Wall clock time and date at job start Wed Apr 1 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47147 * 2 1 4 4 C 1.34637 * 116.99932 * 179.97438 * 3 2 1 5 5 O 1.21514 * 120.00224 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99928 * 180.02562 * 4 3 2 7 7 C 1.47022 * 125.64475 * 0.02562 * 6 4 3 8 8 C 1.54331 * 107.26896 * 181.02677 * 7 6 4 9 9 H 1.09005 * 110.71945 * 263.65599 * 8 7 6 10 10 N 1.46493 * 110.72106 * 140.55826 * 8 7 6 11 11 C 1.34774 * 120.00265 * 86.45345 * 10 8 7 12 12 O 1.21587 * 119.99871 * 0.02562 * 11 10 8 13 13 N 1.34773 * 120.00397 * 180.02562 * 11 10 8 14 14 C 1.46498 * 120.00406 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47536 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47321 * 180.02562 * 15 14 13 17 17 C 1.50708 * 109.46985 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99832 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99468 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00612 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99598 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47143 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47221 * 119.99929 * 21 19 17 24 24 H 1.48496 * 109.47361 * 240.00205 * 21 19 17 25 25 C 1.55164 * 102.94071 * 22.19424 * 8 7 6 26 26 H 1.08996 * 111.00023 * 82.57458 * 25 8 7 27 27 C 1.52999 * 111.00044 * 206.38632 * 25 8 7 28 28 O 1.42903 * 109.46898 * 185.00057 * 27 25 8 29 29 C 1.47421 * 125.64663 * 179.71923 * 6 4 3 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00119 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00100 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99701 * 2 1 3 34 34 H 1.08996 * 109.47853 * 240.00044 * 2 1 3 35 35 H 1.09001 * 109.88687 * 300.44177 * 7 6 4 36 36 H 1.08995 * 109.88169 * 61.46184 * 7 6 4 37 37 H 0.97003 * 119.99975 * 266.45975 * 10 8 7 38 38 H 0.97005 * 120.00206 * 359.97438 * 13 11 10 39 39 H 1.09001 * 109.46757 * 299.99850 * 14 13 11 40 40 H 1.08999 * 109.47134 * 59.99399 * 14 13 11 41 41 H 1.09009 * 109.46843 * 300.00070 * 15 14 13 42 42 H 1.08999 * 109.47388 * 59.99569 * 15 14 13 43 43 H 1.09002 * 109.46839 * 299.99205 * 16 15 14 44 44 H 1.08999 * 109.47304 * 59.99441 * 16 15 14 45 45 H 0.97000 * 120.00334 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.47148 * 305.00068 * 27 25 8 47 47 H 1.09000 * 109.47384 * 65.00602 * 27 25 8 48 48 H 0.96697 * 114.00462 * 180.02562 * 28 27 25 49 49 H 1.09001 * 110.36366 * 274.73943 * 29 6 4 50 50 H 1.08998 * 110.37289 * 37.06257 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0890 0.5818 0.0015 6 7 3.8639 2.7909 0.0011 7 6 3.0874 4.0392 0.0017 8 6 4.0965 5.2066 -0.0242 9 1 4.2790 5.5811 0.9831 10 7 3.6218 6.2829 -0.8972 11 6 2.7980 7.2319 -0.4102 12 8 2.4492 7.1949 0.7540 13 7 2.3608 8.2218 -1.2135 14 6 1.4658 9.2536 -0.6839 15 6 1.1232 10.2500 -1.7932 16 6 0.1890 11.3280 -1.2399 17 6 -0.1479 12.3098 -2.3325 18 1 0.2636 12.1783 -3.3224 19 6 -0.9814 13.3759 -2.0683 20 7 -1.4820 13.5363 -0.8629 21 14 -1.3984 14.5932 -3.4224 22 1 -0.7126 14.1922 -4.6770 23 1 -2.8669 14.6041 -3.6433 24 1 -0.9478 15.9508 -3.0236 25 6 5.3742 4.5484 -0.6091 26 1 5.3299 4.5088 -1.6975 27 6 6.6324 5.2821 -0.1407 28 8 7.7778 4.7243 -0.7881 29 6 5.2993 3.1269 0.0076 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 2.4505 4.0802 -0.8819 36 1 2.4758 4.0949 0.9022 37 1 3.9003 6.3125 -1.8260 38 1 2.6393 8.2515 -2.1422 39 1 0.5507 8.7879 -0.3180 40 1 1.9593 9.7774 0.1348 41 1 2.0386 10.7157 -2.1587 42 1 0.6299 9.7266 -2.6122 43 1 -0.7263 10.8626 -0.8743 44 1 0.6828 11.8513 -0.4211 45 1 -2.0680 14.2865 -0.6769 46 1 6.5516 6.3394 -0.3927 47 1 6.7362 5.1727 0.9388 48 1 8.6134 5.1417 -0.5378 49 1 5.6829 3.1327 1.0279 50 1 5.8576 2.4185 -0.6044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678483958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:41 Heat of formation + Delta-G solvation = -197.867238 kcal Electronic energy + Delta-G solvation = -29781.004496 eV Core-core repulsion = 25420.891586 eV Total energy + Delta-G solvation = -4360.112910 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.91746 -41.12097 -39.75233 -37.73802 -37.31890 -36.90134 -35.39362 -35.14272 -33.29659 -32.74257 -32.06606 -29.82695 -28.27579 -27.14950 -25.22213 -24.31889 -23.64451 -22.26702 -22.03045 -21.93194 -21.39232 -19.40447 -19.20831 -18.54601 -18.25600 -18.09839 -17.98821 -17.36220 -16.81706 -16.58352 -16.39415 -15.92793 -15.69355 -15.44247 -15.30554 -15.09140 -14.79461 -14.45794 -14.37919 -14.22084 -14.01373 -13.69999 -13.59582 -13.52519 -13.16456 -12.98787 -12.89521 -12.76064 -12.57969 -12.51706 -12.44630 -12.31027 -11.91196 -11.84526 -11.63820 -11.62640 -11.58645 -11.28328 -11.11567 -10.87811 -10.54135 -10.45033 -9.99428 -9.83662 -8.17829 -6.28789 0.89474 1.42843 1.43210 1.54393 1.56074 1.63691 2.12030 2.43151 2.70701 3.00826 3.16160 3.25144 3.34189 3.60544 3.91942 3.98482 4.04837 4.07716 4.11578 4.21324 4.28692 4.30249 4.32765 4.50040 4.58270 4.61074 4.61699 4.65083 4.71573 4.74745 4.88515 4.93205 5.00816 5.02319 5.07729 5.09238 5.21176 5.32151 5.42145 5.49992 5.57841 5.75105 5.87417 5.98937 6.16289 6.25188 6.89169 6.92483 7.03187 7.10112 7.40729 7.57797 8.94355 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.001864 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.709854 B =15016.895123 C =16826.419668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 O -0.374 6.374 4 C 0.661 3.339 5 O -0.602 6.602 6 N -0.600 5.600 7 C 0.097 3.903 8 C 0.171 3.829 9 H 0.105 0.895 10 N -0.720 5.720 11 C 0.702 3.298 12 O -0.632 6.632 13 N -0.728 5.728 14 C 0.150 3.850 15 C -0.101 4.101 16 C 0.022 3.978 17 C -0.538 4.538 18 H 0.067 0.933 19 C -0.005 4.005 20 N -0.935 5.935 21 Si 0.966 3.034 22 H -0.258 1.258 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.091 4.091 26 H 0.110 0.890 27 C 0.090 3.910 28 O -0.589 6.589 29 C 0.134 3.866 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.416 0.584 38 H 0.413 0.587 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.067 0.933 43 H -0.008 1.008 44 H -0.007 1.007 45 H 0.263 0.737 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.401 0.599 49 H 0.086 0.914 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.879 -24.763 -1.134 29.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.000 4.000 3 O -0.288 6.288 4 C 0.417 3.583 5 O -0.494 6.494 6 N -0.341 5.341 7 C -0.027 4.027 8 C 0.064 3.936 9 H 0.123 0.877 10 N -0.377 5.377 11 C 0.402 3.598 12 O -0.513 6.513 13 N -0.384 5.384 14 C 0.026 3.974 15 C -0.139 4.139 16 C -0.015 4.015 17 C -0.576 4.576 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.182 1.182 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.111 4.111 26 H 0.128 0.872 27 C 0.012 3.988 28 O -0.398 6.398 29 C 0.013 3.987 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.254 0.746 38 H 0.249 0.751 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.010 0.990 44 H 0.011 0.989 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.252 0.748 49 H 0.104 0.896 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.118 -25.476 -0.261 29.626 hybrid contribution -0.057 1.051 -0.670 1.248 sum 15.062 -24.426 -0.931 28.711 Atomic orbital electron populations 1.21856 0.90437 1.04608 1.03524 1.23257 0.96438 0.77436 1.02844 1.86302 1.21089 1.34931 1.86511 1.17692 0.81476 0.82940 0.76221 1.90974 1.60698 1.39803 1.57888 1.47075 1.09012 1.02580 1.75467 1.22509 0.94770 0.82241 1.03186 1.21570 0.91233 0.85004 0.95801 0.87696 1.44786 1.51486 1.26288 1.15105 1.16084 0.79234 0.79971 0.84510 1.90925 1.63629 1.78697 1.18009 1.45018 1.51865 1.27043 1.14432 1.21065 0.92090 0.87654 0.96632 1.21586 0.99912 0.95423 0.96970 1.18955 0.93806 0.93244 0.95532 1.21722 1.28433 1.09843 0.97611 0.91514 1.26017 0.96033 1.00226 0.97957 1.70113 1.33741 1.31401 1.22280 0.85383 0.77888 0.78311 0.79350 1.18177 1.20722 1.20668 1.22596 0.93026 0.92919 1.02557 0.87179 1.22017 0.84021 0.96245 0.96545 1.86410 1.18279 1.64267 1.70819 1.22426 0.78081 0.95846 1.02338 0.87509 0.91517 0.91621 0.91136 0.91028 0.90418 0.91186 0.74620 0.75081 0.93494 0.93290 0.91286 0.91442 0.98971 0.98858 0.92869 0.91671 0.91828 0.74817 0.89588 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 71.98 0.74 -0.90 16 2 C 0.07 1.23 6.19 71.98 0.45 1.68 16 3 O -0.37 -8.39 9.82 -55.46 -0.54 -8.94 16 4 C 0.66 16.30 8.62 129.79 1.12 17.42 16 5 O -0.60 -17.79 16.39 19.80 0.32 -17.47 16 6 N -0.60 -11.86 3.32 -941.63 -3.13 -14.99 16 7 C 0.10 1.78 6.64 86.73 0.58 2.36 16 8 C 0.17 2.55 2.70 46.19 0.12 2.67 16 9 H 0.11 1.80 7.59 -2.38 -0.02 1.78 16 10 N -0.72 -11.04 5.13 -452.13 -2.32 -13.37 16 11 C 0.70 17.64 8.56 179.06 1.53 19.17 16 12 O -0.63 -21.93 16.07 -3.99 -0.06 -21.99 16 13 N -0.73 -17.59 5.56 -478.55 -2.66 -20.25 16 14 C 0.15 4.96 5.67 86.38 0.49 5.45 16 15 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 16 C 0.02 1.13 4.97 29.85 0.15 1.28 16 17 C -0.54 -29.38 9.11 25.60 0.23 -29.15 16 18 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 19 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 20 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 21 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 C -0.09 -1.01 2.92 -9.32 -0.03 -1.03 16 26 H 0.11 1.11 8.00 -2.39 -0.02 1.09 16 27 C 0.09 0.77 6.50 71.98 0.47 1.24 16 28 O -0.59 -5.69 13.63 -148.98 -2.03 -7.72 16 29 C 0.13 2.04 6.35 86.94 0.55 2.59 16 30 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.45 8.03 -2.39 -0.02 1.43 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.42 3.79 8.53 -92.71 -0.79 3.00 16 38 H 0.41 7.06 8.49 -92.70 -0.79 6.28 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.06 0.45 7.96 -2.39 -0.02 0.43 16 48 H 0.40 0.64 9.12 -74.06 -0.68 -0.03 16 49 H 0.09 1.17 7.91 -2.39 -0.02 1.15 16 50 H 0.08 1.46 8.03 -2.39 -0.02 1.44 16 Total: -1.00 -79.62 418.89 -2.38 -82.00 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -1.29 Total: 14.22 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 7.03 Total: 19.45 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -7.83 Total: -104.76 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -2.31 Total: -56.12 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -79.62 -2.38 -82.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678483958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.865 kcal (2) G-P(sol) polarization free energy of solvation -79.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds