Wall clock time and date at job start Wed Apr 1 2020 02:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00110 * 2 1 4 4 H 1.08998 * 109.46829 * 29.99826 * 3 2 1 5 5 C 1.52998 * 109.47165 * 270.00143 * 3 2 1 6 6 C 1.50690 * 109.47086 * 149.99767 * 3 2 1 7 7 O 1.21284 * 120.00377 * 4.99939 * 6 3 2 8 8 N 1.34782 * 120.00376 * 184.99663 * 6 3 2 9 9 C 1.46492 * 120.00397 * 179.97438 * 8 6 3 10 10 C 1.53001 * 109.47050 * 175.23497 * 9 8 6 11 11 N 1.46902 * 109.53947 * 54.96985 * 10 9 8 12 12 C 1.46899 * 111.00342 * 58.25162 * 11 10 9 13 13 C 1.50695 * 109.47011 * 182.90160 * 12 11 10 14 14 O 1.21290 * 120.00299 * 0.02562 * 13 12 11 15 15 N 1.34784 * 119.99737 * 179.97438 * 13 12 11 16 16 C 1.37098 * 119.99644 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00000 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99728 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47205 * 89.99309 * 20 18 16 22 22 H 1.48501 * 109.47066 * 209.99858 * 20 18 16 23 23 H 1.48508 * 109.46821 * 329.99639 * 20 18 16 24 24 C 1.53179 * 109.61466 * 175.18961 * 10 9 8 25 25 C 1.53092 * 109.16405 * 176.89533 * 24 10 9 26 26 O 1.42901 * 109.41376 * 302.38943 * 25 24 10 27 27 C 1.42907 * 114.09818 * 61.15888 * 26 25 24 28 28 C 1.53093 * 109.41364 * 298.84115 * 27 26 25 29 29 H 1.09000 * 109.46823 * 59.99897 * 1 2 3 30 30 H 1.09003 * 109.47538 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47416 * 300.00315 * 1 2 3 32 32 H 1.08999 * 109.47302 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.46749 * 300.00048 * 5 3 2 34 34 H 1.09001 * 109.47248 * 59.99885 * 5 3 2 35 35 H 0.97004 * 119.98877 * 0.02562 * 8 6 3 36 36 H 1.09003 * 109.46685 * 55.23840 * 9 8 6 37 37 H 1.08999 * 109.47233 * 295.24153 * 9 8 6 38 38 H 1.00899 * 110.99347 * 182.20813 * 11 10 9 39 39 H 1.09006 * 109.46533 * 302.90231 * 12 11 10 40 40 H 1.08998 * 109.46998 * 62.89729 * 12 11 10 41 41 H 0.96994 * 119.99759 * 0.02562 * 15 13 12 42 42 H 0.96998 * 119.99771 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.52071 * 296.79559 * 24 10 9 44 44 H 1.08998 * 109.52439 * 56.98750 * 24 10 9 45 45 H 1.08996 * 109.48295 * 182.40562 * 25 24 10 46 46 H 1.09003 * 109.49131 * 62.37753 * 25 24 10 47 47 H 1.08997 * 109.48214 * 178.85930 * 27 26 25 48 48 H 1.09000 * 109.48871 * 58.82719 * 27 26 25 49 49 H 1.08996 * 109.52681 * 297.70686 * 28 27 26 50 50 H 1.09000 * 109.57470 * 177.54358 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3386 1.2638 0.7104 7 8 3.7896 0.2044 1.0915 8 7 4.0255 2.4039 0.9224 9 6 5.3165 2.3636 1.6135 10 6 5.9363 3.7624 1.6185 11 7 4.9875 4.7181 2.2056 12 6 4.6215 4.3242 3.5726 13 6 3.5956 5.2857 4.1147 14 8 3.2071 6.2081 3.4295 15 7 3.1089 5.1201 5.3606 16 6 2.1751 5.9946 5.8536 17 1 1.8299 6.8164 5.2437 18 6 1.6737 5.8242 7.1382 19 7 2.0942 4.8246 7.8804 20 14 0.4020 7.0160 7.8102 21 1 -0.9599 6.5243 7.4810 22 1 0.5489 7.1173 9.2845 23 1 0.6062 8.3541 7.1993 24 6 7.2273 3.7500 2.4428 25 6 7.8790 5.1337 2.3770 26 8 8.1295 5.4763 1.0124 27 6 6.9534 5.5497 0.2039 28 6 6.2645 4.1827 0.1825 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.6615 2.7669 -1.4425 33 1 2.8829 1.0774 -1.9563 34 1 1.2569 1.8014 -1.9563 35 1 3.6645 3.2512 0.6179 36 1 5.9833 1.6726 1.0976 37 1 5.1688 2.0279 2.6399 38 1 5.3604 5.6554 2.1869 39 1 4.2052 3.3168 3.5612 40 1 5.5083 4.3437 4.2061 41 1 3.4192 4.3823 5.9084 42 1 1.7439 4.7054 8.7771 43 1 6.9952 3.5057 3.4795 44 1 7.9117 3.0053 2.0365 45 1 8.8201 5.1188 2.9266 46 1 7.2107 5.8719 2.8203 47 1 7.2277 5.8344 -0.8118 48 1 6.2728 6.2932 0.6186 49 1 6.9294 3.4466 -0.2694 50 1 5.3439 4.2467 -0.3977 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671925679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:15 Heat of formation + Delta-G solvation = -159.233947 kcal Electronic energy + Delta-G solvation = -31951.855995 eV Core-core repulsion = 27593.418350 eV Total energy + Delta-G solvation = -4358.437645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70567 -39.66305 -38.16125 -37.66055 -36.39587 -34.15694 -33.80272 -31.97680 -31.48527 -31.24897 -31.03196 -27.59851 -26.94769 -26.60939 -24.37095 -24.27712 -23.54418 -22.50793 -20.33676 -19.45007 -19.06634 -17.99705 -17.54202 -17.06335 -16.86142 -16.18165 -15.97182 -15.78308 -15.62164 -15.35578 -14.91816 -14.85542 -14.65085 -14.54200 -14.20174 -14.03565 -13.73973 -13.48858 -13.35214 -13.03766 -12.73457 -12.60535 -12.45863 -12.30022 -12.24586 -12.02620 -11.87394 -11.60488 -11.47864 -11.45153 -11.30973 -11.10746 -10.85665 -10.49003 -10.43957 -10.26953 -10.12561 -9.66847 -9.56449 -9.50056 -9.01301 -8.59658 -8.21328 -8.02300 -6.46854 -3.88159 2.65057 2.83353 3.13516 3.22861 3.27956 3.71710 3.81344 3.83911 3.99960 4.21497 4.41868 4.47242 4.60772 4.65717 4.76207 4.81706 4.89309 5.03369 5.04678 5.12487 5.18173 5.20938 5.23816 5.32586 5.38103 5.40256 5.44172 5.51236 5.52979 5.54601 5.56908 5.63671 5.70871 5.83991 5.85815 5.87831 5.94616 6.02522 6.18209 6.42523 6.87066 7.01172 7.03438 7.41564 7.49773 7.57846 7.99850 8.26871 8.54557 9.11985 9.47975 9.98573 10.70615 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007016 B = 0.003938 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3989.998564 B = 7108.254960 C =10100.113546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.068 3.932 4 H 0.090 0.910 5 C -0.168 4.168 6 C 0.514 3.486 7 O -0.528 6.528 8 N -0.711 5.711 9 C 0.137 3.863 10 C 0.101 3.899 11 N -0.655 5.655 12 C 0.043 3.957 13 C 0.440 3.560 14 O -0.584 6.584 15 N -0.561 5.561 16 C -0.301 4.301 17 H 0.103 0.897 18 C 0.024 3.976 19 N -0.900 5.900 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.270 1.270 24 C -0.186 4.186 25 C 0.060 3.940 26 O -0.383 6.383 27 C 0.055 3.945 28 C -0.138 4.138 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.351 0.649 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.095 0.905 48 H 0.059 0.941 49 H 0.077 0.923 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 -4.782 -15.716 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.279 6.279 3 C 0.007 3.993 4 H 0.107 0.893 5 C -0.226 4.226 6 C 0.298 3.702 7 O -0.404 6.404 8 N -0.366 5.366 9 C 0.012 3.988 10 C 0.009 3.991 11 N -0.289 5.289 12 C -0.089 4.089 13 C 0.226 3.774 14 O -0.469 6.469 15 N -0.198 5.198 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.178 4.178 19 N -0.541 5.541 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.225 4.225 25 C -0.017 4.017 26 O -0.301 6.301 27 C -0.021 4.021 28 C -0.176 4.176 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.248 0.752 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.173 0.827 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.071 0.929 47 H 0.113 0.887 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.732 -5.400 -16.047 17.876 hybrid contribution -0.389 0.817 1.398 1.665 sum 5.343 -4.583 -14.650 16.253 Atomic orbital electron populations 1.22889 0.80610 1.03131 1.00239 1.88025 1.19678 1.25246 1.94957 1.21926 0.93762 0.86921 0.96736 0.89257 1.22209 1.03334 1.01999 0.95037 1.20340 0.86119 0.84084 0.79620 1.90709 1.69218 1.29971 1.50466 1.45741 1.21423 1.09728 1.59685 1.21343 0.84439 0.95175 0.97814 1.21238 0.90218 0.92702 0.94944 1.60273 1.43013 1.05466 1.20186 1.21794 0.97941 1.00097 0.89104 1.19734 0.86417 0.88052 0.83232 1.90518 1.63123 1.34614 1.58616 1.41864 1.37589 1.27824 1.12496 1.19683 1.16851 1.08466 0.98042 0.87924 1.25269 0.98826 0.97555 0.96187 1.69611 1.43885 1.29985 1.10580 0.85865 0.80297 0.80363 0.77807 1.20382 1.20899 1.19414 1.22857 0.98147 0.99382 1.02162 1.22551 1.01154 0.94504 0.83443 1.87929 1.31402 1.90379 1.20420 1.22645 0.87408 0.96217 0.95861 1.22200 1.01576 0.98399 0.95451 0.93884 0.89241 0.93554 0.90780 0.91244 0.91278 0.75235 0.90888 0.91305 0.82691 0.89302 0.93483 0.77502 0.91799 0.89945 0.90159 0.88566 0.92937 0.88733 0.92254 0.90470 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.36 -4.86 9.89 -55.09 -0.54 -5.40 16 3 C 0.07 0.80 3.13 -27.89 -0.09 0.71 16 4 H 0.09 0.96 7.79 -51.93 -0.40 0.55 16 5 C -0.17 -1.47 9.48 37.16 0.35 -1.12 16 6 C 0.51 7.29 7.18 -10.99 -0.08 7.22 16 7 O -0.53 -9.67 16.50 -14.31 -0.24 -9.91 16 8 N -0.71 -8.55 5.08 -60.30 -0.31 -8.85 16 9 C 0.14 1.61 4.00 -4.05 -0.02 1.59 16 10 C 0.10 1.08 0.35 -131.41 -0.05 1.03 16 11 N -0.66 -8.81 4.98 -101.03 -0.50 -9.31 16 12 C 0.04 0.69 5.39 -4.98 -0.03 0.66 16 13 C 0.44 9.75 7.83 -10.98 -0.09 9.66 16 14 O -0.58 -14.77 15.84 5.55 0.09 -14.68 16 15 N -0.56 -13.73 5.29 -10.96 -0.06 -13.79 16 16 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 17 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 18 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 20 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 C -0.19 -1.86 4.69 -26.59 -0.12 -1.99 16 25 C 0.06 0.63 6.58 37.21 0.24 0.88 16 26 O -0.38 -4.35 10.77 -35.23 -0.38 -4.73 16 27 C 0.06 0.54 6.58 37.21 0.24 0.78 16 28 C -0.14 -1.27 4.96 -26.59 -0.13 -1.40 16 29 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.07 0.54 7.92 -51.93 -0.41 0.13 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 35 H 0.41 4.57 7.22 -40.82 -0.29 4.28 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.91 6.61 -51.93 -0.34 0.57 16 38 H 0.35 5.02 5.24 -39.29 -0.21 4.82 16 39 H 0.09 1.42 6.23 -51.93 -0.32 1.09 16 40 H 0.05 0.69 6.45 -51.93 -0.33 0.36 16 41 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.08 0.85 6.37 -51.93 -0.33 0.52 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.60 6.87 -51.93 -0.36 0.24 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.62 6.76 -51.93 -0.35 0.27 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 0.72 7.40 -51.93 -0.38 0.33 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -33.35 397.47 -6.92 -40.27 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -7.77 Total: 16.59 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 1.10 Total: 11.61 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.14 Total: -55.36 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.07 Total: -34.73 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.35 -6.92 -40.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671925679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.959 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds