Wall clock time and date at job start Wed Apr 1 2020 02:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47228 * 2 1 4 4 O 1.42891 * 109.47423 * 179.97438 * 3 2 1 5 5 C 1.42899 * 114.00418 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47214 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00108 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99789 * 180.02562 * 6 5 4 9 9 C 1.46507 * 120.00188 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47231 * 179.97438 * 9 8 6 11 11 O 1.42898 * 110.27605 * 302.09059 * 10 9 8 12 12 C 1.54597 * 110.39088 * 64.23558 * 10 9 8 13 13 C 1.54939 * 102.91903 * 140.91581 * 12 10 9 14 14 N 1.48534 * 103.22788 * 322.58459 * 13 12 10 15 15 C 1.46903 * 110.99847 * 159.72507 * 14 13 12 16 16 C 1.50696 * 109.47177 * 52.60010 * 15 14 13 17 17 O 1.21292 * 120.00262 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99627 * 179.97438 * 16 15 14 19 19 C 1.37090 * 119.99714 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00232 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99992 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00236 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00316 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00267 * 23 21 19 26 26 H 1.48504 * 109.46913 * 150.00066 * 23 21 19 27 27 C 1.47900 * 105.81684 * 39.20914 * 14 13 12 28 28 H 1.09001 * 109.46784 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47385 * 299.99984 * 1 2 3 30 30 H 1.08998 * 109.46821 * 60.00319 * 1 2 3 31 31 H 1.09000 * 109.47616 * 239.99528 * 2 1 3 32 32 H 1.09006 * 109.46932 * 119.99947 * 2 1 3 33 33 H 1.08997 * 109.46925 * 59.99734 * 3 2 1 34 34 H 1.09006 * 109.47121 * 299.99832 * 3 2 1 35 35 H 1.09004 * 109.46928 * 59.99881 * 5 4 3 36 36 H 1.09000 * 109.47198 * 300.00403 * 5 4 3 37 37 H 0.97003 * 120.00027 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.46412 * 60.00095 * 9 8 6 39 39 H 1.08992 * 109.46964 * 300.00116 * 9 8 6 40 40 H 0.96702 * 113.99697 * 57.91153 * 11 10 9 41 41 H 1.08995 * 110.72560 * 259.26953 * 12 10 9 42 42 H 1.08999 * 110.72322 * 22.38189 * 12 10 9 43 43 H 1.09001 * 110.66367 * 204.14962 * 13 12 10 44 44 H 1.09002 * 110.66751 * 81.02211 * 13 12 10 45 45 H 1.09005 * 109.46883 * 292.60179 * 15 14 13 46 46 H 1.09002 * 109.46817 * 172.60629 * 15 14 13 47 47 H 0.96999 * 120.00048 * 0.02562 * 18 16 15 48 48 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.91507 * 94.02299 * 27 14 13 50 50 H 1.09008 * 109.91320 * 215.31374 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7479 0.0001 6 6 5.5525 2.6289 0.0001 7 8 6.0741 1.5340 0.0001 8 7 6.3164 3.7392 0.0002 9 6 7.7769 3.6236 0.0008 10 6 8.3992 5.0213 0.0001 11 8 7.9505 5.7626 -1.1361 12 6 8.0423 5.7705 1.3046 13 6 9.3548 6.5212 1.6430 14 7 10.4109 5.5530 1.2514 15 6 11.6967 6.2321 1.0433 16 6 12.0282 7.0628 2.2561 17 8 11.2683 7.0865 3.2012 18 7 13.1696 7.7788 2.2910 19 6 13.4714 8.5341 3.3946 20 1 12.7948 8.5552 4.2361 21 6 14.6479 9.2727 3.4304 22 7 14.9370 9.9971 4.4880 23 14 15.8186 9.2357 1.9752 24 1 16.7973 8.1334 2.1551 25 1 15.0478 9.0142 0.7254 26 1 16.5412 10.5301 1.8883 27 6 9.9359 4.9223 0.0008 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8935 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.7282 3.2894 0.8896 36 1 3.7289 3.2884 -0.8903 37 1 5.8993 4.6150 -0.0002 38 1 8.0988 3.0825 -0.8889 39 1 8.0982 3.0829 0.8910 40 1 6.9896 5.8577 -1.1893 41 1 7.2281 6.4748 1.1345 42 1 7.7827 5.0664 2.0950 43 1 9.4091 6.7393 2.7096 44 1 9.4361 7.4370 1.0574 45 1 11.6289 6.8781 0.1679 46 1 12.4788 5.4892 0.8868 47 1 13.7775 7.7596 1.5354 48 1 15.7584 10.5124 4.5131 49 1 10.3426 5.4527 -0.8602 50 1 10.2406 3.8760 -0.0264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671982011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:47 Heat of formation + Delta-G solvation = -151.910133 kcal Electronic energy + Delta-G solvation = -29718.029424 eV Core-core repulsion = 25359.909364 eV Total energy + Delta-G solvation = -4358.120060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54795 -39.62070 -38.42947 -37.98033 -36.03031 -34.58895 -34.14746 -33.97360 -31.83165 -31.42680 -29.86369 -28.73167 -27.22317 -26.12052 -24.83249 -23.75885 -22.08634 -21.68617 -20.83668 -20.44494 -19.45313 -18.40151 -18.05023 -17.48073 -17.02513 -16.55929 -16.22872 -15.83361 -15.73743 -15.41370 -15.34963 -14.82766 -14.73251 -14.53515 -14.38413 -13.77792 -13.69776 -13.47130 -13.41125 -13.01854 -12.90374 -12.61743 -12.59218 -12.51337 -12.46767 -12.11198 -11.94946 -11.78551 -11.43074 -11.37148 -11.32477 -11.28161 -11.08642 -10.93859 -10.61449 -10.20190 -10.19211 -10.10776 -10.00116 -9.57695 -9.49386 -8.54640 -8.23273 -8.09120 -6.34038 -3.85568 2.24758 2.33052 3.01119 3.05785 3.13879 3.44985 3.64229 3.69722 4.07878 4.13230 4.21376 4.33433 4.42867 4.44382 4.52662 4.59017 4.63071 4.68156 4.80543 4.81155 4.95582 4.97925 5.18696 5.19209 5.22113 5.33612 5.45514 5.47238 5.51576 5.59891 5.62299 5.63530 5.66364 5.72790 5.78898 5.83324 5.89904 5.97066 6.13512 6.51945 6.55121 6.98954 7.03455 7.09495 7.29005 7.54793 7.82902 8.11315 8.56324 8.91803 9.38981 9.78726 10.78865 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.036204 B = 0.001567 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.219573 B =17861.144211 C =18156.035832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.045 3.955 6 C 0.514 3.486 7 O -0.514 6.514 8 N -0.729 5.729 9 C 0.104 3.896 10 C 0.111 3.889 11 O -0.549 6.549 12 C -0.152 4.152 13 C 0.040 3.960 14 N -0.492 5.492 15 C 0.033 3.967 16 C 0.451 3.549 17 O -0.563 6.563 18 N -0.587 5.587 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.043 3.957 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.276 1.276 27 C 0.048 3.952 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.397 0.603 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.370 0.630 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.041 0.959 45 H 0.052 0.948 46 H 0.093 0.907 47 H 0.371 0.629 48 H 0.274 0.726 49 H 0.062 0.938 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.694 -12.858 -14.250 31.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.035 4.035 6 C 0.299 3.701 7 O -0.388 6.388 8 N -0.384 5.384 9 C -0.020 4.020 10 C 0.070 3.930 11 O -0.355 6.355 12 C -0.190 4.190 13 C -0.087 4.087 14 N -0.216 5.216 15 C -0.099 4.099 16 C 0.237 3.763 17 O -0.446 6.446 18 N -0.226 5.226 19 C -0.435 4.435 20 H 0.138 0.862 21 C -0.160 4.160 22 N -0.520 5.520 23 Si 0.705 3.295 24 H -0.195 1.195 25 H -0.195 1.195 26 H -0.202 1.202 27 C -0.081 4.081 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.231 0.769 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.218 0.782 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.139 0.861 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.204 0.796 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.809 -14.038 -13.200 30.630 hybrid contribution 0.091 1.477 -1.676 2.236 sum -23.719 -12.562 -14.876 30.686 Atomic orbital electron populations 1.21698 0.94581 1.02415 1.02008 1.21456 0.95663 0.95313 1.03756 1.22656 0.80268 0.98452 1.00319 1.88012 1.19744 1.25055 1.95443 1.22173 0.91428 0.87192 1.02706 1.20228 0.88652 0.84493 0.76705 1.90763 1.74558 1.26363 1.47066 1.45798 1.07186 1.08646 1.76811 1.22110 0.78603 0.97346 1.03895 1.22345 0.95431 0.89095 0.86161 1.86656 1.26697 1.75983 1.46144 1.23308 0.99107 0.99802 0.96806 1.23459 0.87644 0.92694 1.04863 1.64730 1.01937 1.28914 1.26067 1.22161 0.93269 0.97460 0.97020 1.19573 0.83517 0.83981 0.89225 1.90474 1.49266 1.66956 1.37909 1.42188 1.19576 1.43035 1.17828 1.19429 1.06408 1.21789 0.95829 0.86221 1.25036 0.97272 0.96523 0.97198 1.69621 1.25397 1.28898 1.28059 0.86681 0.81722 0.78847 0.82205 1.19521 1.19518 1.20151 1.22842 0.90548 1.01576 0.93113 0.91882 0.92473 0.92519 0.90949 0.90885 0.93039 0.93107 0.90081 0.90210 0.76901 0.90415 0.89501 0.78249 0.90743 0.89712 0.86058 0.94091 0.92961 0.88860 0.79631 0.91573 0.91945 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.74 6.30 -26.73 -0.17 -0.91 16 3 C 0.06 0.37 5.94 37.16 0.22 0.59 16 4 O -0.36 -3.52 9.87 -55.14 -0.54 -4.06 16 5 C 0.05 0.30 6.42 36.01 0.23 0.54 16 6 C 0.51 5.10 7.91 -10.99 -0.09 5.01 16 7 O -0.51 -7.74 16.50 -14.35 -0.24 -7.97 16 8 N -0.73 -5.38 5.14 -60.29 -0.31 -5.69 16 9 C 0.10 0.99 4.49 -4.04 -0.02 0.97 16 10 C 0.11 1.12 1.06 -89.27 -0.09 1.03 16 11 O -0.55 -5.21 12.94 -35.23 -0.46 -5.66 16 12 C -0.15 -1.66 5.91 -24.87 -0.15 -1.80 16 13 C 0.04 0.63 5.30 -1.90 -0.01 0.62 16 14 N -0.49 -7.73 5.26 -231.89 -1.22 -8.95 16 15 C 0.03 0.55 5.52 -4.98 -0.03 0.52 16 16 C 0.45 10.05 7.49 -10.98 -0.08 9.97 16 17 O -0.56 -14.44 13.10 5.55 0.07 -14.37 16 18 N -0.59 -13.83 5.09 -10.96 -0.06 -13.88 16 19 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 21 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 22 N -0.88 -25.48 13.96 55.50 0.77 -24.70 16 23 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.05 0.59 6.18 -2.76 -0.02 0.57 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.40 1.62 7.22 -40.82 -0.29 1.33 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 40 H 0.37 1.98 7.78 45.56 0.35 2.33 16 41 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 43 H 0.12 2.31 5.97 -51.93 -0.31 2.00 16 44 H 0.04 0.67 8.02 -51.93 -0.42 0.25 16 45 H 0.05 0.80 7.81 -51.93 -0.41 0.39 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.06 0.78 7.39 -51.93 -0.38 0.39 16 50 H 0.09 1.02 7.68 -51.92 -0.40 0.62 16 LS Contribution 405.35 15.07 6.11 6.11 Total: -1.00 -36.54 405.35 -8.21 -44.74 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -7.54 Total: 10.68 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -0.08 Total: 9.24 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.81 Total: -53.23 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.16 Total: -32.06 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.54 -8.21 -44.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671982011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.167 kcal (2) G-P(sol) polarization free energy of solvation -36.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds