Wall clock time and date at job start Wed Apr 1 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00214 * 2 1 4 4 C 1.52997 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46740 * 304.99924 * 4 3 2 6 6 O 1.42904 * 109.47565 * 64.99404 * 4 3 2 7 7 C 1.42897 * 114.00000 * 270.00690 * 6 4 3 8 8 C 1.50694 * 109.47571 * 184.99849 * 4 3 2 9 9 O 1.21273 * 120.00628 * 244.99581 * 8 4 3 10 10 N 1.34784 * 119.99695 * 64.99360 * 8 4 3 11 11 C 1.46502 * 119.99907 * 179.97438 * 10 8 4 12 12 H 1.09003 * 110.36955 * 324.28073 * 11 10 8 13 13 C 1.54266 * 110.32054 * 86.45958 * 11 10 8 14 14 C 1.54373 * 105.15206 * 118.94810 * 13 11 10 15 15 N 1.48555 * 104.59487 * 23.79855 * 14 13 11 16 16 C 1.46905 * 111.00269 * 200.95949 * 15 14 13 17 17 C 1.50700 * 109.46965 * 293.85467 * 16 15 14 18 18 O 1.21286 * 120.00270 * 354.17088 * 17 16 15 19 19 N 1.34772 * 119.99623 * 174.17355 * 17 16 15 20 20 C 1.37099 * 120.00164 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99439 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00335 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00285 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00039 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47161 * 60.00200 * 24 22 20 26 26 H 1.48498 * 109.47152 * 179.97438 * 24 22 20 27 27 H 1.48489 * 109.47422 * 300.00152 * 24 22 20 28 28 C 1.48556 * 104.22484 * 320.52190 * 15 14 13 29 29 H 1.09009 * 110.40801 * 280.70186 * 28 15 14 30 30 C 1.53001 * 110.41353 * 158.37945 * 28 15 14 31 31 H 1.08995 * 109.47366 * 59.99620 * 1 2 3 32 32 H 1.08997 * 109.47505 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46969 * 299.99771 * 1 2 3 34 34 H 1.08997 * 109.47408 * 59.99736 * 3 2 1 35 35 H 1.09004 * 109.47075 * 299.99764 * 3 2 1 36 36 H 1.08998 * 109.47162 * 299.99498 * 7 6 4 37 37 H 1.08995 * 109.47623 * 59.99863 * 7 6 4 38 38 H 1.08999 * 109.46700 * 179.97438 * 7 6 4 39 39 H 0.96995 * 120.00547 * 0.02562 * 10 8 4 40 40 H 1.09001 * 110.32406 * 359.97438 * 13 11 10 41 41 H 1.09005 * 110.32437 * 237.89870 * 13 11 10 42 42 H 1.08997 * 110.41324 * 142.57957 * 14 13 11 43 43 H 1.09005 * 110.40890 * 264.90265 * 14 13 11 44 44 H 1.09000 * 109.46692 * 53.85431 * 16 15 14 45 45 H 1.08998 * 109.47136 * 173.85190 * 16 15 14 46 46 H 0.97008 * 120.00509 * 359.97438 * 19 17 16 47 47 H 0.96993 * 120.00356 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.47000 * 61.45495 * 30 28 15 49 49 H 1.09004 * 109.46833 * 181.44883 * 30 28 15 50 50 H 1.08993 * 109.47210 * 301.44914 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5681 0.8410 6 8 3.9649 0.5794 -1.2219 7 6 4.0463 -0.8462 -1.1670 8 6 4.1481 2.5558 0.1231 9 8 4.8064 3.0104 -0.7883 10 7 3.9644 3.2770 1.2469 11 6 4.5605 4.6098 1.3675 12 1 5.5325 4.6367 0.8749 13 6 3.6223 5.6732 0.7602 14 6 3.2754 6.6200 1.9290 15 7 4.3987 6.4586 2.8876 16 6 4.0049 6.8856 4.2370 17 6 3.7456 8.3701 4.2384 18 8 3.9771 9.0272 3.2456 19 7 3.2565 8.9676 5.3430 20 6 3.0211 10.3182 5.3446 21 1 3.2272 10.9033 4.4605 22 6 2.5163 10.9341 6.4832 23 7 2.2650 10.2222 7.5588 24 14 2.1962 12.7745 6.4856 25 1 1.2062 13.1061 5.4295 26 1 1.6620 13.1823 7.8098 27 1 3.4652 13.4980 6.2191 28 6 4.6995 5.0042 2.8559 29 1 3.9816 4.4542 3.4645 30 6 6.1247 4.7432 3.3476 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6886 1.8464 0.8899 35 1 1.6887 1.8463 -0.8900 36 1 4.7574 -1.1401 -0.3951 37 1 3.0646 -1.2574 -0.9322 38 1 4.3786 -1.2285 -2.1322 39 1 3.4382 2.9133 1.9761 40 1 2.7186 5.2034 0.3720 41 1 4.1332 6.2208 -0.0318 42 1 3.2191 7.6508 1.5794 43 1 2.3334 6.3242 2.3911 44 1 3.0987 6.3581 4.5349 45 1 4.8064 6.6560 4.9391 46 1 3.0710 8.4420 6.1370 47 1 1.9123 10.6520 8.3535 48 1 6.2207 5.0812 4.3794 49 1 6.3377 3.6755 3.2938 50 1 6.8308 5.2866 2.7200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692390997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:21 Heat of formation + Delta-G solvation = -146.736624 kcal Electronic energy + Delta-G solvation = -30714.611044 eV Core-core repulsion = 26356.715324 eV Total energy + Delta-G solvation = -4357.895720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63122 -39.39995 -38.42698 -37.65883 -37.17640 -34.61125 -33.85800 -31.89050 -31.40030 -31.19612 -30.29608 -27.50287 -26.66247 -26.23136 -25.32995 -24.18087 -23.79689 -21.55635 -20.58756 -20.25456 -19.14277 -17.95448 -17.89612 -17.56261 -16.88339 -16.45540 -16.22220 -15.90972 -15.68270 -15.25573 -15.08822 -14.77563 -14.55340 -14.40668 -14.31291 -14.03611 -13.84621 -13.54820 -13.31662 -13.21442 -12.98704 -12.52817 -12.30713 -12.27307 -11.95195 -11.90067 -11.67522 -11.59625 -11.50522 -11.38793 -11.25666 -11.12690 -10.81677 -10.65105 -10.45472 -10.32752 -10.22994 -10.20612 -9.81111 -9.50102 -9.28359 -8.52823 -8.09177 -7.96528 -6.43257 -3.84044 2.19254 2.47596 3.18982 3.22995 3.24735 3.29178 3.61159 3.88836 4.01476 4.22701 4.31182 4.36175 4.47834 4.55289 4.67985 4.75322 4.87926 4.92300 4.97988 5.01854 5.13462 5.16947 5.21424 5.21848 5.23515 5.24779 5.33252 5.42487 5.49270 5.60220 5.65662 5.76051 5.86535 5.89331 5.93503 6.11690 6.19247 6.28030 6.30756 6.44837 6.52623 6.64764 7.07384 7.12367 7.21312 7.53623 7.91386 8.04362 8.60124 9.16672 9.52551 10.04540 10.74443 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.001994 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.680543 B =14037.491368 C =14654.485184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.044 3.956 4 C 0.077 3.923 5 H 0.095 0.905 6 O -0.355 6.355 7 C 0.028 3.972 8 C 0.518 3.482 9 O -0.506 6.506 10 N -0.721 5.721 11 C 0.147 3.853 12 H 0.103 0.897 13 C -0.133 4.133 14 C 0.037 3.963 15 N -0.476 5.476 16 C 0.036 3.964 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.052 3.948 29 H 0.054 0.946 30 C -0.136 4.136 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.398 0.602 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.038 0.962 44 H 0.048 0.952 45 H 0.091 0.909 46 H 0.391 0.609 47 H 0.272 0.728 48 H 0.060 0.940 49 H 0.056 0.944 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -24.021 -9.384 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.033 4.033 4 C 0.015 3.985 5 H 0.112 0.888 6 O -0.272 6.272 7 C -0.068 4.068 8 C 0.302 3.698 9 O -0.380 6.380 10 N -0.375 5.375 11 C 0.042 3.958 12 H 0.121 0.879 13 C -0.172 4.172 14 C -0.090 4.090 15 N -0.200 5.200 16 C -0.096 4.096 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.058 4.058 29 H 0.072 0.928 30 C -0.194 4.194 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.121 0.879 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.442 -22.903 -10.858 25.350 hybrid contribution -1.682 -0.058 1.628 2.341 sum -2.124 -22.961 -9.230 24.838 Atomic orbital electron populations 1.22795 0.80320 1.03042 1.00431 1.87834 1.20345 1.26972 1.95521 1.23036 0.92438 0.85889 1.01977 1.21909 0.92508 0.93621 0.90479 0.88759 1.88025 1.87746 1.20294 1.31147 1.22960 1.01209 0.80173 1.02452 1.20043 0.81204 0.85843 0.82702 1.90759 1.38393 1.70436 1.38365 1.46126 1.54812 1.18193 1.18348 1.21852 0.98003 0.80232 0.95673 0.87889 1.22754 0.99291 0.96437 0.98692 1.23168 0.91594 1.01995 0.92281 1.65139 1.36121 1.12562 1.06218 1.22074 1.00028 0.96335 0.91141 1.19663 0.84230 0.88261 0.84960 1.90515 1.56261 1.65385 1.33786 1.41855 1.56576 1.09003 1.12714 1.19645 1.39875 0.83270 1.00007 0.87962 1.25254 0.97257 1.00485 0.94957 1.69598 1.44953 1.36702 1.03164 0.85919 0.78918 0.82172 0.77225 1.19936 1.21002 1.19867 1.22920 0.98194 0.90440 0.94213 0.92843 1.21714 0.95024 1.00748 1.01887 0.93726 0.89331 0.93724 0.91776 0.91501 0.94120 0.92205 0.89455 0.76697 0.91272 0.90094 0.87885 0.94414 0.93445 0.89080 0.77546 0.91841 0.92097 0.92524 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.02 8.83 -40.08 -0.35 -3.38 16 3 C 0.04 0.34 5.57 37.16 0.21 0.55 16 4 C 0.08 0.70 2.91 -27.89 -0.08 0.61 16 5 H 0.09 0.65 7.79 -51.93 -0.40 0.24 16 6 O -0.35 -4.00 9.88 -59.70 -0.59 -4.59 16 7 C 0.03 0.22 10.71 101.05 1.08 1.30 16 8 C 0.52 5.81 7.17 -10.98 -0.08 5.73 16 9 O -0.51 -8.00 16.21 -14.30 -0.23 -8.23 16 10 N -0.72 -6.59 4.94 -52.35 -0.26 -6.85 16 11 C 0.15 1.71 2.92 -66.42 -0.19 1.51 16 12 H 0.10 1.37 7.36 -51.93 -0.38 0.98 16 13 C -0.13 -1.72 6.77 -25.35 -0.17 -1.89 16 14 C 0.04 0.58 5.72 -2.19 -0.01 0.57 16 15 N -0.48 -7.56 4.77 -223.43 -1.07 -8.63 16 16 C 0.04 0.62 5.24 -4.97 -0.03 0.59 16 17 C 0.44 10.25 7.47 -10.99 -0.08 10.16 16 18 O -0.58 -15.31 14.39 5.55 0.08 -15.23 16 19 N -0.56 -14.05 5.29 -10.97 -0.06 -14.11 16 20 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 21 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 24 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.05 0.61 2.59 -65.95 -0.17 0.44 16 29 H 0.05 0.55 7.59 -51.92 -0.39 0.15 16 30 C -0.14 -1.48 9.35 37.16 0.35 -1.13 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.37 7.77 -51.93 -0.40 -0.03 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.26 8.08 -51.93 -0.42 -0.15 16 37 H 0.06 0.44 6.40 -51.93 -0.33 0.11 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.40 2.51 8.06 -40.82 -0.33 2.18 16 40 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.10 1.94 6.85 -51.93 -0.36 1.59 16 43 H 0.04 0.56 7.88 -51.93 -0.41 0.15 16 44 H 0.05 0.73 7.96 -51.93 -0.41 0.31 16 45 H 0.09 1.42 7.35 -51.93 -0.38 1.04 16 46 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 48 H 0.06 0.66 7.40 -51.93 -0.38 0.28 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 LS Contribution 407.79 15.07 6.15 6.15 Total: -1.00 -34.36 407.79 -7.18 -41.54 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -8.24 Total: 9.13 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 1.69 Total: 11.85 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.66 Total: -53.13 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -1.10 Total: -31.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.36 -7.18 -41.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692390997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.195 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds