Wall clock time and date at job start Wed Apr 1 2020 02:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 O 1.42905 * 109.46953 * 180.02562 * 3 2 1 5 5 C 1.42900 * 113.99783 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47127 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99912 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00200 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00092 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46846 * 180.02562 * 9 8 6 11 11 O 1.42900 * 110.62936 * 61.89414 * 10 9 8 12 12 C 1.55139 * 110.85867 * 298.68364 * 10 9 8 13 13 C 1.54904 * 101.65629 * 205.89559 * 12 10 9 14 14 N 1.47843 * 104.79405 * 37.06983 * 13 12 10 15 15 C 1.46900 * 110.99888 * 213.63369 * 14 13 12 16 16 C 1.50691 * 109.47193 * 290.84246 * 15 14 13 17 17 O 1.21291 * 120.00247 * 0.02562 * 16 15 14 18 18 N 1.34785 * 119.99768 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99773 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00182 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99652 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00438 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47127 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46945 * 119.99876 * 23 21 19 26 26 H 1.48505 * 109.47314 * 239.99999 * 23 21 19 27 27 C 1.47446 * 108.56761 * 335.90448 * 14 13 12 28 28 H 1.09001 * 109.46549 * 300.00015 * 1 2 3 29 29 H 1.08994 * 109.46992 * 59.99676 * 1 2 3 30 30 H 1.08998 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47011 * 239.99824 * 2 1 3 32 32 H 1.08999 * 109.47427 * 120.00437 * 2 1 3 33 33 H 1.08995 * 109.46740 * 60.00491 * 3 2 1 34 34 H 1.08998 * 109.47018 * 299.99788 * 3 2 1 35 35 H 1.09006 * 109.46920 * 59.99967 * 5 4 3 36 36 H 1.08994 * 109.47439 * 300.00346 * 5 4 3 37 37 H 0.97006 * 119.99648 * 0.02562 * 8 6 5 38 38 H 1.08996 * 109.47267 * 60.00620 * 9 8 6 39 39 H 1.08998 * 109.47101 * 299.99605 * 9 8 6 40 40 H 0.96703 * 114.00249 * 303.10466 * 11 10 9 41 41 H 1.09005 * 110.98834 * 323.99103 * 12 10 9 42 42 H 1.09000 * 110.99151 * 87.76541 * 12 10 9 43 43 H 1.08998 * 110.37178 * 278.24131 * 13 12 10 44 44 H 1.09003 * 110.37142 * 155.89745 * 13 12 10 45 45 H 1.08998 * 109.47082 * 50.84605 * 15 14 13 46 46 H 1.09000 * 109.46598 * 170.84099 * 15 14 13 47 47 H 0.96996 * 119.99808 * 0.02562 * 18 16 15 48 48 H 0.97002 * 120.00786 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.88511 * 120.39826 * 27 14 13 50 50 H 1.08995 * 109.88851 * 241.42128 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 6 5.5526 2.6289 -0.0012 7 8 6.0742 1.5339 -0.0012 8 7 6.3165 3.7392 -0.0012 9 6 7.7770 3.6235 -0.0018 10 6 8.3993 5.0213 -0.0010 11 8 8.0288 5.7367 1.1792 12 6 7.9879 5.8098 -1.2722 13 6 9.1677 6.8026 -1.4201 14 7 10.3625 6.0321 -1.0146 15 6 11.3447 6.8967 -0.3469 16 6 11.9392 7.8502 -1.3510 17 8 11.5797 7.8136 -2.5088 18 7 12.8697 8.7445 -0.9622 19 6 13.4101 9.6124 -1.8756 20 1 13.0906 9.5793 -2.9067 21 6 14.3697 10.5339 -1.4748 22 7 14.7589 10.5740 -0.2204 23 14 15.1067 11.7160 -2.7195 24 1 14.5039 11.4689 -4.0540 25 1 14.8265 13.1131 -2.3013 26 1 16.5750 11.5061 -2.7925 27 6 9.9348 4.9349 -0.1273 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7290 3.2891 0.8888 36 1 3.7283 3.2886 -0.8911 37 1 5.8993 4.6150 -0.0009 38 1 8.0983 3.0829 -0.8920 39 1 8.0989 3.0825 0.8880 40 1 7.0736 5.8193 1.3057 41 1 7.9223 5.1495 -2.1370 42 1 7.0482 6.3396 -1.1159 43 1 9.0272 7.6596 -0.7615 44 1 9.2606 7.1298 -2.4557 45 1 10.8525 7.4623 0.4442 46 1 12.1357 6.2827 0.0837 47 1 13.1569 8.7740 -0.0362 48 1 15.4291 11.2170 0.0594 49 1 10.2179 3.9758 -0.5608 50 1 10.3970 5.0493 0.8531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671982012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:51 Heat of formation + Delta-G solvation = -161.849514 kcal Electronic energy + Delta-G solvation = -29598.708003 eV Core-core repulsion = 25240.156939 eV Total energy + Delta-G solvation = -4358.551064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.54036 -39.58492 -38.26444 -37.88532 -35.92200 -34.62625 -34.16454 -33.84031 -31.58247 -31.09073 -29.90042 -28.76876 -27.10133 -26.10293 -24.84720 -23.90863 -22.10450 -21.62626 -20.82564 -20.50289 -19.20021 -18.13236 -17.84455 -17.49750 -17.04829 -16.64531 -16.16392 -15.83291 -15.75209 -15.42659 -15.14507 -14.79939 -14.57890 -14.43429 -14.29691 -13.93328 -13.75702 -13.58869 -13.32385 -12.92821 -12.76450 -12.63775 -12.59546 -12.48648 -12.36412 -12.02093 -11.61349 -11.48458 -11.45429 -11.43843 -11.38696 -11.20087 -11.07377 -10.82006 -10.33187 -10.21351 -10.20743 -10.19293 -10.14521 -9.52898 -9.47984 -8.44653 -7.95693 -7.89034 -6.39133 -3.79821 2.21784 2.30418 3.17690 3.27989 3.35130 3.42881 3.76073 3.93796 3.99556 4.17761 4.25529 4.31888 4.40840 4.42754 4.50791 4.60669 4.64627 4.67389 4.79230 4.94043 4.96345 5.09509 5.16799 5.20600 5.26609 5.30973 5.43350 5.45785 5.50206 5.59317 5.61950 5.62782 5.71214 5.82731 5.87257 5.91612 5.94178 6.09419 6.31689 6.39835 6.52893 6.98575 7.18222 7.21996 7.29621 7.57604 7.79874 8.09187 8.64980 9.21043 9.57833 10.09821 10.78823 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.041993 B = 0.001486 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.623145 B =18841.946860 C =19039.228873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.045 3.955 6 C 0.514 3.486 7 O -0.514 6.514 8 N -0.729 5.729 9 C 0.105 3.895 10 C 0.098 3.902 11 O -0.544 6.544 12 C -0.154 4.154 13 C 0.058 3.942 14 N -0.501 5.501 15 C 0.040 3.960 16 C 0.445 3.555 17 O -0.578 6.578 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.057 3.943 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.398 0.602 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.370 0.630 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.094 0.906 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.183 -14.694 5.093 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.035 4.035 6 C 0.299 3.701 7 O -0.388 6.388 8 N -0.385 5.385 9 C -0.019 4.019 10 C 0.055 3.945 11 O -0.349 6.349 12 C -0.193 4.193 13 C -0.069 4.069 14 N -0.224 5.224 15 C -0.091 4.091 16 C 0.231 3.769 17 O -0.462 6.462 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.072 4.072 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.232 0.768 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.217 0.783 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.114 0.886 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.112 0.888 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.874 -15.749 4.021 29.714 hybrid contribution -0.697 1.757 0.767 2.040 sum -25.571 -13.992 4.788 29.539 Atomic orbital electron populations 1.21698 0.94572 1.02422 1.02016 1.21456 0.95671 0.95300 1.03752 1.22660 0.80246 0.98463 1.00330 1.88014 1.19761 1.25042 1.95447 1.22170 0.91417 0.87201 1.02716 1.20238 0.88666 0.84495 0.76689 1.90764 1.74564 1.26366 1.47079 1.45812 1.07142 1.08694 1.76809 1.22011 0.78689 0.97302 1.03918 1.22814 0.96899 0.89272 0.85467 1.86677 1.27759 1.77340 1.43172 1.23432 0.99071 0.99078 0.97702 1.22969 0.86671 0.94352 1.02913 1.63371 1.11583 1.10384 1.37088 1.22128 0.96011 0.95536 0.95456 1.19735 0.83850 0.84076 0.89277 1.90500 1.63742 1.72753 1.19222 1.41866 1.35709 1.30821 1.11910 1.19744 1.18775 1.10963 0.93217 0.87902 1.25244 0.97301 0.98603 0.96808 1.69618 1.31960 1.37294 1.15527 0.85819 0.78634 0.79542 0.80449 1.19239 1.20829 1.20764 1.22853 0.89776 0.97281 0.97246 0.92507 0.92478 0.91875 0.90904 0.90933 0.93078 0.93050 0.90181 0.90110 0.76817 0.89716 0.90218 0.78297 0.89525 0.90782 0.93562 0.88647 0.92970 0.89374 0.77518 0.91972 0.88796 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.91 37.16 0.37 -0.21 16 2 C -0.12 -0.72 6.30 -26.73 -0.17 -0.88 16 3 C 0.06 0.36 5.94 37.16 0.22 0.58 16 4 O -0.36 -3.43 9.88 -55.14 -0.54 -3.98 16 5 C 0.05 0.29 6.42 36.00 0.23 0.52 16 6 C 0.51 4.92 7.91 -10.99 -0.09 4.83 16 7 O -0.51 -7.54 16.50 -14.36 -0.24 -7.77 16 8 N -0.73 -5.12 5.13 -60.29 -0.31 -5.43 16 9 C 0.10 0.94 4.76 -4.04 -0.02 0.93 16 10 C 0.10 0.97 0.92 -88.80 -0.08 0.88 16 11 O -0.54 -5.36 13.10 -35.23 -0.46 -5.82 16 12 C -0.15 -1.59 5.71 -24.60 -0.14 -1.73 16 13 C 0.06 0.89 5.74 -2.30 -0.01 0.88 16 14 N -0.50 -8.24 4.86 -232.70 -1.13 -9.37 16 15 C 0.04 0.73 5.05 -4.98 -0.03 0.71 16 16 C 0.45 10.60 7.58 -10.99 -0.08 10.51 16 17 O -0.58 -15.61 14.61 5.55 0.08 -15.53 16 18 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 23 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.06 0.72 6.22 -2.84 -0.02 0.70 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.40 1.54 7.29 -40.82 -0.30 1.24 16 38 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.37 2.11 8.06 45.56 0.37 2.48 16 41 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 42 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 43 H 0.05 0.74 7.62 -51.93 -0.40 0.35 16 44 H 0.10 1.71 7.38 -51.93 -0.38 1.32 16 45 H 0.05 0.90 7.85 -51.93 -0.41 0.49 16 46 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.09 1.08 7.79 -51.93 -0.40 0.68 16 50 H 0.07 0.90 7.48 -51.93 -0.39 0.51 16 LS Contribution 411.39 15.07 6.20 6.20 Total: -1.00 -36.45 411.39 -8.46 -44.91 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.64 Total: 9.47 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -0.06 Total: 9.73 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.77 Total: -53.31 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.16 Total: -33.10 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.45 -8.46 -44.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671982012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.942 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds