Wall clock time and date at job start Wed Apr 1 2020 02:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47249 * 2 1 4 4 C 1.42895 * 114.00140 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47081 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47303 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00109 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00137 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47035 * 179.97438 * 9 8 6 11 11 O 1.42900 * 110.62734 * 300.69830 * 10 9 8 12 12 C 1.55142 * 110.70689 * 63.79950 * 10 9 8 13 13 C 1.55111 * 101.55819 * 153.90630 * 12 10 9 14 14 N 1.47846 * 104.90839 * 323.16266 * 13 12 10 15 15 C 1.46895 * 111.00482 * 146.23721 * 14 13 12 16 16 C 1.50703 * 109.47171 * 69.15579 * 15 14 13 17 17 O 1.21292 * 119.99336 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00015 * 179.97438 * 16 15 14 19 19 C 1.37107 * 119.99977 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99814 * 0.02562 * 19 18 16 21 21 C 1.38944 * 119.99865 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00564 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99725 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47115 * 89.99743 * 23 21 19 25 25 H 1.48506 * 109.47315 * 209.99657 * 23 21 19 26 26 H 1.48498 * 109.47211 * 330.00007 * 23 21 19 27 27 C 1.47446 * 108.56528 * 23.96977 * 14 13 12 28 28 H 1.08997 * 109.47174 * 300.00281 * 1 2 3 29 29 H 1.09005 * 109.46809 * 60.00468 * 1 2 3 30 30 H 1.08997 * 109.46816 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47676 * 239.99762 * 2 1 3 32 32 H 1.09005 * 109.46809 * 119.99532 * 2 1 3 33 33 H 1.09000 * 109.46843 * 60.00013 * 4 3 2 34 34 H 1.08996 * 109.47554 * 300.00239 * 4 3 2 35 35 H 1.09000 * 109.46986 * 60.00450 * 5 4 3 36 36 H 1.08996 * 109.47407 * 300.00679 * 5 4 3 37 37 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 39 39 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 40 40 H 0.96704 * 113.99876 * 59.30287 * 11 10 9 41 41 H 1.08996 * 110.99582 * 272.13212 * 12 10 9 42 42 H 1.09003 * 110.98660 * 35.94696 * 12 10 9 43 43 H 1.08994 * 110.43104 * 204.24362 * 13 12 10 44 44 H 1.09007 * 110.21450 * 81.97193 * 13 12 10 45 45 H 1.09002 * 109.47678 * 189.16165 * 15 14 13 46 46 H 1.09002 * 109.46810 * 309.15897 * 15 14 13 47 47 H 0.97000 * 120.00264 * 0.02562 * 18 16 15 48 48 H 0.96999 * 120.00469 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.89138 * 239.60618 * 27 14 13 50 50 H 1.09000 * 109.89032 * 118.41587 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 5.3276 3.0575 -0.0001 7 8 6.0151 2.0583 -0.0001 8 7 5.9072 4.2742 -0.0002 9 6 7.3677 4.3899 -0.0008 10 6 7.7622 5.8682 -0.0013 11 8 7.2319 6.5303 -1.1513 12 6 7.2851 6.5638 1.3007 13 6 8.3039 7.7270 1.4230 14 7 9.5856 7.1611 0.9510 15 6 10.3889 8.1797 0.2618 16 6 10.8705 9.2002 1.2606 17 8 10.5741 9.0894 2.4315 18 7 11.6313 10.2353 0.8530 19 6 12.0700 11.1634 1.7618 20 1 11.8061 11.0648 2.8044 21 6 12.8539 12.2308 1.3415 22 7 13.1754 12.3505 0.0730 23 14 13.4509 13.4957 2.5797 24 1 14.7635 13.0699 3.1286 25 1 13.5982 14.8129 1.9099 26 1 12.4657 13.6098 3.6849 27 6 9.2963 6.0236 0.0586 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8340 0.9764 -0.8892 34 1 3.8333 0.9767 0.8907 35 1 3.4222 3.4224 0.8894 36 1 3.4229 3.4215 -0.8905 37 1 5.3574 5.0734 -0.0006 38 1 7.7708 3.9063 0.8890 39 1 7.7701 3.9065 -0.8910 40 1 6.2677 6.4941 -1.2163 41 1 6.2684 6.9413 1.1918 42 1 7.3601 5.8893 2.1537 43 1 8.3907 8.0493 2.4606 44 1 8.0012 8.5610 0.7897 45 1 11.2465 7.7050 -0.2150 46 1 9.7788 8.6723 -0.4955 47 1 11.8686 10.3236 -0.0834 48 1 13.7230 13.0954 -0.2204 49 1 9.7457 5.1147 0.4588 50 1 9.6878 6.2254 -0.9384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699892816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:04 Heat of formation + Delta-G solvation = -195.752690 kcal Electronic energy + Delta-G solvation = -29574.798351 eV Core-core repulsion = 25214.777134 eV Total energy + Delta-G solvation = -4360.021216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.40180 -40.59185 -39.69029 -38.88321 -37.07449 -35.85701 -35.35465 -33.55219 -33.30649 -32.41032 -31.29127 -30.33046 -28.64566 -26.79982 -25.61335 -24.21610 -23.68238 -22.62599 -21.57978 -21.27353 -20.98839 -19.88777 -18.78483 -18.17725 -17.62246 -17.48353 -17.16409 -17.03248 -16.69233 -16.41872 -16.27728 -16.07963 -15.73765 -15.66423 -15.25332 -15.12126 -14.83199 -14.50855 -14.41552 -14.28029 -13.70775 -13.67974 -13.53812 -13.29972 -13.21616 -13.01238 -12.94534 -12.70485 -12.67656 -12.48524 -12.40239 -12.24447 -12.11279 -12.03444 -12.01494 -11.89862 -11.48953 -11.07819 -10.98231 -10.61259 -10.30867 -10.20468 -10.00290 -9.26976 -8.45785 -5.94695 1.38274 1.41709 1.54517 1.56051 1.88776 2.06053 2.28804 2.74752 2.84437 3.04330 3.20867 3.35581 3.44674 3.53338 3.71613 3.81216 4.03269 4.09598 4.17327 4.24287 4.26107 4.31055 4.37779 4.40473 4.48344 4.50212 4.50584 4.58132 4.67692 4.71772 4.76978 4.82302 4.83509 4.92485 4.94621 5.04179 5.07748 5.11950 5.27818 5.29597 5.41291 5.85070 5.99684 6.09095 6.18030 6.41549 6.61283 6.71362 7.13558 7.15395 7.56884 8.12723 8.71792 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.040918 B = 0.001477 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.125086 B =18950.139818 C =19135.535409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.405 6.405 4 C 0.077 3.923 5 C -0.131 4.131 6 C 0.520 3.480 7 O -0.584 6.584 8 N -0.713 5.713 9 C 0.113 3.887 10 C 0.116 3.884 11 O -0.557 6.557 12 C -0.140 4.140 13 C 0.054 3.946 14 N -0.522 5.522 15 C 0.054 3.946 16 C 0.442 3.558 17 O -0.615 6.615 18 N -0.575 5.575 19 C -0.333 4.333 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.052 3.948 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.415 0.585 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.390 0.610 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.104 0.896 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.615 -20.501 -5.425 31.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.325 6.325 4 C 0.000 4.000 5 C -0.170 4.170 6 C 0.308 3.692 7 O -0.464 6.464 8 N -0.367 5.367 9 C -0.011 4.011 10 C 0.074 3.926 11 O -0.365 6.365 12 C -0.179 4.179 13 C -0.073 4.073 14 N -0.246 5.246 15 C -0.077 4.077 16 C 0.229 3.771 17 O -0.501 6.501 18 N -0.212 5.212 19 C -0.463 4.463 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.076 4.076 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.253 0.747 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.240 0.760 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.125 0.875 46 H 0.083 0.917 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.122 0.878 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.400 -21.012 -4.440 31.032 hybrid contribution -0.141 1.183 -0.488 1.288 sum -22.541 -19.829 -4.929 30.423 Atomic orbital electron populations 1.21762 0.92558 1.03389 1.02899 1.22657 0.96476 0.82781 1.00753 1.87781 1.21041 1.28068 1.95622 1.22070 0.80716 0.96292 1.00943 1.21438 0.90105 0.97709 1.07770 1.20812 0.91034 0.82714 0.74664 1.90733 1.66501 1.37873 1.51275 1.45734 1.07172 1.08680 1.75126 1.21766 0.80975 0.95237 1.03172 1.22462 0.94459 0.89928 0.85781 1.86642 1.27416 1.78163 1.44279 1.23429 0.99583 0.97001 0.97849 1.22918 0.87636 0.96550 1.00239 1.63269 1.17508 1.07882 1.35951 1.21957 0.99256 0.92706 0.93783 1.20737 0.82545 0.83906 0.89903 1.90472 1.61742 1.77543 1.20302 1.41928 1.46008 1.22508 1.10806 1.19666 1.30419 1.04120 0.92070 0.90314 1.26025 0.96707 0.99825 0.98626 1.69673 1.38079 1.32857 1.15637 0.84934 0.78534 0.77212 0.77683 1.19682 1.19507 1.19729 1.22933 0.92717 0.95253 0.96724 0.92084 0.92013 0.89387 0.92826 0.92910 0.93290 0.93395 0.85923 0.85730 0.74716 0.90499 0.90971 0.75984 0.87508 0.89216 0.92178 0.94701 0.87548 0.91741 0.77129 0.91324 0.87772 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 71.98 0.74 -0.48 16 2 C 0.05 0.56 6.66 71.98 0.48 1.04 16 3 O -0.40 -6.03 10.34 -148.98 -1.54 -7.57 16 4 C 0.08 1.09 5.23 71.98 0.38 1.46 16 5 C -0.13 -1.25 6.07 29.85 0.18 -1.06 16 6 C 0.52 7.83 7.83 87.66 0.69 8.52 16 7 O -0.58 -14.29 15.98 -3.04 -0.05 -14.34 16 8 N -0.71 -7.70 5.17 -463.04 -2.39 -10.09 16 9 C 0.11 1.75 4.72 86.38 0.41 2.15 16 10 C 0.12 2.02 0.92 -9.61 -0.01 2.01 16 11 O -0.56 -9.35 13.09 -148.98 -1.95 -11.30 16 12 C -0.14 -2.61 5.83 32.05 0.19 -2.43 16 13 C 0.05 1.66 5.74 86.84 0.50 2.15 16 14 N -0.52 -16.98 4.86 -889.67 -4.33 -21.31 16 15 C 0.05 1.97 5.05 85.56 0.43 2.41 16 16 C 0.44 21.57 7.58 87.66 0.66 22.23 16 17 O -0.61 -34.45 14.61 -3.07 -0.04 -34.49 16 18 N -0.57 -30.14 5.29 -306.99 -1.62 -31.77 16 19 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 23 Si 0.99 43.28 29.55 68.60 2.03 45.30 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.05 1.22 6.23 86.64 0.54 1.76 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.05 0.76 8.10 -2.39 -0.02 0.75 16 34 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 35 H 0.12 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.42 1.76 7.31 -92.71 -0.68 1.08 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.39 3.06 7.93 -74.05 -0.59 2.47 16 41 H 0.11 1.31 8.13 -2.39 -0.02 1.29 16 42 H 0.09 1.66 8.05 -2.39 -0.02 1.64 16 43 H 0.06 2.25 7.38 -2.39 -0.02 2.23 16 44 H 0.03 1.12 7.62 -2.38 -0.02 1.10 16 45 H 0.11 3.44 8.03 -2.39 -0.02 3.43 16 46 H 0.06 2.18 7.85 -2.39 -0.02 2.17 16 47 H 0.40 19.77 7.90 -92.71 -0.73 19.03 16 48 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 49 H 0.10 2.23 7.82 -2.39 -0.02 2.21 16 50 H 0.07 1.71 7.47 -2.39 -0.02 1.69 16 Total: -1.00 -78.11 411.00 -4.18 -82.29 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -1.03 Total: 32.06 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 6.46 Total: 21.21 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -8.06 Total: -113.16 kcal Atomic # 8 Polarization: -64.12 SS G_CDS: -3.58 Total: -67.71 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -78.11 -4.18 -82.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699892816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.461 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds