Wall clock time and date at job start Wed Apr 1 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00107 * 2 1 4 4 C 1.53001 * 109.46991 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47738 * 55.19292 * 4 3 2 6 6 O 1.42907 * 109.46476 * 295.19116 * 4 3 2 7 7 C 1.42902 * 113.99687 * 150.00573 * 6 4 3 8 8 C 1.50697 * 109.47358 * 175.19484 * 4 3 2 9 9 O 1.21282 * 120.00516 * 111.83987 * 8 4 3 10 10 N 1.34773 * 119.99853 * 291.84991 * 8 4 3 11 11 C 1.47026 * 125.64999 * 174.81635 * 10 8 4 12 12 C 1.54328 * 107.27247 * 178.97094 * 11 10 8 13 13 C 1.55154 * 102.94216 * 337.81189 * 12 11 10 14 14 H 1.09002 * 111.00113 * 277.42252 * 13 12 11 15 15 C 1.52994 * 111.03787 * 153.58858 * 13 12 11 16 16 N 1.46901 * 109.47229 * 69.60544 * 15 13 12 17 17 C 1.46902 * 111.00404 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47396 * 179.97438 * 17 16 15 19 19 O 1.21287 * 119.99946 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99992 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99996 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00061 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00069 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00146 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99978 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47169 * 89.99797 * 25 23 21 27 27 H 1.48497 * 109.47390 * 209.99968 * 25 23 21 28 28 H 1.48500 * 109.47426 * 330.00063 * 25 23 21 29 29 C 1.47426 * 125.64824 * 354.85554 * 10 8 4 30 30 H 1.08998 * 109.47493 * 300.00724 * 1 2 3 31 31 H 1.09003 * 109.46684 * 60.00922 * 1 2 3 32 32 H 1.08996 * 109.47160 * 180.02562 * 1 2 3 33 33 H 1.08988 * 109.47793 * 59.99195 * 3 2 1 34 34 H 1.09005 * 109.47022 * 299.99216 * 3 2 1 35 35 H 1.09001 * 109.47511 * 59.99322 * 7 6 4 36 36 H 1.08999 * 109.47127 * 180.02562 * 7 6 4 37 37 H 1.09000 * 109.46893 * 299.99401 * 7 6 4 38 38 H 1.08991 * 109.88401 * 298.39050 * 11 10 8 39 39 H 1.09000 * 109.88017 * 59.40500 * 11 10 8 40 40 H 1.08996 * 110.72313 * 219.44373 * 12 11 10 41 41 H 1.09004 * 110.71877 * 96.17074 * 12 11 10 42 42 H 1.09003 * 109.47600 * 189.60187 * 15 13 12 43 43 H 1.08998 * 109.47160 * 309.60166 * 15 13 12 44 44 H 1.00907 * 110.99654 * 303.95175 * 16 15 13 45 45 H 1.08998 * 109.46569 * 299.99887 * 17 16 15 46 46 H 1.09000 * 109.47157 * 59.99497 * 17 16 15 47 47 H 0.96995 * 119.99956 * 359.97438 * 20 18 17 48 48 H 0.97007 * 120.00220 * 180.02562 * 24 23 21 49 49 H 1.09002 * 110.36907 * 85.25920 * 29 10 8 50 50 H 1.08996 * 110.36423 * 322.93445 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8511 0.5712 -0.8446 6 8 3.9654 0.5750 1.2183 7 6 5.1687 -0.1859 1.0948 8 6 4.1481 2.5562 -0.1197 9 8 4.7585 3.0310 0.8147 10 7 4.0175 3.2555 -1.2644 11 6 4.4683 4.6382 -1.4800 12 6 4.1327 5.0071 -2.9404 13 6 4.0241 3.6227 -3.6324 14 1 5.0087 3.2468 -3.9107 15 6 3.1010 3.6885 -4.8507 16 7 3.7447 4.4757 -5.9109 17 6 2.8851 4.5611 -7.0990 18 6 3.5769 5.3747 -8.1622 19 8 4.6776 5.8383 -7.9508 20 7 2.9725 5.5872 -9.3480 21 6 3.6022 6.3270 -10.3155 22 1 4.5822 6.7397 -10.1273 23 6 2.9793 6.5456 -11.5381 24 7 3.5830 7.2542 -12.4656 25 14 1.2844 5.8311 -11.8640 26 1 0.2467 6.8061 -11.4422 27 1 1.1371 5.5477 -13.3142 28 1 1.1219 4.5715 -11.0945 29 6 3.3983 2.7609 -2.5075 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8464 0.8898 34 1 1.6887 1.8463 -0.8901 35 1 5.9764 0.4637 0.7576 36 1 5.4276 -0.6159 2.0623 37 1 5.0196 -0.9863 0.3701 38 1 3.9453 5.3091 -0.7986 39 1 5.5436 4.7074 -1.3156 40 1 4.9347 5.5978 -3.3831 41 1 3.1839 5.5410 -2.9950 42 1 2.9069 2.6795 -5.2145 43 1 2.1598 4.1602 -4.5684 44 1 3.9934 5.3953 -5.5780 45 1 2.6891 3.5583 -7.4784 46 1 1.9426 5.0391 -6.8320 47 1 2.0925 5.2162 -9.5172 48 1 3.1480 7.4072 -13.3191 49 1 2.3182 2.9041 -2.4764 50 1 3.6381 1.7083 -2.6580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690734821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:39 Heat of formation + Delta-G solvation = -145.379904 kcal Electronic energy + Delta-G solvation = -30043.561992 eV Core-core repulsion = 25685.725104 eV Total energy + Delta-G solvation = -4357.836888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83914 -39.02089 -38.47757 -38.02806 -37.19271 -35.51839 -33.96677 -32.58433 -31.71485 -31.18768 -29.72059 -27.51324 -27.21738 -26.52174 -25.12657 -24.40816 -23.16191 -22.71513 -20.68516 -19.84574 -19.42239 -18.40176 -18.09701 -17.38424 -17.05132 -16.80766 -16.24208 -16.00454 -15.72646 -15.62065 -15.48149 -14.97117 -14.75376 -14.61090 -14.30487 -14.02658 -13.95426 -13.70044 -13.39681 -13.31380 -13.12701 -12.89359 -12.74077 -12.46178 -12.36613 -12.21752 -12.08616 -11.82484 -11.72907 -11.57234 -11.39011 -11.21355 -11.05005 -10.98162 -10.90676 -10.63462 -10.21151 -10.01427 -9.73653 -9.61527 -9.07842 -8.66149 -8.26717 -8.20759 -6.34777 -3.86511 2.03963 2.37198 2.98865 3.02857 3.11804 3.23634 3.28482 3.68836 3.81449 3.99961 4.06414 4.23503 4.34712 4.41923 4.47744 4.59386 4.70677 4.82230 4.85466 4.86385 4.90585 4.96841 5.00962 5.02009 5.07504 5.12687 5.15053 5.17410 5.23343 5.30415 5.36570 5.46347 5.50037 5.55960 5.58986 5.73364 5.76254 5.86172 5.87572 6.00124 6.51964 6.59199 6.97012 7.03861 7.46771 7.54041 7.70711 8.10394 8.55448 8.90990 9.38240 9.77942 10.78240 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.001806 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.582723 B =15501.630181 C =16513.146333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.070 3.930 4 C 0.081 3.919 5 H 0.095 0.905 6 O -0.351 6.351 7 C 0.029 3.971 8 C 0.508 3.492 9 O -0.517 6.517 10 N -0.616 5.616 11 C 0.108 3.892 12 C -0.132 4.132 13 C -0.097 4.097 14 H 0.100 0.900 15 C 0.070 3.930 16 N -0.668 5.668 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.099 3.901 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.031 0.969 44 H 0.351 0.649 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.274 0.726 49 H 0.073 0.927 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 -14.668 24.469 29.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C -0.007 4.007 4 C 0.019 3.981 5 H 0.113 0.887 6 O -0.267 6.267 7 C -0.067 4.067 8 C 0.295 3.705 9 O -0.392 6.392 10 N -0.353 5.353 11 C -0.014 4.014 12 C -0.170 4.170 13 C -0.116 4.116 14 H 0.118 0.882 15 C -0.060 4.060 16 N -0.301 5.301 17 C -0.085 4.085 18 C 0.234 3.766 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.025 4.025 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.171 0.829 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.330 -14.727 24.937 29.644 hybrid contribution -2.095 0.310 -0.528 2.182 sum -8.425 -14.416 24.409 29.573 Atomic orbital electron populations 1.22797 0.80318 1.03187 1.00258 1.87902 1.20149 1.26501 1.95473 1.22457 0.90225 0.86103 1.01948 1.21928 0.94156 0.91616 0.90435 0.88725 1.88023 1.42292 1.66808 1.29617 1.22891 0.86335 0.94384 1.03085 1.20789 0.81050 0.87210 0.81441 1.90741 1.40898 1.69833 1.37743 1.48595 1.59717 1.15115 1.11883 1.21981 1.00492 0.81972 0.96954 1.22788 1.03439 0.97426 0.93340 1.22386 1.01041 0.95113 0.93084 0.88191 1.21861 0.94335 0.99299 0.90522 1.60031 1.42986 1.22109 1.04925 1.21705 0.94206 1.00837 0.91715 1.19695 0.87668 0.85617 0.83601 1.90568 1.20527 1.53563 1.80004 1.42207 1.18129 1.48780 1.13815 1.19431 1.04380 1.27475 0.92172 0.86270 1.25049 0.98357 0.97210 0.95579 1.69620 1.38102 1.38456 1.05837 0.86665 0.84373 0.79387 0.78906 1.19665 1.20150 1.19480 1.22495 0.97679 0.99078 0.83222 0.93797 0.93777 0.89203 0.91677 0.91126 0.93745 0.88989 0.93566 0.91292 0.91010 0.88909 0.90450 0.90549 0.95070 0.82880 0.89399 0.93729 0.79694 0.91580 0.90850 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.24 10.67 -40.29 -0.43 -3.67 16 3 C 0.07 0.55 5.52 37.16 0.20 0.75 16 4 C 0.08 0.74 2.18 -27.88 -0.06 0.68 16 5 H 0.10 0.70 7.03 -51.93 -0.37 0.33 16 6 O -0.35 -3.89 9.86 -59.71 -0.59 -4.48 16 7 C 0.03 0.24 10.81 101.05 1.09 1.33 16 8 C 0.51 5.56 7.14 -10.99 -0.08 5.49 16 9 O -0.52 -7.73 16.85 -14.22 -0.24 -7.97 16 10 N -0.62 -5.46 3.33 -170.52 -0.57 -6.03 16 11 C 0.11 0.94 6.87 -3.06 -0.02 0.92 16 12 C -0.13 -1.02 5.76 -24.90 -0.14 -1.16 16 13 C -0.10 -0.76 3.27 -88.47 -0.29 -1.05 16 14 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 15 C 0.07 0.62 5.18 -3.83 -0.02 0.60 16 16 N -0.67 -9.00 6.13 -115.06 -0.71 -9.70 16 17 C 0.05 0.72 6.17 -4.98 -0.03 0.69 16 18 C 0.45 9.74 7.82 -10.99 -0.09 9.65 16 19 O -0.56 -14.67 15.78 5.55 0.09 -14.58 16 20 N -0.59 -13.59 5.09 -10.97 -0.06 -13.64 16 21 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 22 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.34 13.96 55.50 0.77 -24.57 16 25 Si 0.88 18.87 27.74 -169.99 -4.71 14.15 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 28 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 29 C 0.10 0.64 5.17 -2.53 -0.01 0.63 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.54 8.14 -51.94 -0.42 0.12 16 34 H 0.07 0.41 6.05 -51.93 -0.31 0.10 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.30 8.09 -51.93 -0.42 -0.12 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.55 7.97 -51.93 -0.41 0.14 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.25 8.04 -51.93 -0.42 -0.17 16 44 H 0.35 4.93 7.80 -39.29 -0.31 4.63 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.37 7.42 5.76 -40.82 -0.24 7.19 16 48 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.07 0.38 7.04 -51.93 -0.37 0.01 16 50 H 0.08 0.43 7.27 -51.93 -0.38 0.05 16 LS Contribution 409.28 15.07 6.17 6.17 Total: -1.00 -36.07 409.28 -7.12 -43.19 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.27 Total: 8.95 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 1.42 Total: 12.19 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.55 Total: -53.94 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.17 Total: -30.70 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.07 -7.12 -43.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690734821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.194 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds