Wall clock time and date at job start Wed Apr 1 2020 02:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42903 * 109.47168 * 2 1 4 4 C 1.42897 * 113.99651 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47073 * 30.00510 * 4 3 2 6 6 C 1.52994 * 109.47216 * 270.00371 * 4 3 2 7 7 C 1.50697 * 109.46974 * 150.00070 * 4 3 2 8 8 O 1.21279 * 119.99919 * 5.00529 * 7 4 3 9 9 N 1.34777 * 120.00123 * 184.99935 * 7 4 3 10 10 C 1.46500 * 119.99794 * 174.96950 * 9 7 4 11 11 C 1.52995 * 112.94025 * 293.43477 * 10 9 7 12 12 C 1.53005 * 109.47368 * 303.66144 * 11 10 9 13 13 O 1.42894 * 109.47364 * 175.18802 * 12 11 10 14 14 C 1.53940 * 113.73157 * 161.73510 * 10 9 7 15 15 N 1.47963 * 86.18033 * 269.35770 * 14 10 9 16 16 C 1.46898 * 111.00230 * 222.41887 * 15 14 10 17 17 C 1.50708 * 109.46853 * 269.35877 * 16 15 14 18 18 O 1.21294 * 119.99903 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99506 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99309 * 180.02562 * 19 17 16 21 21 H 1.07992 * 120.00195 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99584 * 180.02562 * 20 19 17 23 23 N 1.31418 * 120.00162 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 120.00157 * 359.97438 * 22 20 19 25 25 H 1.48509 * 109.46649 * 90.00240 * 24 22 20 26 26 H 1.48499 * 109.47111 * 210.00122 * 24 22 20 27 27 H 1.48491 * 109.47152 * 330.00359 * 24 22 20 28 28 C 1.47962 * 90.76177 * 335.31126 * 15 14 10 29 29 H 1.08990 * 109.47532 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46987 * 59.99689 * 1 2 3 31 31 H 1.09004 * 109.46692 * 300.00189 * 1 2 3 32 32 H 1.08991 * 109.47009 * 120.00617 * 2 1 3 33 33 H 1.09003 * 109.46477 * 240.00320 * 2 1 3 34 34 H 1.08997 * 109.47213 * 300.00053 * 6 4 3 35 35 H 1.09004 * 109.47513 * 60.00101 * 6 4 3 36 36 H 1.09007 * 109.47263 * 180.02562 * 6 4 3 37 37 H 0.96998 * 120.00084 * 354.96828 * 9 7 4 38 38 H 1.09000 * 109.46920 * 63.66021 * 11 10 9 39 39 H 1.09001 * 109.47685 * 183.65922 * 11 10 9 40 40 H 1.08995 * 109.47060 * 295.18881 * 12 11 10 41 41 H 1.09000 * 109.46781 * 55.18952 * 12 11 10 42 42 H 0.96703 * 114.00457 * 180.02562 * 13 12 11 43 43 H 1.09001 * 113.75918 * 23.67531 * 14 10 9 44 44 H 1.08992 * 113.75986 * 155.04412 * 14 10 9 45 45 H 1.08994 * 109.47210 * 29.35442 * 16 15 14 46 46 H 1.09001 * 109.46996 * 149.36097 * 16 15 14 47 47 H 0.96998 * 120.00372 * 0.02562 * 19 17 16 48 48 H 0.96997 * 120.00242 * 180.02562 * 23 22 20 49 49 H 1.08995 * 113.75781 * 270.37272 * 28 15 14 50 50 H 1.09008 * 113.75942 * 139.00725 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9388 1.5004 1.4432 7 6 3.8349 2.7262 -0.7098 8 8 2.9866 3.5046 -1.0911 9 7 5.1388 2.9936 -0.9213 10 6 5.5277 4.1671 -1.7073 11 6 5.1172 4.0629 -3.1775 12 6 5.7103 2.7894 -3.7836 13 8 5.2362 2.6336 -5.1226 14 6 6.9919 4.5946 -1.4993 15 7 6.4812 5.4605 -0.4136 16 6 7.1256 6.7802 -0.4454 17 6 8.3600 6.7574 0.4189 18 8 8.6724 5.7415 1.0035 19 7 9.1173 7.8655 0.5415 20 6 10.2405 7.8446 1.3274 21 1 10.5186 6.9402 1.8478 22 6 11.0210 8.9872 1.4542 23 7 12.0974 8.9674 2.2078 24 14 10.5402 10.5515 0.5533 25 1 9.6482 11.3659 1.4173 26 1 11.7617 11.3310 0.2287 27 1 9.8285 10.2010 -0.7019 28 6 5.1468 5.5065 -1.0511 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.5062 2.3589 1.9568 35 1 3.6466 0.5845 1.9571 36 1 5.0254 1.5868 1.4437 37 1 5.8197 2.4091 -0.5531 38 1 4.0302 4.0275 -3.2495 39 1 5.4892 4.9314 -3.7211 40 1 6.7978 2.8621 -3.7894 41 1 5.4068 1.9283 -3.1883 42 1 5.5722 1.8447 -5.5696 43 1 7.6392 3.7896 -1.1514 44 1 7.4119 5.1465 -2.3401 45 1 7.4044 7.0238 -1.4705 46 1 6.4322 7.5322 -0.0689 47 1 8.8676 8.6778 0.0737 48 1 12.6420 9.7651 2.2966 49 1 5.0272 6.3249 -1.7609 50 1 4.3198 5.4300 -0.3450 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700502681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:49 Heat of formation + Delta-G solvation = -122.273567 kcal Electronic energy + Delta-G solvation = -31030.555527 eV Core-core repulsion = 26673.720605 eV Total energy + Delta-G solvation = -4356.834922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.15892 -39.48329 -38.19883 -37.55807 -37.05563 -34.38169 -33.87353 -32.87584 -31.68141 -31.48993 -30.16337 -29.15355 -26.34142 -25.66606 -24.72334 -23.75720 -23.05917 -21.82421 -20.88216 -19.49240 -19.29519 -18.35152 -17.79857 -17.50566 -17.17269 -16.24880 -16.06145 -15.81032 -15.55503 -15.39231 -15.05008 -14.91124 -14.76003 -14.37697 -14.20443 -13.55889 -13.50310 -13.40939 -13.19443 -13.04352 -12.84242 -12.58063 -12.52513 -12.40584 -12.28664 -12.20792 -11.94192 -11.81840 -11.68788 -11.41871 -11.35352 -11.24160 -11.02319 -10.69846 -10.59790 -10.25604 -10.12488 -9.97890 -9.57705 -9.56046 -9.22036 -8.82927 -8.29611 -8.17307 -6.30986 -3.82279 2.46570 2.56573 3.02139 3.07024 3.14960 3.57084 3.71647 3.74869 3.90415 4.10242 4.15648 4.42240 4.55649 4.60190 4.64059 4.77967 4.81358 4.88458 4.91098 4.98517 4.99740 5.14584 5.17792 5.19814 5.27889 5.37744 5.41080 5.43763 5.46982 5.50067 5.56844 5.59192 5.67905 5.77277 5.80213 5.84071 5.87956 5.92918 5.97199 6.41090 6.44164 6.77133 6.99987 7.34011 7.35143 7.58399 8.09384 8.14309 8.60799 8.95650 9.42952 9.84589 10.82209 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.002364 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.962051 B =11843.651514 C =12892.836218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.073 3.927 5 H 0.083 0.917 6 C -0.172 4.172 7 C 0.519 3.481 8 O -0.513 6.513 9 N -0.699 5.699 10 C 0.153 3.847 11 C -0.120 4.120 12 C 0.080 3.920 13 O -0.575 6.575 14 C 0.012 3.988 15 N -0.444 5.444 16 C 0.005 3.995 17 C 0.456 3.544 18 O -0.558 6.558 19 N -0.594 5.594 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.005 3.995 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.405 0.595 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.378 0.622 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.090 0.910 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.077 0.923 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.756 -16.944 -10.998 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.012 3.988 5 H 0.101 0.899 6 C -0.230 4.230 7 C 0.304 3.696 8 O -0.387 6.387 9 N -0.353 5.353 10 C 0.066 3.934 11 C -0.159 4.159 12 C 0.003 3.997 13 O -0.380 6.380 14 C -0.117 4.117 15 N -0.166 5.166 16 C -0.127 4.127 17 C 0.241 3.759 18 O -0.439 6.439 19 N -0.234 5.234 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.124 4.124 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.241 0.759 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.224 0.776 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.108 0.892 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.346 -16.430 -9.934 26.556 hybrid contribution 0.693 0.763 -1.292 1.653 sum -17.653 -15.667 -11.226 26.136 Atomic orbital electron populations 1.21728 0.93413 1.02183 1.03482 1.22585 0.95994 0.83575 1.00018 1.88066 1.18338 1.26229 1.94939 1.21865 0.83775 0.96250 0.96956 0.89874 1.22248 1.02126 1.03832 0.94745 1.20309 0.82408 0.87551 0.79302 1.90713 1.50163 1.48224 1.49587 1.45479 1.07030 1.27928 1.54845 1.21627 0.95811 0.86391 0.89617 1.21776 1.03414 0.97856 0.92888 1.22085 0.97268 0.97695 0.82690 1.86484 1.74470 1.49506 1.27527 1.24361 0.94269 0.98767 0.94304 1.68428 1.01460 1.09447 1.37247 1.22543 0.97415 0.93235 0.99502 1.19570 0.85411 0.84651 0.86222 1.90549 1.72197 1.31914 1.49242 1.42229 1.24981 1.11241 1.44935 1.19410 0.99434 1.00865 1.23491 0.86338 1.25038 0.95882 0.97968 0.97350 1.69621 1.14851 1.29670 1.38129 0.86673 0.78939 0.83840 0.79927 1.19616 1.20210 1.19572 1.24333 0.94781 0.95353 0.97970 0.91054 0.91667 0.91680 0.93165 0.93358 0.90805 0.91329 0.90501 0.75929 0.89526 0.90071 0.93421 0.93836 0.77559 0.88453 0.89882 0.92173 0.89151 0.79781 0.91649 0.90491 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.05 0.42 6.47 37.16 0.24 0.66 16 3 O -0.36 -4.03 9.53 -55.09 -0.52 -4.56 16 4 C 0.07 0.69 3.13 -27.89 -0.09 0.60 16 5 H 0.08 0.55 7.79 -51.93 -0.40 0.15 16 6 C -0.17 -1.43 9.47 37.15 0.35 -1.08 16 7 C 0.52 6.22 6.74 -10.99 -0.07 6.14 16 8 O -0.51 -8.14 14.46 -14.30 -0.21 -8.35 16 9 N -0.70 -7.20 4.45 -48.69 -0.22 -7.41 16 10 C 0.15 1.73 0.61 -133.51 -0.08 1.64 16 11 C -0.12 -1.29 4.90 -26.73 -0.13 -1.42 16 12 C 0.08 0.73 6.86 37.16 0.26 0.98 16 13 O -0.57 -5.56 13.66 -35.23 -0.48 -6.04 16 14 C 0.01 0.15 7.11 -2.76 -0.02 0.13 16 15 N -0.44 -6.85 5.65 -239.54 -1.35 -8.20 16 16 C 0.01 0.09 5.28 -4.97 -0.03 0.06 16 17 C 0.46 10.30 7.83 -10.98 -0.09 10.22 16 18 O -0.56 -14.84 16.01 5.54 0.09 -14.75 16 19 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 20 C -0.30 -8.56 10.16 -14.93 -0.15 -8.72 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 23 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 24 Si 0.88 19.42 27.74 -169.99 -4.71 14.70 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 28 C 0.01 0.07 6.80 -2.77 -0.02 0.05 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 33 H 0.05 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 36 H 0.08 0.57 7.77 -51.92 -0.40 0.17 16 37 H 0.41 3.35 8.29 -40.82 -0.34 3.01 16 38 H 0.09 1.13 7.20 -51.93 -0.37 0.76 16 39 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 40 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 41 H 0.04 0.36 7.54 -51.93 -0.39 -0.03 16 42 H 0.38 1.87 9.12 45.56 0.42 2.28 16 43 H 0.10 1.24 8.09 -51.93 -0.42 0.82 16 44 H 0.08 0.95 7.41 -51.93 -0.38 0.57 16 45 H 0.06 0.84 7.38 -51.93 -0.38 0.46 16 46 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 47 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 50 H 0.10 1.47 7.24 -51.92 -0.38 1.10 16 LS Contribution 410.26 15.07 6.18 6.18 Total: -1.00 -37.49 410.26 -7.50 -44.99 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -7.45 Total: 12.98 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 0.46 Total: 9.63 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.85 Total: -54.79 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.12 Total: -33.70 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.49 -7.50 -44.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700502681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.279 kcal (2) G-P(sol) polarization free energy of solvation -37.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds