Wall clock time and date at job start Wed Apr 1 2020 02:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47068 * 2 1 4 4 C 1.42895 * 114.00370 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47503 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47212 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46983 * 180.02562 * 9 8 6 11 11 O 1.42904 * 110.27476 * 62.91279 * 10 9 8 12 12 C 1.54600 * 110.31062 * 300.71789 * 10 9 8 13 13 C 1.54931 * 102.92295 * 219.12570 * 12 10 9 14 14 N 1.48538 * 103.22721 * 37.41476 * 13 12 10 15 15 C 1.46908 * 110.99634 * 200.27880 * 14 13 12 16 16 C 1.50690 * 109.47114 * 307.39182 * 15 14 13 17 17 O 1.21287 * 120.00492 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99757 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99772 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00596 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00093 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99724 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00457 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46839 * 60.00068 * 23 21 19 25 25 H 1.48498 * 109.47349 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47222 * 300.00638 * 23 21 19 27 27 C 1.47903 * 105.81880 * 320.78810 * 14 13 12 28 28 H 1.08999 * 109.47732 * 300.00016 * 1 2 3 29 29 H 1.09001 * 109.46894 * 60.00423 * 1 2 3 30 30 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47732 * 239.99984 * 2 1 3 32 32 H 1.09001 * 109.46894 * 119.99577 * 2 1 3 33 33 H 1.09002 * 109.46880 * 59.99856 * 4 3 2 34 34 H 1.08998 * 109.47064 * 300.00681 * 4 3 2 35 35 H 1.09002 * 109.47153 * 60.00043 * 5 4 3 36 36 H 1.09001 * 109.46832 * 300.00234 * 5 4 3 37 37 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.47487 * 300.00114 * 9 8 6 39 39 H 1.09002 * 109.47182 * 60.00342 * 9 8 6 40 40 H 0.96698 * 113.99494 * 300.69852 * 11 10 9 41 41 H 1.09000 * 110.72260 * 337.48364 * 12 10 9 42 42 H 1.08995 * 110.72301 * 100.76402 * 12 10 9 43 43 H 1.08995 * 110.66943 * 278.97420 * 13 12 10 44 44 H 1.09007 * 110.81152 * 155.91194 * 13 12 10 45 45 H 1.09001 * 109.46905 * 67.39580 * 15 14 13 46 46 H 1.08997 * 109.46546 * 187.39159 * 15 14 13 47 47 H 0.97000 * 120.00106 * 359.97438 * 18 16 15 48 48 H 0.97002 * 120.00284 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.91683 * 265.98243 * 27 14 13 50 50 H 1.09000 * 109.91567 * 144.68262 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 6 5.3276 3.0575 -0.0001 7 8 6.0150 2.0583 -0.0001 8 7 5.9072 4.2743 -0.0012 9 6 7.3675 4.3900 -0.0018 10 6 7.7620 5.8682 -0.0024 11 8 7.3004 6.5044 1.1911 12 6 7.1844 6.5773 -1.2488 13 6 8.3303 7.5329 -1.6661 14 7 9.5538 6.7364 -1.3921 15 6 10.7307 7.6063 -1.2649 16 6 10.8254 8.5029 -2.4724 17 8 9.9941 8.4254 -3.3521 18 7 11.8340 9.3911 -2.5747 19 6 11.9199 10.2072 -3.6730 20 1 11.1791 10.1387 -4.4560 21 6 12.9599 11.1225 -3.7788 22 7 13.8610 11.2063 -2.8259 23 14 13.0774 12.2340 -5.2755 24 1 11.8533 13.0696 -5.3688 25 1 14.2675 13.1129 -5.1473 26 1 13.2043 11.4035 -6.5001 27 6 9.2899 6.0137 -0.1289 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8339 0.9765 -0.8892 34 1 3.8332 0.9768 0.8907 35 1 3.4221 3.4225 0.8894 36 1 3.4229 3.4214 -0.8906 37 1 5.3573 5.0734 -0.0016 38 1 7.7707 3.9071 0.8884 39 1 7.7700 3.9058 -0.8916 40 1 6.3421 6.4634 1.3131 41 1 6.9753 5.8572 -2.0400 42 1 6.2873 7.1402 -0.9912 43 1 8.3166 8.4381 -1.0591 44 1 8.2617 7.7805 -2.7254 45 1 10.6366 8.2158 -0.3662 46 1 11.6295 6.9936 -1.1959 47 1 12.4987 9.4534 -1.8710 48 1 14.5873 11.8450 -2.8999 49 1 9.6796 6.5846 0.7139 50 1 9.7553 5.0286 -0.1605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699892817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:08 Heat of formation + Delta-G solvation = -192.643412 kcal Electronic energy + Delta-G solvation = -29664.093211 eV Core-core repulsion = 25304.206823 eV Total energy + Delta-G solvation = -4359.886388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.43107 -40.64064 -39.69960 -38.87693 -37.12538 -35.86742 -35.37723 -33.54710 -33.35363 -32.39824 -31.28617 -30.25213 -28.62381 -26.80999 -25.57808 -24.20946 -23.68098 -22.79294 -21.49710 -21.19601 -21.08388 -19.88948 -18.74307 -18.13529 -17.58500 -17.48664 -17.15046 -17.12616 -16.72337 -16.42631 -16.32588 -16.08169 -15.75710 -15.68909 -15.24378 -15.08945 -14.78409 -14.62970 -14.43010 -14.31932 -13.74316 -13.71659 -13.45288 -13.21686 -13.15409 -13.05581 -12.94805 -12.70677 -12.68874 -12.45063 -12.34921 -12.31797 -12.12061 -12.03334 -12.01428 -11.88161 -11.48899 -11.09437 -10.96438 -10.61193 -10.21525 -10.16989 -10.01554 -9.40445 -8.47080 -5.96008 1.39364 1.41658 1.52540 1.56238 1.89700 2.02338 2.27694 2.69359 2.83877 3.18543 3.21578 3.28303 3.44169 3.60330 3.70906 3.77276 4.03317 4.10025 4.17454 4.22467 4.27789 4.32438 4.37920 4.44046 4.48416 4.50277 4.50896 4.61505 4.68187 4.72421 4.76903 4.79720 4.82979 4.92590 4.97854 5.04331 5.06820 5.22454 5.28099 5.30581 5.40539 5.80063 5.89115 6.06235 6.18063 6.42375 6.59186 6.73080 7.11619 7.15779 7.53869 8.09275 8.70116 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.001547 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.789907 B =18091.593949 C =18559.517166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.405 6.405 4 C 0.077 3.923 5 C -0.130 4.130 6 C 0.519 3.481 7 O -0.584 6.584 8 N -0.714 5.714 9 C 0.112 3.888 10 C 0.128 3.872 11 O -0.558 6.558 12 C -0.140 4.140 13 C 0.039 3.961 14 N -0.507 5.507 15 C 0.047 3.953 16 C 0.439 3.561 17 O -0.612 6.612 18 N -0.571 5.571 19 C -0.335 4.335 20 H 0.081 0.919 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.043 3.957 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.416 0.584 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.391 0.609 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.026 0.974 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.110 0.890 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.062 0.938 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.508 -16.856 11.217 30.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.325 6.325 4 C 0.000 4.000 5 C -0.170 4.170 6 C 0.307 3.693 7 O -0.464 6.464 8 N -0.367 5.367 9 C -0.012 4.012 10 C 0.087 3.913 11 O -0.367 6.367 12 C -0.178 4.178 13 C -0.088 4.088 14 N -0.232 5.232 15 C -0.085 4.085 16 C 0.227 3.773 17 O -0.499 6.499 18 N -0.208 5.208 19 C -0.464 4.464 20 H 0.099 0.901 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.085 4.085 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.253 0.747 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.242 0.758 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.044 0.956 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.128 0.872 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.754 -17.560 10.318 29.800 hybrid contribution 0.243 1.304 0.145 1.334 sum -21.511 -16.256 10.463 28.922 Atomic orbital electron populations 1.21762 0.92522 1.03398 1.02906 1.22660 0.96501 0.82779 1.00750 1.87780 1.21010 1.28077 1.95621 1.22065 0.80727 0.96270 1.00938 1.21439 0.90034 0.97735 1.07783 1.20836 0.91078 0.82716 0.74672 1.90730 1.66535 1.37878 1.51294 1.45753 1.07174 1.08707 1.75089 1.21863 0.80947 0.95493 1.02946 1.21994 0.94228 0.90051 0.85064 1.86624 1.29082 1.79347 1.41609 1.23245 0.98196 0.98774 0.97554 1.23266 0.88951 0.94392 1.02236 1.64702 1.02751 1.25327 1.30449 1.22007 0.96626 0.94946 0.94908 1.20627 0.83217 0.83612 0.89879 1.90426 1.42734 1.72595 1.44116 1.41908 1.24994 1.32980 1.20914 1.19650 1.11314 1.15481 0.99957 0.90101 1.26043 0.94706 0.99041 1.01357 1.69672 1.14476 1.37574 1.34396 0.84986 0.78003 0.77730 0.77602 1.19621 1.19544 1.19718 1.22924 0.93618 1.00880 0.91048 0.91959 0.92121 0.89370 0.92980 0.92771 0.93521 0.93179 0.85564 0.86043 0.74677 0.90816 0.91025 0.75847 0.89618 0.87819 0.95580 0.89996 0.91573 0.87168 0.77071 0.91283 0.91952 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 71.98 0.74 -0.55 16 2 C 0.05 0.59 6.66 71.98 0.48 1.07 16 3 O -0.40 -6.33 10.34 -148.98 -1.54 -7.87 16 4 C 0.08 1.16 5.23 71.98 0.38 1.54 16 5 C -0.13 -1.39 6.07 29.85 0.18 -1.21 16 6 C 0.52 8.57 7.83 87.66 0.69 9.25 16 7 O -0.58 -15.17 15.98 -3.03 -0.05 -15.21 16 8 N -0.71 -8.88 5.11 -463.06 -2.37 -11.25 16 9 C 0.11 1.95 4.50 86.38 0.39 2.34 16 10 C 0.13 2.43 1.05 -9.91 -0.01 2.42 16 11 O -0.56 -9.58 12.95 -148.98 -1.93 -11.51 16 12 C -0.14 -2.90 5.64 31.80 0.18 -2.72 16 13 C 0.04 1.27 5.31 86.65 0.46 1.73 16 14 N -0.51 -16.47 5.26 -887.56 -4.67 -21.14 16 15 C 0.05 1.66 5.52 85.55 0.47 2.13 16 16 C 0.44 20.92 7.49 87.65 0.66 21.58 16 17 O -0.61 -32.99 13.09 -3.05 -0.04 -33.03 16 18 N -0.57 -29.40 5.29 -306.99 -1.62 -31.02 16 19 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -49.74 13.05 21.67 0.28 -49.46 16 23 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 C 0.04 1.06 6.18 86.45 0.53 1.59 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 34 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 35 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.42 2.42 7.33 -92.71 -0.68 1.74 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.39 3.19 8.14 -74.06 -0.60 2.59 16 41 H 0.09 1.79 7.86 -2.39 -0.02 1.77 16 42 H 0.10 1.54 8.08 -2.39 -0.02 1.52 16 43 H 0.03 0.89 8.02 -2.39 -0.02 0.88 16 44 H 0.08 3.32 5.96 -2.38 -0.01 3.30 16 45 H 0.07 2.17 7.81 -2.39 -0.02 2.15 16 46 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 47 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 48 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 49 H 0.06 1.54 7.39 -2.39 -0.02 1.53 16 50 H 0.10 2.26 7.68 -2.39 -0.02 2.24 16 Total: -1.00 -75.42 408.14 -4.53 -79.95 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -1.04 Total: 34.86 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 6.42 Total: 20.89 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -8.38 Total: -112.87 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -3.56 Total: -67.62 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -75.42 -4.53 -79.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699892817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.698 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds