Wall clock time and date at job start Wed Apr 1 2020 02:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47249 * 2 1 4 4 C 1.42895 * 114.00140 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47081 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47303 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00109 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00137 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47035 * 179.97438 * 9 8 6 11 11 O 1.42900 * 110.62734 * 300.69830 * 10 9 8 12 12 C 1.55142 * 110.70689 * 63.79950 * 10 9 8 13 13 C 1.55111 * 101.55819 * 153.90630 * 12 10 9 14 14 N 1.47846 * 104.90839 * 323.16266 * 13 12 10 15 15 C 1.46895 * 111.00482 * 146.23721 * 14 13 12 16 16 C 1.50703 * 109.47171 * 69.15579 * 15 14 13 17 17 O 1.21292 * 119.99336 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00015 * 179.97438 * 16 15 14 19 19 C 1.37107 * 119.99977 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99814 * 0.02562 * 19 18 16 21 21 C 1.38944 * 119.99865 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00564 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99725 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47115 * 89.99743 * 23 21 19 25 25 H 1.48506 * 109.47315 * 209.99657 * 23 21 19 26 26 H 1.48498 * 109.47211 * 330.00007 * 23 21 19 27 27 C 1.47446 * 108.56528 * 23.96977 * 14 13 12 28 28 H 1.08997 * 109.47174 * 300.00281 * 1 2 3 29 29 H 1.09005 * 109.46809 * 60.00468 * 1 2 3 30 30 H 1.08997 * 109.46816 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47676 * 239.99762 * 2 1 3 32 32 H 1.09005 * 109.46809 * 119.99532 * 2 1 3 33 33 H 1.09000 * 109.46843 * 60.00013 * 4 3 2 34 34 H 1.08996 * 109.47554 * 300.00239 * 4 3 2 35 35 H 1.09000 * 109.46986 * 60.00450 * 5 4 3 36 36 H 1.08996 * 109.47407 * 300.00679 * 5 4 3 37 37 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 39 39 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 40 40 H 0.96704 * 113.99876 * 59.30287 * 11 10 9 41 41 H 1.08996 * 110.99582 * 272.13212 * 12 10 9 42 42 H 1.09003 * 110.98660 * 35.94696 * 12 10 9 43 43 H 1.08994 * 110.43104 * 204.24362 * 13 12 10 44 44 H 1.09007 * 110.21450 * 81.97193 * 13 12 10 45 45 H 1.09002 * 109.47678 * 189.16165 * 15 14 13 46 46 H 1.09002 * 109.46810 * 309.15897 * 15 14 13 47 47 H 0.97000 * 120.00264 * 0.02562 * 18 16 15 48 48 H 0.96999 * 120.00469 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.89138 * 239.60618 * 27 14 13 50 50 H 1.09000 * 109.89032 * 118.41587 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 5.3276 3.0575 -0.0001 7 8 6.0151 2.0583 -0.0001 8 7 5.9072 4.2742 -0.0002 9 6 7.3677 4.3899 -0.0008 10 6 7.7622 5.8682 -0.0013 11 8 7.2319 6.5303 -1.1513 12 6 7.2851 6.5638 1.3007 13 6 8.3039 7.7270 1.4230 14 7 9.5856 7.1611 0.9510 15 6 10.3889 8.1797 0.2618 16 6 10.8705 9.2002 1.2606 17 8 10.5741 9.0894 2.4315 18 7 11.6313 10.2353 0.8530 19 6 12.0700 11.1634 1.7618 20 1 11.8061 11.0648 2.8044 21 6 12.8539 12.2308 1.3415 22 7 13.1754 12.3505 0.0730 23 14 13.4509 13.4957 2.5797 24 1 14.7635 13.0699 3.1286 25 1 13.5982 14.8129 1.9099 26 1 12.4657 13.6098 3.6849 27 6 9.2963 6.0236 0.0586 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8340 0.9764 -0.8892 34 1 3.8333 0.9767 0.8907 35 1 3.4222 3.4224 0.8894 36 1 3.4229 3.4215 -0.8905 37 1 5.3574 5.0734 -0.0006 38 1 7.7708 3.9063 0.8890 39 1 7.7701 3.9065 -0.8910 40 1 6.2677 6.4941 -1.2163 41 1 6.2684 6.9413 1.1918 42 1 7.3601 5.8893 2.1537 43 1 8.3907 8.0493 2.4606 44 1 8.0012 8.5610 0.7897 45 1 11.2465 7.7050 -0.2150 46 1 9.7788 8.6723 -0.4955 47 1 11.8686 10.3236 -0.0834 48 1 13.7230 13.0954 -0.2204 49 1 9.7457 5.1147 0.4588 50 1 9.6878 6.2254 -0.9384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699892816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:05 Heat of formation + Delta-G solvation = -164.989850 kcal Electronic energy + Delta-G solvation = -29573.464374 eV Core-core repulsion = 25214.777134 eV Total energy + Delta-G solvation = -4358.687239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57173 -39.57882 -38.37656 -37.97568 -35.94287 -34.63749 -33.84037 -33.02719 -31.56320 -31.12276 -30.64709 -29.41074 -27.28715 -25.49178 -24.11921 -23.52344 -23.23916 -21.51612 -20.81031 -20.40581 -19.19976 -18.14863 -17.86185 -17.29559 -16.94353 -16.48941 -16.26210 -15.93400 -15.77866 -15.41780 -14.95797 -14.77762 -14.58184 -14.41619 -14.36315 -13.93337 -13.83476 -13.56544 -13.32065 -12.93764 -12.85027 -12.75300 -12.56215 -12.36562 -12.24229 -12.01622 -11.60532 -11.57217 -11.52542 -11.48521 -11.44890 -11.19922 -11.06057 -10.81466 -10.38150 -10.31829 -10.20351 -10.16421 -10.06915 -9.53491 -9.46861 -8.44801 -7.95798 -7.89210 -6.39021 -3.79802 2.20160 2.48942 3.19414 3.27734 3.33335 3.35131 3.75447 3.93784 3.99923 4.19908 4.25266 4.31759 4.38283 4.51761 4.57500 4.59008 4.66628 4.79790 4.90761 5.00847 5.08740 5.16386 5.18980 5.26637 5.30458 5.31604 5.33132 5.43253 5.44248 5.45329 5.58540 5.63043 5.64032 5.82317 5.86982 5.91795 5.94220 6.09164 6.31568 6.39952 6.70083 6.95563 7.17828 7.21678 7.29582 7.57470 7.74805 8.09010 8.64985 9.20968 9.57785 10.09818 10.78860 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.040918 B = 0.001477 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.125086 B =18950.139818 C =19135.535409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.140 4.140 6 C 0.519 3.481 7 O -0.538 6.538 8 N -0.728 5.728 9 C 0.103 3.897 10 C 0.097 3.903 11 O -0.544 6.544 12 C -0.155 4.155 13 C 0.058 3.942 14 N -0.500 5.500 15 C 0.040 3.960 16 C 0.445 3.555 17 O -0.579 6.579 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.057 3.943 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.399 0.601 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.370 0.630 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.094 0.906 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.139 -20.274 -4.688 30.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.180 4.180 6 C 0.306 3.694 7 O -0.415 6.415 8 N -0.381 5.381 9 C -0.021 4.021 10 C 0.055 3.945 11 O -0.350 6.350 12 C -0.193 4.193 13 C -0.069 4.069 14 N -0.224 5.224 15 C -0.091 4.091 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.203 5.203 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.071 4.071 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.233 0.767 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.217 0.783 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.885 -20.800 -3.673 29.704 hybrid contribution -0.572 1.153 -0.706 1.468 sum -21.458 -19.646 -4.379 29.421 Atomic orbital electron populations 1.21752 0.93602 1.02361 1.03177 1.22463 0.95564 0.83405 1.00352 1.87803 1.21005 1.26947 1.95598 1.22091 0.80828 0.95171 1.01836 1.21472 0.92140 0.98522 1.05873 1.20394 0.90161 0.83123 0.75743 1.90744 1.65378 1.36297 1.49074 1.45904 1.07857 1.08282 1.76048 1.22012 0.79860 0.96499 1.03751 1.22818 0.96275 0.89426 0.85966 1.86675 1.25437 1.78182 1.44672 1.23481 0.99414 0.99007 0.97426 1.23007 0.86400 0.94812 1.02702 1.63366 1.16810 1.07582 1.34663 1.22129 0.98092 0.93510 0.95392 1.19730 0.84069 0.83844 0.89320 1.90500 1.60812 1.76708 1.18218 1.41856 1.45310 1.22092 1.11001 1.19693 1.28432 1.02230 0.92427 0.87959 1.25242 0.97323 0.98631 0.96724 1.69610 1.38107 1.32223 1.14463 0.85872 0.79163 0.79333 0.79990 1.20416 1.20971 1.19464 1.22851 0.90332 0.96610 0.97333 0.91797 0.91813 0.91012 0.93250 0.93228 0.92388 0.92343 0.87809 0.87860 0.76689 0.89806 0.90329 0.78273 0.90708 0.89560 0.88627 0.93587 0.89380 0.92975 0.77514 0.91918 0.88823 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.28 37.16 0.38 -0.33 16 2 C 0.06 0.36 6.66 37.16 0.25 0.60 16 3 O -0.39 -3.18 10.34 -35.23 -0.36 -3.54 16 4 C 0.08 0.59 5.23 37.16 0.19 0.78 16 5 C -0.14 -0.84 6.07 -27.88 -0.17 -1.01 16 6 C 0.52 4.42 7.83 -10.99 -0.09 4.34 16 7 O -0.54 -6.79 15.98 5.55 0.09 -6.70 16 8 N -0.73 -4.95 5.17 -60.29 -0.31 -5.26 16 9 C 0.10 0.91 4.72 -4.04 -0.02 0.89 16 10 C 0.10 0.96 0.92 -88.80 -0.08 0.88 16 11 O -0.54 -5.39 13.09 -35.23 -0.46 -5.86 16 12 C -0.15 -1.61 5.83 -24.48 -0.14 -1.75 16 13 C 0.06 0.89 5.74 -2.19 -0.01 0.88 16 14 N -0.50 -8.24 4.86 -232.56 -1.13 -9.37 16 15 C 0.04 0.74 5.05 -4.98 -0.03 0.71 16 16 C 0.45 10.60 7.58 -10.99 -0.08 10.52 16 17 O -0.58 -15.62 14.61 5.55 0.08 -15.54 16 18 N -0.57 -14.47 5.29 -10.96 -0.06 -14.52 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 23 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.06 0.72 6.23 -2.84 -0.02 0.70 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 34 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.40 1.62 7.31 -40.82 -0.30 1.33 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.37 2.17 7.93 45.56 0.36 2.53 16 41 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 42 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 43 H 0.10 1.72 7.38 -51.93 -0.38 1.33 16 44 H 0.05 0.74 7.62 -51.93 -0.40 0.35 16 45 H 0.09 1.46 8.03 -51.93 -0.42 1.05 16 46 H 0.05 0.90 7.85 -51.93 -0.41 0.49 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.09 1.07 7.82 -51.93 -0.41 0.67 16 50 H 0.07 0.89 7.47 -51.93 -0.39 0.50 16 LS Contribution 411.00 15.07 6.19 6.19 Total: -1.00 -35.09 411.00 -7.97 -43.06 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.65 Total: 10.20 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -0.05 Total: 9.21 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.78 Total: -53.14 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.66 Total: -31.64 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.09 -7.97 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699892816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.932 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds