Wall clock time and date at job start Wed Apr 1 2020 02:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47068 * 2 1 4 4 C 1.42895 * 114.00370 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47503 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47212 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46983 * 180.02562 * 9 8 6 11 11 O 1.42904 * 110.27476 * 62.91279 * 10 9 8 12 12 C 1.54600 * 110.31062 * 300.71789 * 10 9 8 13 13 C 1.54931 * 102.92295 * 219.12570 * 12 10 9 14 14 N 1.48538 * 103.22721 * 37.41476 * 13 12 10 15 15 C 1.46908 * 110.99634 * 200.27880 * 14 13 12 16 16 C 1.50690 * 109.47114 * 307.39182 * 15 14 13 17 17 O 1.21287 * 120.00492 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99757 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99772 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00596 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00093 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99724 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00457 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46839 * 60.00068 * 23 21 19 25 25 H 1.48498 * 109.47349 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47222 * 300.00638 * 23 21 19 27 27 C 1.47903 * 105.81880 * 320.78810 * 14 13 12 28 28 H 1.08999 * 109.47732 * 300.00016 * 1 2 3 29 29 H 1.09001 * 109.46894 * 60.00423 * 1 2 3 30 30 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47732 * 239.99984 * 2 1 3 32 32 H 1.09001 * 109.46894 * 119.99577 * 2 1 3 33 33 H 1.09002 * 109.46880 * 59.99856 * 4 3 2 34 34 H 1.08998 * 109.47064 * 300.00681 * 4 3 2 35 35 H 1.09002 * 109.47153 * 60.00043 * 5 4 3 36 36 H 1.09001 * 109.46832 * 300.00234 * 5 4 3 37 37 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.47487 * 300.00114 * 9 8 6 39 39 H 1.09002 * 109.47182 * 60.00342 * 9 8 6 40 40 H 0.96698 * 113.99494 * 300.69852 * 11 10 9 41 41 H 1.09000 * 110.72260 * 337.48364 * 12 10 9 42 42 H 1.08995 * 110.72301 * 100.76402 * 12 10 9 43 43 H 1.08995 * 110.66943 * 278.97420 * 13 12 10 44 44 H 1.09007 * 110.81152 * 155.91194 * 13 12 10 45 45 H 1.09001 * 109.46905 * 67.39580 * 15 14 13 46 46 H 1.08997 * 109.46546 * 187.39159 * 15 14 13 47 47 H 0.97000 * 120.00106 * 359.97438 * 18 16 15 48 48 H 0.97002 * 120.00284 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.91683 * 265.98243 * 27 14 13 50 50 H 1.09000 * 109.91567 * 144.68262 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 6 5.3276 3.0575 -0.0001 7 8 6.0150 2.0583 -0.0001 8 7 5.9072 4.2743 -0.0012 9 6 7.3675 4.3900 -0.0018 10 6 7.7620 5.8682 -0.0024 11 8 7.3004 6.5044 1.1911 12 6 7.1844 6.5773 -1.2488 13 6 8.3303 7.5329 -1.6661 14 7 9.5538 6.7364 -1.3921 15 6 10.7307 7.6063 -1.2649 16 6 10.8254 8.5029 -2.4724 17 8 9.9941 8.4254 -3.3521 18 7 11.8340 9.3911 -2.5747 19 6 11.9199 10.2072 -3.6730 20 1 11.1791 10.1387 -4.4560 21 6 12.9599 11.1225 -3.7788 22 7 13.8610 11.2063 -2.8259 23 14 13.0774 12.2340 -5.2755 24 1 11.8533 13.0696 -5.3688 25 1 14.2675 13.1129 -5.1473 26 1 13.2043 11.4035 -6.5001 27 6 9.2899 6.0137 -0.1289 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8339 0.9765 -0.8892 34 1 3.8332 0.9768 0.8907 35 1 3.4221 3.4225 0.8894 36 1 3.4229 3.4214 -0.8906 37 1 5.3573 5.0734 -0.0016 38 1 7.7707 3.9071 0.8884 39 1 7.7700 3.9058 -0.8916 40 1 6.3421 6.4634 1.3131 41 1 6.9753 5.8572 -2.0400 42 1 6.2873 7.1402 -0.9912 43 1 8.3166 8.4381 -1.0591 44 1 8.2617 7.7805 -2.7254 45 1 10.6366 8.2158 -0.3662 46 1 11.6295 6.9936 -1.1959 47 1 12.4987 9.4534 -1.8710 48 1 14.5873 11.8450 -2.8999 49 1 9.6796 6.5846 0.7139 50 1 9.7553 5.0286 -0.1605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699892817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:08 Heat of formation + Delta-G solvation = -162.789751 kcal Electronic energy + Delta-G solvation = -29662.798659 eV Core-core repulsion = 25304.206823 eV Total energy + Delta-G solvation = -4358.591836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53059 -39.54926 -38.37398 -38.04798 -35.93103 -34.60815 -33.91244 -32.98414 -31.57093 -31.14947 -30.61663 -29.27259 -27.26091 -25.46284 -24.11222 -23.46964 -23.20904 -21.60722 -20.68284 -20.30536 -19.28705 -18.08999 -17.88872 -17.21105 -16.90445 -16.44011 -16.22736 -15.93411 -15.74445 -15.39954 -15.07279 -14.68273 -14.58316 -14.40609 -14.32591 -13.94594 -13.79512 -13.52739 -13.31925 -13.05073 -12.83633 -12.76744 -12.45912 -12.29103 -12.20728 -11.88856 -11.70353 -11.55961 -11.53941 -11.49118 -11.21764 -11.18308 -10.98709 -10.87188 -10.46181 -10.26162 -10.24006 -10.08845 -10.03487 -9.50205 -9.46600 -8.42550 -8.05734 -7.94098 -6.43995 -3.85089 2.26058 2.55019 3.18316 3.24581 3.28548 3.39684 3.72450 3.86690 4.13043 4.23246 4.30308 4.37632 4.49261 4.55628 4.61247 4.62229 4.68379 4.83100 4.93756 5.04280 5.05747 5.21963 5.22714 5.23785 5.34985 5.36662 5.38182 5.47087 5.51613 5.56022 5.66258 5.66717 5.70710 5.76468 5.90494 5.93721 6.02330 6.19828 6.24028 6.58786 6.73518 7.02181 7.10282 7.21141 7.35703 7.52779 7.80985 8.02894 8.58612 9.15050 9.50806 10.02210 10.73501 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.001547 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.789907 B =18091.593949 C =18559.517166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.140 4.140 6 C 0.519 3.481 7 O -0.539 6.539 8 N -0.728 5.728 9 C 0.102 3.898 10 C 0.111 3.889 11 O -0.550 6.550 12 C -0.153 4.153 13 C 0.042 3.958 14 N -0.492 5.492 15 C 0.036 3.964 16 C 0.442 3.558 17 O -0.582 6.582 18 N -0.560 5.560 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.048 3.952 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.399 0.601 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.371 0.629 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.121 0.879 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.393 0.607 48 H 0.272 0.728 49 H 0.062 0.938 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.101 -16.729 10.253 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.180 4.180 6 C 0.305 3.695 7 O -0.415 6.415 8 N -0.381 5.381 9 C -0.022 4.022 10 C 0.069 3.931 11 O -0.355 6.355 12 C -0.191 4.191 13 C -0.085 4.085 14 N -0.217 5.217 15 C -0.096 4.096 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.196 5.196 19 C -0.431 4.431 20 H 0.121 0.879 21 C -0.178 4.178 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.081 4.081 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.233 0.767 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.218 0.782 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.139 0.861 45 H 0.069 0.931 46 H 0.110 0.890 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.312 -17.451 9.326 28.356 hybrid contribution -0.143 1.314 0.412 1.384 sum -20.455 -16.137 9.739 27.814 Atomic orbital electron populations 1.21752 0.93622 1.02344 1.03167 1.22460 0.95547 0.83433 1.00350 1.87801 1.21040 1.26920 1.95599 1.22093 0.80786 0.95210 1.01838 1.21473 0.92196 0.98480 1.05851 1.20388 0.90136 0.83157 0.75787 1.90741 1.65385 1.36304 1.49102 1.45921 1.07915 1.08265 1.75979 1.22117 0.79746 0.96585 1.03757 1.22340 0.95861 0.89704 0.85148 1.86654 1.27038 1.79486 1.42334 1.23306 0.98961 0.99615 0.97220 1.23438 0.86794 0.93502 1.04806 1.64733 1.03227 1.25696 1.28012 1.22122 0.94861 0.95219 0.97404 1.19667 0.84647 0.84093 0.88861 1.90426 1.41940 1.71908 1.42443 1.41837 1.24176 1.32383 1.21183 1.19657 1.10716 1.13569 0.99129 0.87914 1.25268 0.95519 0.98322 0.98704 1.69606 1.14250 1.37118 1.33177 0.85913 0.77647 0.79541 0.81086 1.19922 1.20954 1.19854 1.22837 0.91479 1.00912 0.92872 0.91831 0.91792 0.91027 0.93217 0.93272 0.92325 0.92402 0.87906 0.87796 0.76661 0.90467 0.89601 0.78185 0.89793 0.90782 0.94215 0.86117 0.93076 0.89025 0.77406 0.91764 0.91969 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.38 16 2 C 0.06 0.38 6.66 37.16 0.25 0.62 16 3 O -0.39 -3.32 10.34 -35.23 -0.36 -3.69 16 4 C 0.08 0.62 5.23 37.16 0.19 0.82 16 5 C -0.14 -0.91 6.07 -27.88 -0.17 -1.08 16 6 C 0.52 4.75 7.83 -10.98 -0.09 4.67 16 7 O -0.54 -7.15 15.98 5.56 0.09 -7.06 16 8 N -0.73 -5.48 5.11 -60.30 -0.31 -5.79 16 9 C 0.10 0.99 4.50 -4.04 -0.02 0.97 16 10 C 0.11 1.18 1.05 -89.26 -0.09 1.08 16 11 O -0.55 -5.59 12.95 -35.23 -0.46 -6.04 16 12 C -0.15 -1.73 5.64 -24.87 -0.14 -1.87 16 13 C 0.04 0.68 5.31 -1.90 -0.01 0.67 16 14 N -0.49 -8.11 5.26 -231.89 -1.22 -9.33 16 15 C 0.04 0.64 5.52 -4.98 -0.03 0.61 16 16 C 0.44 10.27 7.49 -10.99 -0.08 10.19 16 17 O -0.58 -15.12 13.09 5.55 0.07 -15.05 16 18 N -0.56 -14.06 5.29 -10.96 -0.06 -14.11 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 21 C 0.02 0.63 5.50 -17.46 -0.10 0.54 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 23 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.05 0.62 6.18 -2.75 -0.02 0.60 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 1.90 7.33 -40.82 -0.30 1.60 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.37 2.25 8.14 45.56 0.37 2.63 16 41 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 42 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 43 H 0.04 0.68 8.02 -51.93 -0.42 0.26 16 44 H 0.12 2.35 5.96 -51.93 -0.31 2.05 16 45 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 46 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.06 0.83 7.39 -51.93 -0.38 0.45 16 50 H 0.09 1.07 7.68 -51.93 -0.40 0.67 16 LS Contribution 408.14 15.07 6.15 6.15 Total: -1.00 -33.87 408.14 -8.03 -41.90 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.57 Total: 11.79 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.06 Total: 8.99 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.86 Total: -52.85 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.66 Total: -31.83 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.87 -8.03 -41.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699892817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.893 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds