Wall clock time and date at job start Wed Apr 1 2020 02:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99795 * 2 1 4 4 H 1.08996 * 109.47402 * 330.00246 * 3 2 1 5 5 C 1.53008 * 109.46758 * 90.00199 * 3 2 1 6 6 C 1.50694 * 109.47012 * 209.99608 * 3 2 1 7 7 O 1.21284 * 120.00231 * 0.02562 * 6 3 2 8 8 N 1.34775 * 119.99892 * 179.97438 * 6 3 2 9 9 C 1.46506 * 120.00163 * 180.02562 * 8 6 3 10 10 C 1.52995 * 109.47277 * 175.28013 * 9 8 6 11 11 N 1.46898 * 109.54497 * 54.94386 * 10 9 8 12 12 C 1.46901 * 110.99737 * 58.36601 * 11 10 9 13 13 C 1.50695 * 109.47396 * 183.00237 * 12 11 10 14 14 O 1.21295 * 119.99919 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00550 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00292 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00365 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99896 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00077 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00124 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47334 * 89.99803 * 20 18 16 22 22 H 1.48509 * 109.47351 * 209.99555 * 20 18 16 23 23 H 1.48501 * 109.47047 * 329.99785 * 20 18 16 24 24 C 1.53178 * 109.54291 * 175.12596 * 10 9 8 25 25 C 1.53281 * 109.06296 * 176.84978 * 24 10 9 26 26 O 1.42909 * 109.46267 * 302.44751 * 25 24 10 27 27 C 1.42896 * 114.09978 * 61.15618 * 26 25 24 28 28 C 1.53095 * 109.41402 * 298.84436 * 27 26 25 29 29 H 1.09000 * 109.47442 * 59.99653 * 1 2 3 30 30 H 1.09003 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47435 * 300.00087 * 1 2 3 32 32 H 1.09001 * 109.46903 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.46656 * 299.99659 * 5 3 2 34 34 H 1.08996 * 109.47126 * 59.99878 * 5 3 2 35 35 H 0.97001 * 120.00034 * 0.02562 * 8 6 3 36 36 H 1.09001 * 109.47078 * 55.27733 * 9 8 6 37 37 H 1.09002 * 109.46527 * 295.27785 * 9 8 6 38 38 H 1.00905 * 111.00212 * 182.31490 * 11 10 9 39 39 H 1.08997 * 109.47189 * 303.00313 * 12 11 10 40 40 H 1.09002 * 109.47119 * 63.00235 * 12 11 10 41 41 H 0.97002 * 119.99844 * 0.02562 * 15 13 12 42 42 H 0.96995 * 120.00450 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.52491 * 296.83711 * 24 10 9 44 44 H 1.08996 * 109.52103 * 57.03034 * 24 10 9 45 45 H 1.08994 * 109.45962 * 182.44836 * 25 24 10 46 46 H 1.08999 * 109.46820 * 62.44478 * 25 24 10 47 47 H 1.08997 * 109.48340 * 178.85991 * 27 26 25 48 48 H 1.09005 * 109.49166 * 58.82863 * 27 26 25 49 49 H 1.08994 * 109.52344 * 297.70244 * 28 27 26 50 50 H 1.09007 * 109.57265 * 177.54296 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7713 1.4426 6 6 3.3386 1.2639 -0.7103 7 8 3.7472 0.2193 -1.1716 8 7 4.0721 2.3878 -0.8339 9 6 5.3633 2.3476 -1.5249 10 6 5.9305 3.7647 -1.6290 11 7 6.0010 4.3654 -0.2902 12 6 6.8359 3.5553 0.6069 13 6 6.8249 4.1610 1.9867 14 8 6.1848 5.1687 2.2016 15 7 7.5261 3.5832 2.9820 16 6 7.5165 4.1345 4.2372 17 1 6.9466 5.0318 4.4285 18 6 8.2391 3.5384 5.2634 19 7 8.2295 4.0666 6.4667 20 14 9.2242 1.9861 4.9327 21 1 10.6003 2.3533 4.5121 22 1 9.2868 1.1665 6.1695 23 1 8.5688 1.2044 3.8535 24 6 7.3335 3.7114 -2.2413 25 6 7.8593 5.1409 -2.4133 26 8 6.9545 5.8859 -3.2310 27 6 5.6396 6.0075 -2.6851 28 6 5.0243 4.6148 -2.5249 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.6605 2.7673 1.4426 33 1 1.2567 1.8014 1.9564 34 1 2.8829 1.0774 1.9564 35 1 3.7451 3.2234 -0.4653 36 1 5.2274 1.9362 -2.5251 37 1 6.0557 1.7193 -0.9646 38 1 6.3373 5.3155 -0.3374 39 1 6.4414 2.5403 0.6525 40 1 7.8580 3.5312 0.2288 41 1 8.0383 2.7775 2.8101 42 1 8.7342 3.6507 7.1830 43 1 7.9980 3.1537 -1.5815 44 1 7.2882 3.2209 -3.2136 45 1 8.8397 5.1125 -2.8887 46 1 7.9427 5.6173 -1.4365 47 1 5.0210 6.6032 -3.3562 48 1 5.6936 6.4951 -1.7117 49 1 4.9325 4.1425 -3.5029 50 1 4.0384 4.7015 -2.0682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671925680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:18 Heat of formation + Delta-G solvation = -180.435744 kcal Electronic energy + Delta-G solvation = -32122.507302 eV Core-core repulsion = 27763.150278 eV Total energy + Delta-G solvation = -4359.357024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.70472 -40.70403 -40.00201 -38.60468 -37.46459 -36.01225 -35.06505 -33.75494 -32.97583 -32.26844 -31.98735 -28.52305 -28.29140 -27.68923 -25.81913 -25.15269 -24.46911 -23.39257 -21.35338 -21.28611 -20.35873 -20.04455 -18.51788 -18.14149 -17.96783 -17.23637 -17.06816 -16.84576 -16.76669 -16.65383 -16.29921 -15.93094 -15.82693 -15.72732 -15.43934 -15.12978 -14.91720 -14.78219 -14.39780 -14.28490 -14.02513 -13.85781 -13.57529 -13.43015 -13.32929 -13.18819 -13.08882 -12.93085 -12.75505 -12.58994 -12.42955 -12.26771 -12.11894 -12.00985 -11.76416 -11.51240 -11.30336 -11.05862 -10.57867 -10.49707 -10.37852 -10.24283 -10.06141 -9.44273 -8.41776 -6.01510 1.29082 1.32287 1.41206 1.54371 1.91460 1.95375 2.20710 2.62609 2.94633 3.03094 3.15158 3.31496 3.52111 3.63014 3.71409 3.81211 3.91930 3.99891 4.03175 4.09363 4.24308 4.30293 4.37158 4.45466 4.46204 4.51471 4.54677 4.58654 4.64063 4.67018 4.72147 4.78133 4.78819 4.85269 4.89338 5.06870 5.09050 5.17823 5.20220 5.39835 5.51878 5.85492 5.98525 6.06929 6.23762 6.25567 6.56611 6.58777 6.88332 7.21461 7.40064 7.95305 8.75571 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.006971 B = 0.004286 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4015.793610 B = 6530.806650 C = 9399.565546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.073 3.927 4 H 0.118 0.882 5 C -0.168 4.168 6 C 0.509 3.491 7 O -0.575 6.575 8 N -0.701 5.701 9 C 0.135 3.865 10 C 0.109 3.891 11 N -0.660 5.660 12 C 0.056 3.944 13 C 0.454 3.546 14 O -0.605 6.605 15 N -0.593 5.593 16 C -0.323 4.323 17 H 0.060 0.940 18 C -0.011 4.011 19 N -0.933 5.933 20 Si 0.956 3.044 21 H -0.256 1.256 22 H -0.277 1.277 23 H -0.238 1.238 24 C -0.181 4.181 25 C 0.058 3.942 26 O -0.395 6.395 27 C 0.054 3.946 28 C -0.132 4.132 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.417 0.583 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.349 0.651 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.278 0.722 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.040 0.960 47 H 0.111 0.889 48 H 0.048 0.952 49 H 0.088 0.912 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 -4.083 -21.141 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.013 3.987 4 H 0.136 0.864 5 C -0.225 4.225 6 C 0.295 3.705 7 O -0.454 6.454 8 N -0.354 5.354 9 C 0.011 3.989 10 C 0.017 3.983 11 N -0.294 5.294 12 C -0.077 4.077 13 C 0.242 3.758 14 O -0.489 6.489 15 N -0.235 5.235 16 C -0.453 4.453 17 H 0.078 0.922 18 C -0.210 4.210 19 N -0.573 5.573 20 Si 0.777 3.223 21 H -0.180 1.180 22 H -0.202 1.202 23 H -0.161 1.161 24 C -0.221 4.221 25 C -0.019 4.019 26 O -0.314 6.314 27 C -0.023 4.023 28 C -0.170 4.170 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.255 0.745 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.171 0.829 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.221 0.779 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.059 0.941 47 H 0.129 0.871 48 H 0.067 0.933 49 H 0.107 0.893 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.252 -4.494 -21.070 23.446 hybrid contribution 1.205 -0.085 0.916 1.516 sum -8.047 -4.580 -20.153 22.178 Atomic orbital electron populations 1.23092 0.78697 1.04181 1.01428 1.88002 1.21941 1.26333 1.95128 1.21998 0.92793 0.86982 0.96971 0.86403 1.22216 1.03875 1.01935 0.94501 1.20860 0.86884 0.83477 0.79267 1.90680 1.72835 1.31897 1.49992 1.45737 1.20378 1.11486 1.57832 1.21406 0.84388 0.95500 0.97618 1.21248 0.95291 0.93540 0.88184 1.60224 1.55398 1.05751 1.08031 1.21674 0.98211 0.98499 0.89278 1.20786 0.81837 0.85930 0.87282 1.90547 1.46098 1.27974 1.84243 1.42064 1.45874 1.26678 1.08864 1.18995 1.29813 1.10606 0.85841 0.92157 1.25987 0.98588 1.02170 0.94207 1.69785 1.42760 1.42398 1.02398 0.85481 0.79449 0.77925 0.79431 1.18022 1.20205 1.16138 1.22863 0.97057 0.98651 1.03514 1.22653 0.93904 0.90240 0.95062 1.87923 1.21757 1.74145 1.47587 1.22735 0.83503 0.96562 0.99498 1.22179 0.99431 0.95707 0.99718 0.92399 0.88553 0.92373 0.90163 0.89509 0.93457 0.74530 0.90223 0.92261 0.82881 0.87995 0.90481 0.77875 0.91223 0.89578 0.88892 0.87265 0.94124 0.87082 0.93327 0.89329 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.40 -9.85 9.88 -129.94 -1.28 -11.13 16 3 C 0.07 1.56 3.14 29.85 0.09 1.65 16 4 H 0.12 1.67 7.79 -2.39 -0.02 1.65 16 5 C -0.17 -3.55 9.42 71.98 0.68 -2.87 16 6 C 0.51 13.27 7.23 87.66 0.63 13.91 16 7 O -0.57 -20.03 16.50 16.00 0.26 -19.76 16 8 N -0.70 -14.70 5.01 -463.06 -2.32 -17.02 16 9 C 0.14 2.67 4.00 86.38 0.35 3.01 16 10 C 0.11 1.89 0.35 3.65 0.00 1.89 16 11 N -0.66 -15.51 4.98 -473.57 -2.36 -17.87 16 12 C 0.06 1.54 5.39 85.56 0.46 2.00 16 13 C 0.45 19.02 7.83 87.66 0.69 19.70 16 14 O -0.60 -30.69 15.84 -3.08 -0.05 -30.74 16 15 N -0.59 -26.98 5.09 -306.99 -1.56 -28.55 16 16 C -0.32 -18.40 10.16 84.04 0.85 -17.54 16 17 H 0.06 4.07 7.39 -2.91 -0.02 4.05 16 18 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 19 N -0.93 -55.47 13.96 21.66 0.30 -55.17 16 20 Si 0.96 38.84 27.74 68.60 1.90 40.74 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.24 -8.36 6.52 99.48 0.65 -7.72 16 24 C -0.18 -2.80 4.70 30.75 0.14 -2.66 16 25 C 0.06 1.01 6.58 72.08 0.47 1.48 16 26 O -0.40 -7.73 10.77 -148.98 -1.60 -9.34 16 27 C 0.05 0.88 6.58 72.01 0.47 1.35 16 28 C -0.13 -1.95 4.96 30.69 0.15 -1.79 16 29 H 0.06 0.68 8.09 -2.39 -0.02 0.66 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 0.70 7.87 -2.39 -0.02 0.69 16 32 H 0.08 1.67 7.57 -2.39 -0.02 1.65 16 33 H 0.09 1.50 7.87 -2.38 -0.02 1.48 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.42 7.96 6.86 -92.71 -0.64 7.33 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.31 6.61 -2.39 -0.02 1.29 16 38 H 0.35 9.01 5.24 -89.69 -0.47 8.54 16 39 H 0.10 2.69 6.23 -2.39 -0.01 2.68 16 40 H 0.08 1.76 6.45 -2.39 -0.02 1.75 16 41 H 0.39 14.94 5.76 -92.71 -0.53 14.40 16 42 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.09 1.28 6.37 -2.39 -0.02 1.26 16 44 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.04 0.80 6.87 -2.39 -0.02 0.78 16 47 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.05 0.91 6.76 -2.38 -0.02 0.89 16 49 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.09 1.23 7.40 -2.38 -0.02 1.21 16 Total: -1.00 -79.79 393.56 -0.73 -80.51 By element: Atomic # 1 Polarization: 47.46 SS G_CDS: -0.71 Total: 46.75 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 6.69 Total: 21.57 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -5.94 Total: -118.61 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -2.67 Total: -70.96 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.90 Total: 40.74 kcal Total: -79.79 -0.73 -80.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671925680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.923 kcal (2) G-P(sol) polarization free energy of solvation -79.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds