Wall clock time and date at job start Wed Apr 1 2020 02:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99795 * 2 1 4 4 H 1.08996 * 109.47402 * 330.00246 * 3 2 1 5 5 C 1.53008 * 109.46758 * 90.00199 * 3 2 1 6 6 C 1.50694 * 109.47012 * 209.99608 * 3 2 1 7 7 O 1.21284 * 120.00231 * 0.02562 * 6 3 2 8 8 N 1.34775 * 119.99892 * 179.97438 * 6 3 2 9 9 C 1.46506 * 120.00163 * 180.02562 * 8 6 3 10 10 C 1.52995 * 109.47277 * 175.28013 * 9 8 6 11 11 N 1.46898 * 109.54497 * 54.94386 * 10 9 8 12 12 C 1.46901 * 110.99737 * 58.36601 * 11 10 9 13 13 C 1.50695 * 109.47396 * 183.00237 * 12 11 10 14 14 O 1.21295 * 119.99919 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00550 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00292 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00365 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99896 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00077 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00124 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47334 * 89.99803 * 20 18 16 22 22 H 1.48509 * 109.47351 * 209.99555 * 20 18 16 23 23 H 1.48501 * 109.47047 * 329.99785 * 20 18 16 24 24 C 1.53178 * 109.54291 * 175.12596 * 10 9 8 25 25 C 1.53281 * 109.06296 * 176.84978 * 24 10 9 26 26 O 1.42909 * 109.46267 * 302.44751 * 25 24 10 27 27 C 1.42896 * 114.09978 * 61.15618 * 26 25 24 28 28 C 1.53095 * 109.41402 * 298.84436 * 27 26 25 29 29 H 1.09000 * 109.47442 * 59.99653 * 1 2 3 30 30 H 1.09003 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47435 * 300.00087 * 1 2 3 32 32 H 1.09001 * 109.46903 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.46656 * 299.99659 * 5 3 2 34 34 H 1.08996 * 109.47126 * 59.99878 * 5 3 2 35 35 H 0.97001 * 120.00034 * 0.02562 * 8 6 3 36 36 H 1.09001 * 109.47078 * 55.27733 * 9 8 6 37 37 H 1.09002 * 109.46527 * 295.27785 * 9 8 6 38 38 H 1.00905 * 111.00212 * 182.31490 * 11 10 9 39 39 H 1.08997 * 109.47189 * 303.00313 * 12 11 10 40 40 H 1.09002 * 109.47119 * 63.00235 * 12 11 10 41 41 H 0.97002 * 119.99844 * 0.02562 * 15 13 12 42 42 H 0.96995 * 120.00450 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.52491 * 296.83711 * 24 10 9 44 44 H 1.08996 * 109.52103 * 57.03034 * 24 10 9 45 45 H 1.08994 * 109.45962 * 182.44836 * 25 24 10 46 46 H 1.08999 * 109.46820 * 62.44478 * 25 24 10 47 47 H 1.08997 * 109.48340 * 178.85991 * 27 26 25 48 48 H 1.09005 * 109.49166 * 58.82863 * 27 26 25 49 49 H 1.08994 * 109.52344 * 297.70244 * 28 27 26 50 50 H 1.09007 * 109.57265 * 177.54296 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7713 1.4426 6 6 3.3386 1.2639 -0.7103 7 8 3.7472 0.2193 -1.1716 8 7 4.0721 2.3878 -0.8339 9 6 5.3633 2.3476 -1.5249 10 6 5.9305 3.7647 -1.6290 11 7 6.0010 4.3654 -0.2902 12 6 6.8359 3.5553 0.6069 13 6 6.8249 4.1610 1.9867 14 8 6.1848 5.1687 2.2016 15 7 7.5261 3.5832 2.9820 16 6 7.5165 4.1345 4.2372 17 1 6.9466 5.0318 4.4285 18 6 8.2391 3.5384 5.2634 19 7 8.2295 4.0666 6.4667 20 14 9.2242 1.9861 4.9327 21 1 10.6003 2.3533 4.5121 22 1 9.2868 1.1665 6.1695 23 1 8.5688 1.2044 3.8535 24 6 7.3335 3.7114 -2.2413 25 6 7.8593 5.1409 -2.4133 26 8 6.9545 5.8859 -3.2310 27 6 5.6396 6.0075 -2.6851 28 6 5.0243 4.6148 -2.5249 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.6605 2.7673 1.4426 33 1 1.2567 1.8014 1.9564 34 1 2.8829 1.0774 1.9564 35 1 3.7451 3.2234 -0.4653 36 1 5.2274 1.9362 -2.5251 37 1 6.0557 1.7193 -0.9646 38 1 6.3373 5.3155 -0.3374 39 1 6.4414 2.5403 0.6525 40 1 7.8580 3.5312 0.2288 41 1 8.0383 2.7775 2.8101 42 1 8.7342 3.6507 7.1830 43 1 7.9980 3.1537 -1.5815 44 1 7.2882 3.2209 -3.2136 45 1 8.8397 5.1125 -2.8887 46 1 7.9427 5.6173 -1.4365 47 1 5.0210 6.6032 -3.3562 48 1 5.6936 6.4951 -1.7117 49 1 4.9325 4.1425 -3.5029 50 1 4.0384 4.7015 -2.0682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671925680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:19 Heat of formation + Delta-G solvation = -151.691905 kcal Electronic energy + Delta-G solvation = -32121.260875 eV Core-core repulsion = 27763.150278 eV Total energy + Delta-G solvation = -4358.110597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77848 -39.71765 -38.34253 -37.71457 -36.47681 -34.21931 -33.87007 -32.06173 -31.69287 -31.40807 -31.14816 -27.62925 -26.98617 -26.80272 -24.31284 -24.26933 -23.52053 -22.55233 -20.36960 -19.50253 -19.19565 -18.49534 -17.58866 -17.14099 -16.81637 -16.27155 -15.93662 -15.91001 -15.76588 -15.33711 -15.05337 -14.95458 -14.74389 -14.60974 -14.28195 -14.15836 -13.69761 -13.39799 -13.23093 -12.99009 -12.71520 -12.67497 -12.50981 -12.44337 -12.38455 -12.15128 -12.00756 -11.92629 -11.58417 -11.54836 -11.31389 -11.21831 -10.93577 -10.63123 -10.54815 -10.16493 -10.02430 -9.72350 -9.62148 -9.54627 -9.08308 -8.71745 -8.33079 -8.22805 -6.36081 -3.87760 2.56596 2.80711 3.00374 3.03748 3.12893 3.65980 3.66735 3.76295 3.95524 4.06496 4.34023 4.40179 4.54077 4.60715 4.71550 4.77118 4.78086 4.85257 4.98345 5.08918 5.11381 5.14468 5.16261 5.30073 5.32111 5.37759 5.42732 5.45984 5.48573 5.52294 5.54940 5.60208 5.63107 5.72101 5.79194 5.84285 5.86850 5.95168 6.08131 6.35602 6.83346 6.88902 6.97748 7.32058 7.51532 7.52341 8.08455 8.20684 8.53696 8.89416 9.36983 9.75878 10.76810 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.006971 B = 0.004286 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4015.793610 B = 6530.806650 C = 9399.565546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.071 3.929 4 H 0.085 0.915 5 C -0.173 4.173 6 C 0.513 3.487 7 O -0.529 6.529 8 N -0.712 5.712 9 C 0.136 3.864 10 C 0.101 3.899 11 N -0.655 5.655 12 C 0.039 3.961 13 C 0.450 3.550 14 O -0.565 6.565 15 N -0.588 5.588 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.044 3.956 19 N -0.880 5.880 20 Si 0.877 3.123 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.185 4.185 25 C 0.060 3.940 26 O -0.382 6.382 27 C 0.055 3.945 28 C -0.138 4.138 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.411 0.589 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.353 0.647 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.077 0.923 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 -2.657 -18.687 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.010 3.990 4 H 0.103 0.897 5 C -0.230 4.230 6 C 0.298 3.702 7 O -0.404 6.404 8 N -0.367 5.367 9 C 0.012 3.988 10 C 0.009 3.991 11 N -0.289 5.289 12 C -0.093 4.093 13 C 0.236 3.764 14 O -0.447 6.447 15 N -0.227 5.227 16 C -0.435 4.435 17 H 0.137 0.863 18 C -0.160 4.160 19 N -0.519 5.519 20 Si 0.704 3.296 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.195 1.195 24 C -0.225 4.225 25 C -0.017 4.017 26 O -0.301 6.301 27 C -0.022 4.022 28 C -0.176 4.176 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.248 0.752 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.175 0.825 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.114 0.886 46 H 0.071 0.929 47 H 0.113 0.887 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.355 -3.097 -18.584 21.035 hybrid contribution 1.359 -0.675 0.193 1.530 sum -7.996 -3.772 -18.390 20.405 Atomic orbital electron populations 1.22865 0.80762 1.03116 1.00005 1.88044 1.19541 1.25350 1.94954 1.21932 0.93341 0.86619 0.97096 0.89692 1.22260 1.03490 1.02812 0.94482 1.20379 0.86133 0.83853 0.79832 1.90708 1.71644 1.30291 1.47805 1.45759 1.20497 1.11787 1.58614 1.21348 0.84803 0.95160 0.97494 1.21249 0.94257 0.94135 0.89498 1.60261 1.55855 1.06073 1.06717 1.21838 0.95904 0.98607 0.92960 1.19613 0.84254 0.87047 0.85516 1.90562 1.45012 1.26107 1.83062 1.42206 1.44633 1.25848 1.10050 1.19409 1.29383 1.11499 0.83160 0.86259 1.25028 0.97728 0.98120 0.95098 1.69613 1.41282 1.40060 1.00971 0.86707 0.80925 0.83274 0.78720 1.19615 1.20087 1.19459 1.22891 0.97933 0.98864 1.02854 1.22586 0.93317 0.90229 0.95566 1.87935 1.21093 1.73850 1.47181 1.22652 0.83750 0.96112 0.99651 1.22202 0.99602 0.96272 0.99554 0.93984 0.89268 0.93727 0.90166 0.91292 0.90933 0.75161 0.90851 0.91382 0.82511 0.89142 0.93361 0.79736 0.91555 0.90015 0.90111 0.88555 0.92905 0.88665 0.92188 0.90441 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.36 -4.70 9.88 -55.14 -0.54 -5.24 16 3 C 0.07 0.81 3.14 -27.88 -0.09 0.72 16 4 H 0.09 0.72 7.79 -51.93 -0.40 0.31 16 5 C -0.17 -1.92 9.42 37.16 0.35 -1.57 16 6 C 0.51 6.99 7.23 -10.99 -0.08 6.91 16 7 O -0.53 -9.36 16.50 -14.36 -0.24 -9.59 16 8 N -0.71 -8.09 5.01 -60.29 -0.30 -8.40 16 9 C 0.14 1.50 4.00 -4.04 -0.02 1.48 16 10 C 0.10 1.00 0.35 -131.42 -0.05 0.95 16 11 N -0.65 -8.26 4.98 -101.03 -0.50 -8.76 16 12 C 0.04 0.59 5.39 -4.98 -0.03 0.56 16 13 C 0.45 9.49 7.83 -10.99 -0.09 9.40 16 14 O -0.57 -14.01 15.84 5.54 0.09 -13.92 16 15 N -0.59 -13.46 5.09 -10.97 -0.06 -13.51 16 16 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 17 H 0.12 3.75 7.39 -52.48 -0.39 3.36 16 18 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 19 N -0.88 -25.28 13.96 55.50 0.77 -24.51 16 20 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 24 C -0.19 -1.71 4.70 -26.49 -0.12 -1.83 16 25 C 0.06 0.59 6.58 37.30 0.25 0.83 16 26 O -0.38 -4.14 10.77 -35.23 -0.38 -4.52 16 27 C 0.06 0.51 6.58 37.21 0.24 0.75 16 28 C -0.14 -1.19 4.96 -26.59 -0.13 -1.33 16 29 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 32 H 0.08 0.88 7.57 -51.93 -0.39 0.48 16 33 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.41 4.33 6.86 -40.82 -0.28 4.05 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.83 6.61 -51.93 -0.34 0.49 16 38 H 0.35 4.76 5.24 -39.29 -0.21 4.55 16 39 H 0.09 1.31 6.23 -51.93 -0.32 0.99 16 40 H 0.05 0.63 6.45 -51.93 -0.33 0.30 16 41 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.08 0.75 6.37 -51.93 -0.33 0.42 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.05 0.56 6.87 -51.93 -0.36 0.20 16 47 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.60 6.76 -51.93 -0.35 0.25 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.68 7.40 -51.93 -0.38 0.30 16 LS Contribution 393.56 15.07 5.93 5.93 Total: -1.00 -34.55 393.56 -6.55 -41.10 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -7.69 Total: 16.20 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 1.09 Total: 10.75 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.09 Total: -55.18 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.07 Total: -33.28 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.55 -6.55 -41.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671925680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.594 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds