Wall clock time and date at job start Wed Apr 1 2020 02:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00214 * 2 1 4 4 C 1.52997 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46740 * 304.99924 * 4 3 2 6 6 O 1.42904 * 109.47565 * 64.99404 * 4 3 2 7 7 C 1.42897 * 114.00000 * 270.00690 * 6 4 3 8 8 C 1.50694 * 109.47571 * 184.99849 * 4 3 2 9 9 O 1.21273 * 120.00628 * 244.99581 * 8 4 3 10 10 N 1.34784 * 119.99695 * 64.99360 * 8 4 3 11 11 C 1.46502 * 119.99907 * 179.97438 * 10 8 4 12 12 H 1.09003 * 110.36955 * 324.28073 * 11 10 8 13 13 C 1.54266 * 110.32054 * 86.45958 * 11 10 8 14 14 C 1.54373 * 105.15206 * 118.94810 * 13 11 10 15 15 N 1.48555 * 104.59487 * 23.79855 * 14 13 11 16 16 C 1.46905 * 111.00269 * 200.95949 * 15 14 13 17 17 C 1.50700 * 109.46965 * 293.85467 * 16 15 14 18 18 O 1.21286 * 120.00270 * 354.17088 * 17 16 15 19 19 N 1.34772 * 119.99623 * 174.17355 * 17 16 15 20 20 C 1.37099 * 120.00164 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99439 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00335 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00285 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00039 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47161 * 60.00200 * 24 22 20 26 26 H 1.48498 * 109.47152 * 179.97438 * 24 22 20 27 27 H 1.48489 * 109.47422 * 300.00152 * 24 22 20 28 28 C 1.48556 * 104.22484 * 320.52190 * 15 14 13 29 29 H 1.09009 * 110.40801 * 280.70186 * 28 15 14 30 30 C 1.53001 * 110.41353 * 158.37945 * 28 15 14 31 31 H 1.08995 * 109.47366 * 59.99620 * 1 2 3 32 32 H 1.08997 * 109.47505 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46969 * 299.99771 * 1 2 3 34 34 H 1.08997 * 109.47408 * 59.99736 * 3 2 1 35 35 H 1.09004 * 109.47075 * 299.99764 * 3 2 1 36 36 H 1.08998 * 109.47162 * 299.99498 * 7 6 4 37 37 H 1.08995 * 109.47623 * 59.99863 * 7 6 4 38 38 H 1.08999 * 109.46700 * 179.97438 * 7 6 4 39 39 H 0.96995 * 120.00547 * 0.02562 * 10 8 4 40 40 H 1.09001 * 110.32406 * 359.97438 * 13 11 10 41 41 H 1.09005 * 110.32437 * 237.89870 * 13 11 10 42 42 H 1.08997 * 110.41324 * 142.57957 * 14 13 11 43 43 H 1.09005 * 110.40890 * 264.90265 * 14 13 11 44 44 H 1.09000 * 109.46692 * 53.85431 * 16 15 14 45 45 H 1.08998 * 109.47136 * 173.85190 * 16 15 14 46 46 H 0.97008 * 120.00509 * 359.97438 * 19 17 16 47 47 H 0.96993 * 120.00356 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.47000 * 61.45495 * 30 28 15 49 49 H 1.09004 * 109.46833 * 181.44883 * 30 28 15 50 50 H 1.08993 * 109.47210 * 301.44914 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5681 0.8410 6 8 3.9649 0.5794 -1.2219 7 6 4.0463 -0.8462 -1.1670 8 6 4.1481 2.5558 0.1231 9 8 4.8064 3.0104 -0.7883 10 7 3.9644 3.2770 1.2469 11 6 4.5605 4.6098 1.3675 12 1 5.5325 4.6367 0.8749 13 6 3.6223 5.6732 0.7602 14 6 3.2754 6.6200 1.9290 15 7 4.3987 6.4586 2.8876 16 6 4.0049 6.8856 4.2370 17 6 3.7456 8.3701 4.2384 18 8 3.9771 9.0272 3.2456 19 7 3.2565 8.9676 5.3430 20 6 3.0211 10.3182 5.3446 21 1 3.2272 10.9033 4.4605 22 6 2.5163 10.9341 6.4832 23 7 2.2650 10.2222 7.5588 24 14 2.1962 12.7745 6.4856 25 1 1.2062 13.1061 5.4295 26 1 1.6620 13.1823 7.8098 27 1 3.4652 13.4980 6.2191 28 6 4.6995 5.0042 2.8559 29 1 3.9816 4.4542 3.4645 30 6 6.1247 4.7432 3.3476 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6886 1.8464 0.8899 35 1 1.6887 1.8463 -0.8900 36 1 4.7574 -1.1401 -0.3951 37 1 3.0646 -1.2574 -0.9322 38 1 4.3786 -1.2285 -2.1322 39 1 3.4382 2.9133 1.9761 40 1 2.7186 5.2034 0.3720 41 1 4.1332 6.2208 -0.0318 42 1 3.2191 7.6508 1.5794 43 1 2.3334 6.3242 2.3911 44 1 3.0987 6.3581 4.5349 45 1 4.8064 6.6560 4.9391 46 1 3.0710 8.4420 6.1370 47 1 1.9123 10.6520 8.3535 48 1 6.2207 5.0812 4.3794 49 1 6.3377 3.6755 3.2938 50 1 6.8308 5.2866 2.7200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692390997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:20 Heat of formation + Delta-G solvation = -174.373187 kcal Electronic energy + Delta-G solvation = -30715.809456 eV Core-core repulsion = 26356.715324 eV Total energy + Delta-G solvation = -4359.094131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55792 -40.57959 -39.54509 -38.86322 -37.89905 -36.03240 -35.46744 -33.32607 -32.74618 -32.36532 -31.22763 -28.19189 -27.91202 -27.00701 -26.23581 -25.86581 -24.53447 -22.64363 -21.57919 -21.36484 -20.76335 -19.84818 -18.70744 -18.36378 -17.65310 -17.53996 -17.30787 -16.85532 -16.48233 -16.41664 -16.31251 -16.15449 -15.82435 -15.62649 -15.31007 -15.20623 -14.98545 -14.78136 -14.43426 -14.09117 -13.89036 -13.75094 -13.48248 -13.46035 -13.00058 -12.88851 -12.84689 -12.72474 -12.48907 -12.44525 -12.38463 -12.37376 -12.16989 -12.12773 -12.07359 -11.69218 -11.46509 -11.10140 -10.81041 -10.52433 -10.32837 -10.18049 -9.99377 -9.39292 -8.45649 -5.93763 1.36144 1.39710 1.41791 1.52115 1.66699 2.07406 2.29145 2.66580 2.76734 3.04857 3.21213 3.32671 3.40408 3.67727 3.77410 3.81108 3.93946 4.02519 4.15522 4.23185 4.26691 4.33925 4.41650 4.42374 4.43578 4.51833 4.55658 4.56504 4.61661 4.69880 4.70736 4.82798 4.86994 4.89262 4.95990 4.99741 5.04287 5.14908 5.33996 5.37908 5.42146 5.83078 5.94001 6.00118 6.05978 6.09810 6.44295 6.62420 7.10912 7.14695 7.58326 8.14863 8.71459 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.001994 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.680543 B =14037.491368 C =14654.485184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.048 3.952 4 C 0.079 3.921 5 H 0.122 0.878 6 O -0.389 6.389 7 C 0.027 3.973 8 C 0.521 3.479 9 O -0.559 6.559 10 N -0.701 5.701 11 C 0.156 3.844 12 H 0.086 0.914 13 C -0.125 4.125 14 C 0.041 3.959 15 N -0.502 5.502 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.574 5.574 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.059 3.941 29 H 0.085 0.915 30 C -0.135 4.135 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.418 0.582 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -26.185 -7.895 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.030 4.030 4 C 0.018 3.982 5 H 0.139 0.861 6 O -0.307 6.307 7 C -0.069 4.069 8 C 0.306 3.694 9 O -0.436 6.436 10 N -0.356 5.356 11 C 0.051 3.949 12 H 0.104 0.896 13 C -0.164 4.164 14 C -0.087 4.087 15 N -0.227 5.227 16 C -0.081 4.081 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.049 4.049 29 H 0.102 0.898 30 C -0.192 4.192 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.256 0.744 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.130 0.870 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.282 -25.114 -9.322 26.819 hybrid contribution -1.420 0.564 1.113 1.891 sum -2.702 -24.550 -8.209 26.027 Atomic orbital electron populations 1.22960 0.79118 1.04125 1.00903 1.87804 1.21623 1.26853 1.95620 1.22976 0.91463 0.86129 1.02416 1.21963 0.93214 0.92255 0.90780 0.86071 1.87983 1.88113 1.22067 1.32560 1.23081 1.01822 0.78616 1.03390 1.20497 0.80233 0.86525 0.82133 1.90744 1.40836 1.71731 1.40249 1.45881 1.54232 1.16942 1.18504 1.21569 0.96939 0.80959 0.95468 0.89630 1.22655 1.00059 0.96313 0.97360 1.23002 0.92272 1.00143 0.93269 1.65057 1.36303 1.15818 1.05504 1.21928 1.02046 0.91663 0.92512 1.20770 0.82097 0.90816 0.83548 1.90497 1.57373 1.67248 1.35124 1.41913 1.57367 1.08355 1.13534 1.19585 1.41911 0.84754 0.99855 0.90517 1.25985 0.96470 1.04452 0.94306 1.69652 1.44812 1.38136 1.03437 0.85030 0.78627 0.77212 0.77727 1.19808 1.19458 1.19899 1.22965 0.99545 0.87970 0.94468 0.89769 1.21728 0.93844 1.02158 1.01491 0.93875 0.88037 0.92627 0.89387 0.93012 0.92797 0.91849 0.88871 0.74433 0.89806 0.91857 0.92195 0.93276 0.90708 0.86951 0.76970 0.91329 0.91823 0.90033 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.30 8.83 -144.34 -1.27 -6.57 16 3 C 0.05 0.62 5.57 71.98 0.40 1.03 16 4 C 0.08 1.27 2.91 29.85 0.09 1.36 16 5 H 0.12 1.25 7.79 -2.38 -0.02 1.24 16 6 O -0.39 -8.39 9.88 -125.59 -1.24 -9.63 16 7 C 0.03 0.37 10.71 113.37 1.21 1.58 16 8 C 0.52 10.89 7.17 87.65 0.63 11.52 16 9 O -0.56 -17.67 16.21 15.98 0.26 -17.41 16 10 N -0.70 -10.96 4.94 -437.91 -2.17 -13.13 16 11 C 0.16 3.39 2.92 45.97 0.13 3.53 16 12 H 0.09 2.24 7.36 -2.39 -0.02 2.22 16 13 C -0.12 -3.19 6.77 31.49 0.21 -2.97 16 14 C 0.04 1.27 5.72 86.45 0.49 1.77 16 15 N -0.50 -15.39 4.77 -860.79 -4.11 -19.50 16 16 C 0.05 1.62 5.24 85.56 0.45 2.07 16 17 C 0.44 20.53 7.47 87.66 0.66 21.18 16 18 O -0.62 -33.96 14.39 -3.05 -0.04 -34.00 16 19 N -0.57 -28.88 5.29 -307.00 -1.62 -30.50 16 20 C -0.33 -18.66 9.68 84.04 0.81 -17.84 16 21 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.65 5.50 84.92 0.47 -0.19 16 23 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 24 Si 0.99 42.76 29.55 68.60 2.03 44.78 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 C 0.06 1.23 2.59 45.14 0.12 1.34 16 29 H 0.08 1.30 7.59 -2.38 -0.02 1.28 16 30 C -0.13 -2.57 9.35 71.98 0.67 -1.90 16 31 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.09 0.70 7.77 -2.39 -0.02 0.69 16 35 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 37 H 0.06 0.82 6.40 -2.39 -0.02 0.81 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.42 3.50 8.06 -92.71 -0.75 2.75 16 40 H 0.08 1.87 7.95 -2.39 -0.02 1.86 16 41 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.06 2.38 6.85 -2.39 -0.02 2.36 16 43 H 0.05 1.38 7.88 -2.38 -0.02 1.36 16 44 H 0.08 2.05 7.96 -2.39 -0.02 2.03 16 45 H 0.11 3.21 7.35 -2.39 -0.02 3.19 16 46 H 0.40 18.77 7.90 -92.70 -0.73 18.03 16 47 H 0.28 13.85 8.31 -92.71 -0.77 13.07 16 48 H 0.06 1.20 7.40 -2.39 -0.02 1.18 16 49 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.05 1.16 8.12 -2.39 -0.02 1.14 16 Total: -1.00 -77.53 407.79 -0.81 -78.34 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.52 Total: 32.28 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 7.59 Total: 23.93 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -7.62 Total: -111.72 kcal Atomic # 8 Polarization: -65.32 SS G_CDS: -2.30 Total: -67.62 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -77.53 -0.81 -78.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692390997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.032 kcal (2) G-P(sol) polarization free energy of solvation -77.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds