Wall clock time and date at job start Wed Apr 1 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99799 * 2 1 4 4 C 1.53001 * 109.47214 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47355 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99508 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00317 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00299 * 174.74900 * 7 5 4 9 9 C 1.53003 * 109.50387 * 302.96103 * 8 7 5 10 10 O 1.42904 * 109.46439 * 305.44878 * 9 8 7 11 11 C 1.53121 * 109.50517 * 182.87970 * 8 7 5 12 12 C 1.53201 * 109.11489 * 297.67625 * 11 8 7 13 13 C 1.53031 * 109.29887 * 302.36582 * 12 11 8 14 14 N 1.46847 * 109.52330 * 59.18427 * 13 12 11 15 15 C 1.46897 * 111.00062 * 174.15825 * 14 13 12 16 16 C 1.50698 * 109.47251 * 294.20843 * 15 14 13 17 17 O 1.21293 * 119.99992 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99744 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99803 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00001 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00311 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00445 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99848 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46963 * 90.00261 * 23 21 19 25 25 H 1.48494 * 109.47046 * 210.00091 * 23 21 19 26 26 H 1.48496 * 109.46750 * 330.00091 * 23 21 19 27 27 C 1.46847 * 111.19470 * 298.25826 * 14 13 12 28 28 H 1.08997 * 109.47335 * 60.00210 * 1 2 3 29 29 H 1.09004 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47460 * 300.00288 * 1 2 3 31 31 H 1.09006 * 109.47227 * 299.99577 * 3 2 1 32 32 H 1.09003 * 109.47617 * 59.99472 * 3 2 1 33 33 H 1.09003 * 109.46778 * 299.99370 * 4 3 2 34 34 H 1.09000 * 109.47122 * 59.99909 * 4 3 2 35 35 H 0.97003 * 119.99674 * 354.74371 * 7 5 4 36 36 H 1.08994 * 109.47210 * 65.44346 * 9 8 7 37 37 H 1.08995 * 109.47175 * 185.45234 * 9 8 7 38 38 H 0.96703 * 113.99304 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.52109 * 57.61641 * 11 8 7 40 40 H 1.08997 * 109.52117 * 177.80786 * 11 8 7 41 41 H 1.09008 * 109.49011 * 182.42111 * 12 11 8 42 42 H 1.09003 * 109.52923 * 62.33701 * 12 11 8 43 43 H 1.09001 * 109.46533 * 299.16520 * 13 12 11 44 44 H 1.09006 * 109.46307 * 179.19678 * 13 12 11 45 45 H 1.09005 * 109.47110 * 54.21155 * 15 14 13 46 46 H 1.09004 * 109.47112 * 174.20904 * 15 14 13 47 47 H 0.96995 * 120.00607 * 359.97438 * 18 16 15 48 48 H 0.96994 * 120.00072 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.46225 * 301.72308 * 27 14 13 50 50 H 1.09000 * 109.45281 * 181.75618 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 8 3.4353 3.5426 -0.0017 7 7 5.4886 2.7024 -0.0024 8 6 6.0849 4.0354 -0.1192 9 6 5.5867 4.7075 -1.4002 10 8 5.8505 3.8569 -2.5178 11 6 7.6103 3.9107 -0.1672 12 6 8.1046 3.2920 1.1442 13 6 7.6455 4.1603 2.3178 14 7 6.1796 4.2479 2.3194 15 6 5.6960 4.9584 3.5107 16 6 6.0135 4.1492 4.7416 17 8 6.5868 3.0854 4.6369 18 7 5.6614 4.6080 5.9590 19 6 5.9498 3.8716 7.0789 20 1 6.4595 2.9239 6.9856 21 6 5.5864 4.3442 8.3339 22 7 5.8632 3.6386 9.4074 23 14 4.7054 5.9836 8.4954 24 1 3.2381 5.7659 8.4266 25 1 5.0528 6.6060 9.7981 26 1 5.1250 6.8819 7.3900 27 6 5.6843 4.8821 1.0910 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 -0.8901 32 1 1.6885 1.8465 0.8899 33 1 3.8573 0.6437 0.8892 34 1 3.8567 0.6440 -0.8908 35 1 6.0585 1.9212 0.0741 36 1 4.5140 4.8849 -1.3239 37 1 6.1034 5.6574 -1.5367 38 1 5.5606 4.2204 -3.3657 39 1 7.8975 3.2727 -1.0031 40 1 8.0527 4.8989 -0.2932 41 1 9.1934 3.2400 1.1342 42 1 7.6934 2.2882 1.2514 43 1 8.0689 5.1597 2.2177 44 1 7.9837 3.7147 3.2534 45 1 6.1858 5.9299 3.5781 46 1 4.6177 5.0995 3.4368 47 1 5.2040 5.4592 6.0429 48 1 5.6092 3.9684 10.2835 49 1 6.1169 5.8781 0.9967 50 1 4.5981 4.9607 1.1357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672472491.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:27 Heat of formation + Delta-G solvation = -152.777011 kcal Electronic energy + Delta-G solvation = -31926.387886 eV Core-core repulsion = 27568.230235 eV Total energy + Delta-G solvation = -4358.157651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70706 -38.91910 -38.14891 -37.52405 -36.61474 -34.53179 -33.79291 -32.54134 -32.03367 -31.61376 -30.30663 -27.73160 -26.73313 -25.88260 -24.58428 -23.92885 -22.84814 -21.61263 -20.51572 -19.32522 -19.18402 -18.24621 -17.58928 -17.45039 -16.39641 -16.19497 -16.08811 -15.64299 -15.46626 -15.09665 -14.97844 -14.89804 -14.79261 -14.31271 -14.20666 -13.70918 -13.49677 -13.41003 -13.24929 -13.08970 -12.86797 -12.59237 -12.40824 -12.26193 -12.00940 -11.95150 -11.75267 -11.53983 -11.49099 -11.29341 -11.13632 -10.86158 -10.58526 -10.51955 -10.43977 -10.29599 -9.96324 -9.80278 -9.51381 -9.46090 -8.94384 -8.49826 -8.16021 -7.90225 -6.29733 -3.80852 2.74431 2.97899 3.03726 3.08483 3.16149 3.66973 3.76501 3.85705 4.11586 4.27023 4.51590 4.70130 4.77228 4.80121 4.93387 4.96528 5.03453 5.17810 5.18680 5.22597 5.23547 5.30232 5.38786 5.41067 5.47240 5.49386 5.52784 5.60851 5.66111 5.70237 5.70962 5.77306 5.79066 5.86224 5.93697 5.97979 6.08715 6.33313 6.47632 6.56691 6.98867 7.21217 7.34982 7.42607 7.60530 7.61326 8.16220 8.30988 8.62111 8.96890 9.44376 9.85583 10.83433 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.003320 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.302934 B = 8431.462186 C =10423.059911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.079 3.921 4 C -0.141 4.141 5 C 0.533 3.467 6 O -0.553 6.553 7 N -0.691 5.691 8 C 0.193 3.807 9 C 0.064 3.936 10 O -0.565 6.565 11 C -0.121 4.121 12 C -0.114 4.114 13 C 0.048 3.952 14 N -0.505 5.505 15 C 0.045 3.955 16 C 0.455 3.545 17 O -0.558 6.558 18 N -0.592 5.592 19 C -0.303 4.303 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.043 3.957 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.402 0.598 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.376 0.624 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.021 0.979 44 H 0.105 0.895 45 H 0.047 0.953 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.035 0.965 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 2.040 -24.308 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.315 6.315 3 C 0.002 3.998 4 C -0.181 4.181 5 C 0.320 3.680 6 O -0.432 6.432 7 N -0.342 5.342 8 C 0.106 3.894 9 C -0.015 4.015 10 O -0.370 6.370 11 C -0.159 4.159 12 C -0.152 4.152 13 C -0.080 4.080 14 N -0.229 5.229 15 C -0.087 4.087 16 C 0.241 3.759 17 O -0.440 6.440 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.522 5.522 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.086 4.086 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.222 0.778 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.040 0.960 44 H 0.123 0.877 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.053 0.947 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.318 0.964 -23.653 23.904 hybrid contribution -0.569 2.481 0.012 2.545 sum -3.887 3.445 -23.641 24.205 Atomic orbital electron populations 1.22715 0.80784 1.02623 1.00119 1.87804 1.19912 1.28205 1.95550 1.22137 0.92038 0.84041 1.01558 1.21456 0.95333 0.95669 1.05628 1.20127 0.82220 0.90750 0.74872 1.90595 1.61281 1.40563 1.50777 1.45561 1.06215 1.08678 1.73709 1.20263 0.93340 0.83476 0.92340 1.22568 1.01057 0.92064 0.85819 1.86444 1.85482 1.47746 1.17328 1.21874 0.92813 1.02246 0.98958 1.21588 1.00203 1.00243 0.93162 1.22330 0.86847 0.97688 1.01115 1.61356 1.10243 1.51591 0.99747 1.21857 1.01130 0.95123 0.90548 1.19620 0.84767 0.88012 0.83537 1.90514 1.44547 1.23283 1.85671 1.42218 1.53988 1.20661 1.06279 1.19417 1.36319 1.05041 0.82400 0.86279 1.25026 0.97854 0.98116 0.95144 1.69619 1.46410 1.38022 0.98190 0.86684 0.80627 0.83714 0.78441 1.19606 1.20222 1.19562 1.22472 1.02509 0.94277 0.89340 0.94171 0.89650 0.93873 0.92731 0.92261 0.87795 0.88340 0.76253 0.91204 0.93318 0.77779 0.90488 0.90994 0.91291 0.90894 0.96045 0.87664 0.93508 0.89306 0.79763 0.91652 0.94711 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.40 -4.75 10.70 -35.23 -0.38 -5.12 16 3 C 0.08 0.93 5.23 37.16 0.19 1.13 16 4 C -0.14 -1.57 6.07 -27.88 -0.17 -1.74 16 5 C 0.53 6.90 7.24 -10.99 -0.08 6.82 16 6 O -0.55 -8.38 12.28 5.55 0.07 -8.31 16 7 N -0.69 -8.15 4.47 -47.54 -0.21 -8.36 16 8 C 0.19 2.20 0.45 -131.74 -0.06 2.14 16 9 C 0.06 0.65 5.58 37.16 0.21 0.85 16 10 O -0.57 -5.25 13.02 -35.23 -0.46 -5.71 16 11 C -0.12 -1.25 4.73 -26.56 -0.13 -1.37 16 12 C -0.11 -1.37 5.91 -26.61 -0.16 -1.53 16 13 C 0.05 0.73 5.11 -3.84 -0.02 0.71 16 14 N -0.51 -8.07 4.25 -236.12 -1.00 -9.07 16 15 C 0.04 0.78 5.45 -4.98 -0.03 0.75 16 16 C 0.45 10.34 7.46 -10.99 -0.08 10.26 16 17 O -0.56 -14.59 13.90 5.55 0.08 -14.51 16 18 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 19 C -0.30 -8.58 10.16 -14.93 -0.15 -8.74 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 23 Si 0.88 19.58 27.74 -169.99 -4.71 14.87 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 27 C 0.04 0.58 4.05 -3.84 -0.02 0.56 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 4.29 7.39 -40.82 -0.30 3.99 16 36 H 0.07 0.81 6.31 -51.93 -0.33 0.48 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.38 1.97 9.12 45.56 0.42 2.38 16 39 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 42 H 0.07 0.93 7.00 -51.93 -0.36 0.57 16 43 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.11 2.00 5.78 -51.93 -0.30 1.70 16 45 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 46 H 0.09 1.44 7.99 -51.93 -0.41 1.03 16 47 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.10 1.46 6.08 -51.93 -0.32 1.14 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -34.69 394.86 -6.72 -41.41 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -7.30 Total: 15.93 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 0.53 Total: 12.31 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.50 Total: -56.80 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.69 Total: -33.66 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.69 -6.72 -41.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672472491.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.368 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds