 0.913 5 O -0.356 6.356 6 C 0.029 3.971 7 C 0.488 3.512 8 O -0.527 6.527 9 N -0.721 5.721 10 C 0.129 3.871 11 C 0.085 3.915 12 H 0.075 0.925 13 C 0.025 3.975 14 N -0.512 5.512 15 C 0.046 3.954 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.562 5.562 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.900 5.900 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.014 3.986 28 C 0.069 3.931 29 O -0.386 6.386 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.404 0.596 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.033 0.967 48 H 0.115 0.885 49 H 0.062 0.938 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.977 7.955 12.111 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.105 0.895 5 O -0.273 6.273 6 C -0.067 4.067 7 C 0.273 3.727 8 O -0.403 6.403 9 N -0.375 5.375 10 C 0.005 3.995 11 C 0.026 3.974 12 H 0.093 0.907 13 C -0.104 4.104 14 N -0.237 5.237 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.464 6.464 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.114 4.114 28 C -0.008 4.008 29 O -0.305 6.305 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.239 0.761 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.133 0.867 49 H 0.080 0.920 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.211 7.630 12.393 26.554 hybrid contribution 1.351 0.363 -0.946 1.689 sum -20.860 7.993 11.446 25.101 Atomic orbital electron populations 1.21724 0.94287 1.02130 1.02500 1.21598 0.97438 0.92705 1.03741 1.22133 0.90582 0.96610 0.89363 0.89517 1.87988 1.88261 1.20790 1.30295 1.22857 0.99693 0.81205 1.02962 1.21428 0.91397 0.77698 0.82171 1.90722 1.64792 1.45664 1.39101 1.45934 1.07792 1.65222 1.18511 1.21357 0.80404 1.02627 0.95086 1.22301 0.93849 0.94065 0.87155 0.90673 1.22676 0.95194 0.99905 0.92607 1.61782 1.12696 1.47497 1.01725 1.21875 0.87574 0.99881 0.99190 1.19678 0.83666 0.85592 0.88196 1.90473 1.46184 1.57300 1.52432 1.41874 1.05726 1.51500 1.20788 1.19747 0.92986 1.32829 0.97340 0.87814 1.25275 0.95245 0.97993 0.99426 1.69617 1.00336 1.47225 1.36993 0.85794 0.78633 0.78757 0.81119 1.19217 1.20764 1.20716 1.22965 0.95340 0.94042 0.99032 1.22681 0.94366 1.00527 0.83220 1.87938 1.77564 1.49896 1.15081 0.92084 0.91803 0.92663 0.89990 0.90252 0.89224 0.93656 0.93913 0.76130 0.89693 0.90602 0.89445 0.93853 0.89134 0.93252 0.77462 0.91869 0.94925 0.86743 0.91963 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.76 37.16 0.36 -0.43 16 2 C -0.12 -0.74 5.61 -26.73 -0.15 -0.90 16 3 C 0.07 0.61 2.51 -27.88 -0.07 0.54 16 4 H 0.09 0.52 7.83 -51.93 -0.41 0.11 16 5 O -0.36 -3.55 9.53 -55.09 -0.52 -4.07 16 6 C 0.03 0.22 10.79 101.05 1.09 1.31 16 7 C 0.49 5.25 7.10 -10.98 -0.08 5.17 16 8 O -0.53 -7.92 16.51 -14.30 -0.24 -8.15 16 9 N -0.72 -6.47 5.40 -60.29 -0.33 -6.80 16 10 C 0.13 1.30 5.35 -4.04 -0.02 1.27 16 11 C 0.08 0.92 2.84 -26.68 -0.08 0.85 16 12 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 13 C 0.03 0.31 4.93 -3.71 -0.02 0.29 16 14 N -0.51 -8.15 4.46 -235.75 -1.05 -9.20 16 15 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 16 C 0.44 10.12 7.49 -10.99 -0.08 10.03 16 17 O -0.58 -14.96 13.92 5.55 0.08 -14.88 16 18 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 19 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 20 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 23 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.01 0.22 5.29 -3.71 -0.02 0.20 16 28 C 0.07 0.86 7.01 37.20 0.26 1.12 16 29 O -0.39 -4.65 10.42 -35.23 -0.37 -5.01 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.39 7.97 -51.93 -0.41 -0.02 16 32 H 0.05 0.25 8.14 -51.92 -0.42 -0.18 16 33 H 0.08 0.39 7.76 -51.93 -0.40 -0.01 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.04 0.38 8.11 -51.92 -0.42 -0.04 16 37 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.40 2.79 8.18 -40.82 -0.33 2.45 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.41 8.04 -51.93 -0.42 0.99 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 45 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 46 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.11 2.13 5.88 -51.93 -0.31 1.83 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 409.78 15.07 6.18 6.18 Total: -1.00 -33.74 409.78 -8.13 -41.86 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.45 Total: 9.42 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 0.93 Total: 12.40 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.71 Total: -53.42 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.05 Total: -32.12 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.74 -8.13 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666691002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.193 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds