Wall clock time and date at job start Wed Apr 1 2020 02:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00107 * 2 1 4 4 C 1.53001 * 109.46991 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47738 * 55.19292 * 4 3 2 6 6 O 1.42907 * 109.46476 * 295.19116 * 4 3 2 7 7 C 1.42902 * 113.99687 * 150.00573 * 6 4 3 8 8 C 1.50697 * 109.47358 * 175.19484 * 4 3 2 9 9 O 1.21282 * 120.00516 * 111.83987 * 8 4 3 10 10 N 1.34773 * 119.99853 * 291.84991 * 8 4 3 11 11 C 1.47026 * 125.64999 * 174.81635 * 10 8 4 12 12 C 1.54328 * 107.27247 * 178.97094 * 11 10 8 13 13 C 1.55154 * 102.94216 * 337.81189 * 12 11 10 14 14 H 1.09002 * 111.00113 * 277.42252 * 13 12 11 15 15 C 1.52994 * 111.03787 * 153.58858 * 13 12 11 16 16 N 1.46901 * 109.47229 * 69.60544 * 15 13 12 17 17 C 1.46902 * 111.00404 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47396 * 179.97438 * 17 16 15 19 19 O 1.21287 * 119.99946 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99992 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99996 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00061 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00069 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00146 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99978 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47169 * 89.99797 * 25 23 21 27 27 H 1.48497 * 109.47390 * 209.99968 * 25 23 21 28 28 H 1.48500 * 109.47426 * 330.00063 * 25 23 21 29 29 C 1.47426 * 125.64824 * 354.85554 * 10 8 4 30 30 H 1.08998 * 109.47493 * 300.00724 * 1 2 3 31 31 H 1.09003 * 109.46684 * 60.00922 * 1 2 3 32 32 H 1.08996 * 109.47160 * 180.02562 * 1 2 3 33 33 H 1.08988 * 109.47793 * 59.99195 * 3 2 1 34 34 H 1.09005 * 109.47022 * 299.99216 * 3 2 1 35 35 H 1.09001 * 109.47511 * 59.99322 * 7 6 4 36 36 H 1.08999 * 109.47127 * 180.02562 * 7 6 4 37 37 H 1.09000 * 109.46893 * 299.99401 * 7 6 4 38 38 H 1.08991 * 109.88401 * 298.39050 * 11 10 8 39 39 H 1.09000 * 109.88017 * 59.40500 * 11 10 8 40 40 H 1.08996 * 110.72313 * 219.44373 * 12 11 10 41 41 H 1.09004 * 110.71877 * 96.17074 * 12 11 10 42 42 H 1.09003 * 109.47600 * 189.60187 * 15 13 12 43 43 H 1.08998 * 109.47160 * 309.60166 * 15 13 12 44 44 H 1.00907 * 110.99654 * 303.95175 * 16 15 13 45 45 H 1.08998 * 109.46569 * 299.99887 * 17 16 15 46 46 H 1.09000 * 109.47157 * 59.99497 * 17 16 15 47 47 H 0.96995 * 119.99956 * 359.97438 * 20 18 17 48 48 H 0.97007 * 120.00220 * 180.02562 * 24 23 21 49 49 H 1.09002 * 110.36907 * 85.25920 * 29 10 8 50 50 H 1.08996 * 110.36423 * 322.93445 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8511 0.5712 -0.8446 6 8 3.9654 0.5750 1.2183 7 6 5.1687 -0.1859 1.0948 8 6 4.1481 2.5562 -0.1197 9 8 4.7585 3.0310 0.8147 10 7 4.0175 3.2555 -1.2644 11 6 4.4683 4.6382 -1.4800 12 6 4.1327 5.0071 -2.9404 13 6 4.0241 3.6227 -3.6324 14 1 5.0087 3.2468 -3.9107 15 6 3.1010 3.6885 -4.8507 16 7 3.7447 4.4757 -5.9109 17 6 2.8851 4.5611 -7.0990 18 6 3.5769 5.3747 -8.1622 19 8 4.6776 5.8383 -7.9508 20 7 2.9725 5.5872 -9.3480 21 6 3.6022 6.3270 -10.3155 22 1 4.5822 6.7397 -10.1273 23 6 2.9793 6.5456 -11.5381 24 7 3.5830 7.2542 -12.4656 25 14 1.2844 5.8311 -11.8640 26 1 0.2467 6.8061 -11.4422 27 1 1.1371 5.5477 -13.3142 28 1 1.1219 4.5715 -11.0945 29 6 3.3983 2.7609 -2.5075 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8464 0.8898 34 1 1.6887 1.8463 -0.8901 35 1 5.9764 0.4637 0.7576 36 1 5.4276 -0.6159 2.0623 37 1 5.0196 -0.9863 0.3701 38 1 3.9453 5.3091 -0.7986 39 1 5.5436 4.7074 -1.3156 40 1 4.9347 5.5978 -3.3831 41 1 3.1839 5.5410 -2.9950 42 1 2.9069 2.6795 -5.2145 43 1 2.1598 4.1602 -4.5684 44 1 3.9934 5.3953 -5.5780 45 1 2.6891 3.5583 -7.4784 46 1 1.9426 5.0391 -6.8320 47 1 2.0925 5.2162 -9.5172 48 1 3.1480 7.4072 -13.3191 49 1 2.3182 2.9041 -2.4764 50 1 3.6381 1.7083 -2.6580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690734821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:38 Heat of formation + Delta-G solvation = -175.235780 kcal Electronic energy + Delta-G solvation = -30044.856640 eV Core-core repulsion = 25685.725104 eV Total energy + Delta-G solvation = -4359.131536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58307 -40.29270 -39.55334 -38.73204 -37.93550 -36.60190 -35.82835 -33.74652 -33.35536 -31.93840 -30.37729 -28.73211 -27.72821 -27.13464 -26.44783 -25.23307 -24.30108 -23.37818 -21.40895 -21.17215 -20.56951 -20.21922 -18.79091 -18.14444 -17.87476 -17.54848 -17.34524 -16.98603 -16.70800 -16.54746 -16.25783 -16.23048 -15.75267 -15.60404 -15.22527 -15.01129 -14.85994 -14.70061 -14.56426 -14.36681 -14.25513 -13.92659 -13.70182 -13.38978 -13.33336 -13.25322 -12.98461 -12.77070 -12.66343 -12.39314 -12.37960 -12.20180 -12.05233 -11.95509 -11.72537 -11.67147 -11.60023 -11.48489 -10.71369 -10.51467 -10.40407 -10.22759 -9.81172 -9.25226 -8.39312 -6.00378 1.26555 1.32218 1.37874 1.47067 1.66270 1.99601 2.25313 2.63128 2.69728 2.76919 3.17586 3.33302 3.37732 3.62546 3.75642 3.79948 3.85799 3.97950 4.17438 4.20221 4.24295 4.32383 4.38872 4.44523 4.46159 4.47409 4.50918 4.54733 4.59305 4.61206 4.61836 4.76803 4.77893 4.79397 4.88534 4.91337 4.94975 5.10235 5.20228 5.35927 5.54917 5.88828 5.93627 6.10230 6.10397 6.31507 6.45797 6.62227 6.90848 6.92350 7.42840 8.00119 8.78363 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.001806 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.582723 B =15501.630181 C =16513.146333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.074 3.926 4 C 0.081 3.919 5 H 0.115 0.885 6 O -0.378 6.378 7 C 0.026 3.974 8 C 0.506 3.494 9 O -0.569 6.569 10 N -0.612 5.612 11 C 0.106 3.894 12 C -0.125 4.125 13 C -0.092 4.092 14 H 0.083 0.917 15 C 0.074 3.926 16 N -0.691 5.691 17 C 0.063 3.937 18 C 0.446 3.554 19 O -0.616 6.616 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.053 0.947 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.257 1.257 27 H -0.278 1.278 28 H -0.228 1.228 29 C 0.099 3.901 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.034 0.966 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.344 0.656 45 H 0.116 0.884 46 H 0.080 0.920 47 H 0.390 0.610 48 H 0.278 0.722 49 H 0.100 0.900 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 -17.256 24.715 32.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C -0.003 4.003 4 C 0.019 3.981 5 H 0.133 0.867 6 O -0.295 6.295 7 C -0.070 4.070 8 C 0.294 3.706 9 O -0.448 6.448 10 N -0.347 5.347 11 C -0.016 4.016 12 C -0.163 4.163 13 C -0.111 4.111 14 H 0.101 0.899 15 C -0.055 4.055 16 N -0.323 5.323 17 C -0.069 4.069 18 C 0.234 3.766 19 O -0.501 6.501 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.072 0.928 23 C -0.217 4.217 24 N -0.577 5.577 25 Si 0.787 3.213 26 H -0.181 1.181 27 H -0.203 1.203 28 H -0.151 1.151 29 C -0.023 4.023 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.163 0.837 45 H 0.134 0.866 46 H 0.098 0.902 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.118 0.882 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.399 -17.348 25.185 32.301 hybrid contribution -0.689 1.166 -0.554 1.464 sum -11.087 -16.182 24.631 31.487 Atomic orbital electron populations 1.22987 0.78824 1.04196 1.01155 1.87865 1.21815 1.26747 1.95631 1.22450 0.89152 0.86151 1.02573 1.22062 0.95050 0.90447 0.90507 0.86715 1.87984 1.43164 1.67255 1.31115 1.23018 0.85283 0.94422 1.04284 1.21193 0.80395 0.87796 0.81184 1.90712 1.43328 1.71106 1.39632 1.48647 1.58938 1.14918 1.12182 1.21979 0.99613 0.82268 0.97765 1.22732 1.03695 0.97629 0.92246 1.22279 1.00394 0.95113 0.93346 0.89854 1.21940 0.94835 0.99477 0.89228 1.60024 1.44090 1.22251 1.05965 1.21627 0.94480 1.00911 0.89887 1.21133 0.87027 0.84307 0.84109 1.90549 1.23205 1.55313 1.81022 1.42039 1.18908 1.48889 1.13513 1.18999 1.02903 1.29420 0.94467 0.92842 1.26162 1.04047 0.97078 0.94366 1.69813 1.40947 1.40253 1.06675 0.85339 0.76771 0.80224 0.79008 1.18124 1.20315 1.15095 1.22686 0.98800 0.99649 0.81144 0.93664 0.92102 0.88238 0.92830 0.88666 0.94771 0.88039 0.91682 0.91385 0.92628 0.90024 0.89088 0.88911 0.92721 0.83704 0.86583 0.90177 0.77399 0.91216 0.88189 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.44 16 2 O -0.40 -5.85 10.67 -144.14 -1.54 -7.38 16 3 C 0.07 0.98 5.52 71.98 0.40 1.38 16 4 C 0.08 1.36 2.18 29.85 0.07 1.42 16 5 H 0.12 1.40 7.03 -2.39 -0.02 1.38 16 6 O -0.38 -8.19 9.86 -125.57 -1.24 -9.43 16 7 C 0.03 0.41 10.81 113.37 1.23 1.63 16 8 C 0.51 10.75 7.14 87.66 0.63 11.37 16 9 O -0.57 -17.49 16.85 15.87 0.27 -17.22 16 10 N -0.61 -9.85 3.33 -811.79 -2.70 -12.55 16 11 C 0.11 1.79 6.87 86.73 0.60 2.39 16 12 C -0.13 -1.73 5.76 31.78 0.18 -1.55 16 13 C -0.09 -1.17 3.27 -9.40 -0.03 -1.21 16 14 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 15 C 0.07 0.98 5.18 86.30 0.45 1.43 16 16 N -0.69 -16.60 6.13 -517.95 -3.17 -19.77 16 17 C 0.06 1.64 6.17 85.55 0.53 2.17 16 18 C 0.45 18.95 7.82 87.65 0.69 19.63 16 19 O -0.62 -32.96 15.78 -3.05 -0.05 -33.00 16 20 N -0.59 -26.63 5.09 -307.00 -1.56 -28.20 16 21 C -0.33 -18.85 10.16 84.04 0.85 -17.99 16 22 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 23 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 24 N -0.94 -55.82 13.96 21.66 0.30 -55.52 16 25 Si 0.97 37.41 27.74 68.60 1.90 39.31 16 26 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 27 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 28 H -0.23 -7.23 6.52 99.48 0.65 -6.58 16 29 C 0.10 0.92 5.17 86.86 0.45 1.37 16 30 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 0.74 6.05 -2.38 -0.01 0.72 16 35 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 0.75 8.09 -2.39 -0.02 0.73 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.04 7.97 -2.38 -0.02 1.02 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 0.53 8.04 -2.39 -0.02 0.51 16 44 H 0.34 9.11 7.80 -89.69 -0.70 8.41 16 45 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.39 14.24 5.76 -92.71 -0.53 13.71 16 48 H 0.28 15.16 8.31 -92.70 -0.77 14.39 16 49 H 0.10 0.48 7.04 -2.39 -0.02 0.46 16 50 H 0.10 0.63 7.27 -2.39 -0.02 0.61 16 Total: -1.00 -86.41 409.28 -0.39 -86.80 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.34 Total: 33.99 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 7.74 Total: 22.98 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -7.13 Total: -116.04 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: -2.56 Total: -67.04 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 1.90 Total: 39.31 kcal Total: -86.41 -0.39 -86.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690734821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.438 kcal (2) G-P(sol) polarization free energy of solvation -86.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds