Wall clock time and date at job start Wed Apr 1 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42903 * 109.47168 * 2 1 4 4 C 1.42897 * 113.99651 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47073 * 30.00510 * 4 3 2 6 6 C 1.52994 * 109.47216 * 270.00371 * 4 3 2 7 7 C 1.50697 * 109.46974 * 150.00070 * 4 3 2 8 8 O 1.21279 * 119.99919 * 5.00529 * 7 4 3 9 9 N 1.34777 * 120.00123 * 184.99935 * 7 4 3 10 10 C 1.46500 * 119.99794 * 174.96950 * 9 7 4 11 11 C 1.52995 * 112.94025 * 293.43477 * 10 9 7 12 12 C 1.53005 * 109.47368 * 303.66144 * 11 10 9 13 13 O 1.42894 * 109.47364 * 175.18802 * 12 11 10 14 14 C 1.53940 * 113.73157 * 161.73510 * 10 9 7 15 15 N 1.47963 * 86.18033 * 269.35770 * 14 10 9 16 16 C 1.46898 * 111.00230 * 222.41887 * 15 14 10 17 17 C 1.50708 * 109.46853 * 269.35877 * 16 15 14 18 18 O 1.21294 * 119.99903 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99506 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99309 * 180.02562 * 19 17 16 21 21 H 1.07992 * 120.00195 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99584 * 180.02562 * 20 19 17 23 23 N 1.31418 * 120.00162 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 120.00157 * 359.97438 * 22 20 19 25 25 H 1.48509 * 109.46649 * 90.00240 * 24 22 20 26 26 H 1.48499 * 109.47111 * 210.00122 * 24 22 20 27 27 H 1.48491 * 109.47152 * 330.00359 * 24 22 20 28 28 C 1.47962 * 90.76177 * 335.31126 * 15 14 10 29 29 H 1.08990 * 109.47532 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46987 * 59.99689 * 1 2 3 31 31 H 1.09004 * 109.46692 * 300.00189 * 1 2 3 32 32 H 1.08991 * 109.47009 * 120.00617 * 2 1 3 33 33 H 1.09003 * 109.46477 * 240.00320 * 2 1 3 34 34 H 1.08997 * 109.47213 * 300.00053 * 6 4 3 35 35 H 1.09004 * 109.47513 * 60.00101 * 6 4 3 36 36 H 1.09007 * 109.47263 * 180.02562 * 6 4 3 37 37 H 0.96998 * 120.00084 * 354.96828 * 9 7 4 38 38 H 1.09000 * 109.46920 * 63.66021 * 11 10 9 39 39 H 1.09001 * 109.47685 * 183.65922 * 11 10 9 40 40 H 1.08995 * 109.47060 * 295.18881 * 12 11 10 41 41 H 1.09000 * 109.46781 * 55.18952 * 12 11 10 42 42 H 0.96703 * 114.00457 * 180.02562 * 13 12 11 43 43 H 1.09001 * 113.75918 * 23.67531 * 14 10 9 44 44 H 1.08992 * 113.75986 * 155.04412 * 14 10 9 45 45 H 1.08994 * 109.47210 * 29.35442 * 16 15 14 46 46 H 1.09001 * 109.46996 * 149.36097 * 16 15 14 47 47 H 0.96998 * 120.00372 * 0.02562 * 19 17 16 48 48 H 0.96997 * 120.00242 * 180.02562 * 23 22 20 49 49 H 1.08995 * 113.75781 * 270.37272 * 28 15 14 50 50 H 1.09008 * 113.75942 * 139.00725 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8635 0.6015 -0.5130 6 6 3.9388 1.5004 1.4432 7 6 3.8349 2.7262 -0.7098 8 8 2.9866 3.5046 -1.0911 9 7 5.1388 2.9936 -0.9213 10 6 5.5277 4.1671 -1.7073 11 6 5.1172 4.0629 -3.1775 12 6 5.7103 2.7894 -3.7836 13 8 5.2362 2.6336 -5.1226 14 6 6.9919 4.5946 -1.4993 15 7 6.4812 5.4605 -0.4136 16 6 7.1256 6.7802 -0.4454 17 6 8.3600 6.7574 0.4189 18 8 8.6724 5.7415 1.0035 19 7 9.1173 7.8655 0.5415 20 6 10.2405 7.8446 1.3274 21 1 10.5186 6.9402 1.8478 22 6 11.0210 8.9872 1.4542 23 7 12.0974 8.9674 2.2078 24 14 10.5402 10.5515 0.5533 25 1 9.6482 11.3659 1.4173 26 1 11.7617 11.3310 0.2287 27 1 9.8285 10.2010 -0.7019 28 6 5.1468 5.5065 -1.0511 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.5062 2.3589 1.9568 35 1 3.6466 0.5845 1.9571 36 1 5.0254 1.5868 1.4437 37 1 5.8197 2.4091 -0.5531 38 1 4.0302 4.0275 -3.2495 39 1 5.4892 4.9314 -3.7211 40 1 6.7978 2.8621 -3.7894 41 1 5.4068 1.9283 -3.1883 42 1 5.5722 1.8447 -5.5696 43 1 7.6392 3.7896 -1.1514 44 1 7.4119 5.1465 -2.3401 45 1 7.4044 7.0238 -1.4705 46 1 6.4322 7.5322 -0.0689 47 1 8.8676 8.6778 0.0737 48 1 12.6420 9.7651 2.2966 49 1 5.0272 6.3249 -1.7609 50 1 4.3198 5.4300 -0.3450 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700502681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:48 Heat of formation + Delta-G solvation = -156.152544 kcal Electronic energy + Delta-G solvation = -31032.024630 eV Core-core repulsion = 26673.720605 eV Total energy + Delta-G solvation = -4358.304025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.15618 -40.53569 -39.75032 -38.50614 -37.79733 -35.99443 -35.27435 -33.76889 -33.59626 -32.28345 -30.85001 -30.39739 -27.34900 -27.18602 -25.74073 -24.92683 -23.64846 -22.85411 -21.78701 -21.23482 -20.40024 -20.14844 -18.57943 -18.33818 -17.90618 -17.76862 -17.08087 -16.89520 -16.67383 -16.42068 -16.22671 -16.04280 -15.95315 -15.37728 -15.21136 -15.01656 -14.60441 -14.55598 -14.32215 -14.24871 -14.10239 -13.75915 -13.41764 -13.39575 -13.18875 -13.07981 -12.97509 -12.88045 -12.75542 -12.42552 -12.32187 -12.28128 -12.24044 -12.01544 -11.97430 -11.61278 -11.49762 -10.97268 -10.83738 -10.48286 -10.40067 -10.23037 -10.15705 -9.64930 -8.40476 -6.00771 1.29909 1.35569 1.43931 1.56399 1.77156 1.97731 2.23014 2.57322 2.88909 3.02082 3.14735 3.19741 3.28328 3.64875 3.87405 3.90455 4.00206 4.06463 4.11546 4.20043 4.22436 4.28435 4.32837 4.34326 4.40316 4.45394 4.48773 4.52403 4.58878 4.66039 4.72898 4.77113 4.79474 4.88722 4.94103 5.02055 5.10755 5.19466 5.27007 5.32950 5.52184 5.54021 5.87129 5.98994 6.12491 6.53384 6.60834 6.89005 6.89812 7.21971 7.41567 7.98910 8.77075 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.002364 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.962051 B =11843.651514 C =12892.836218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.391 6.391 4 C 0.075 3.925 5 H 0.117 0.883 6 C -0.167 4.167 7 C 0.516 3.484 8 O -0.558 6.558 9 N -0.691 5.691 10 C 0.165 3.835 11 C -0.114 4.114 12 C 0.082 3.918 13 O -0.595 6.595 14 C 0.015 3.985 15 N -0.475 5.475 16 C 0.016 3.984 17 C 0.456 3.544 18 O -0.605 6.605 19 N -0.595 5.595 20 C -0.325 4.325 21 H 0.056 0.944 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.260 1.260 26 H -0.275 1.275 27 H -0.231 1.231 28 C 0.008 3.992 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.416 0.584 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.397 0.603 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.388 0.612 48 H 0.278 0.722 49 H 0.097 0.903 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.783 -16.769 -13.407 28.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.310 6.310 4 C 0.014 3.986 5 H 0.134 0.866 6 C -0.224 4.224 7 C 0.302 3.698 8 O -0.435 6.435 9 N -0.345 5.345 10 C 0.077 3.923 11 C -0.153 4.153 12 C 0.005 3.995 13 O -0.403 6.403 14 C -0.114 4.114 15 N -0.198 5.198 16 C -0.115 4.115 17 C 0.243 3.757 18 O -0.488 6.488 19 N -0.237 5.237 20 C -0.454 4.454 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.783 3.217 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.154 1.154 28 C -0.121 4.121 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.253 0.747 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.247 0.753 43 H 0.111 0.889 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.129 0.871 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.115 0.885 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.372 -16.301 -12.361 28.174 hybrid contribution 1.012 0.550 -0.473 1.246 sum -18.359 -15.751 -12.834 27.384 Atomic orbital electron populations 1.21768 0.93259 1.03429 1.02366 1.22823 0.96248 0.82306 1.01480 1.88035 1.19300 1.28543 1.95134 1.21957 0.83469 0.95854 0.97354 0.86588 1.22223 1.02439 1.03699 0.94083 1.20866 0.82249 0.88006 0.78655 1.90688 1.51366 1.49846 1.51602 1.45450 1.07003 1.27700 1.54311 1.21471 0.94813 0.85961 0.90069 1.21683 1.01822 0.99351 0.92441 1.22056 0.97900 0.96932 0.82633 1.86428 1.75055 1.51055 1.27790 1.24427 0.94716 0.98341 0.93933 1.68367 1.02731 1.09316 1.39398 1.22486 0.94508 0.94701 0.99832 1.20790 0.86252 0.83293 0.85323 1.90526 1.73630 1.33674 1.51012 1.42068 1.24071 1.12623 1.44944 1.18986 1.01933 0.99422 1.25038 0.92568 1.26092 0.95175 1.02236 0.97969 1.69802 1.16454 1.31351 1.39967 0.85389 0.79104 0.77359 0.79828 1.18484 1.20028 1.15398 1.24320 0.92783 0.97236 0.97766 0.88612 0.93001 0.92567 0.91422 0.92011 0.93347 0.89334 0.89618 0.74672 0.92027 0.89289 0.91906 0.93262 0.75273 0.88941 0.88056 0.88555 0.87109 0.77637 0.91219 0.88452 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 71.98 0.74 -1.19 16 2 C 0.05 0.65 6.47 71.98 0.47 1.11 16 3 O -0.39 -8.61 9.53 -129.99 -1.24 -9.85 16 4 C 0.07 1.32 3.13 29.85 0.09 1.41 16 5 H 0.12 1.24 7.79 -2.39 -0.02 1.22 16 6 C -0.17 -2.62 9.47 71.98 0.68 -1.94 16 7 C 0.52 12.14 6.74 87.66 0.59 12.73 16 8 O -0.56 -18.01 14.46 15.97 0.23 -17.78 16 9 N -0.69 -13.51 4.45 -426.35 -1.90 -15.41 16 10 C 0.16 3.46 0.61 5.17 0.00 3.47 16 11 C -0.11 -2.25 4.90 30.59 0.15 -2.10 16 12 C 0.08 1.31 6.86 71.98 0.49 1.80 16 13 O -0.59 -10.24 13.66 -148.98 -2.03 -12.27 16 14 C 0.01 0.34 7.11 86.41 0.61 0.95 16 15 N -0.48 -13.93 5.65 -911.77 -5.15 -19.08 16 16 C 0.02 0.50 5.28 85.56 0.45 0.95 16 17 C 0.46 20.35 7.83 87.66 0.69 21.04 16 18 O -0.60 -32.99 16.01 -3.07 -0.05 -33.04 16 19 N -0.59 -27.86 5.09 -306.98 -1.56 -29.43 16 20 C -0.32 -18.91 10.16 84.04 0.85 -18.05 16 21 H 0.06 3.90 7.39 -2.91 -0.02 3.87 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 23 N -0.93 -56.27 13.96 21.66 0.30 -55.97 16 24 Si 0.96 38.81 27.74 68.60 1.90 40.71 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 28 C 0.01 0.20 6.80 86.40 0.59 0.79 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.67 7.87 -2.39 -0.02 0.66 16 33 H 0.06 0.67 8.09 -2.39 -0.02 0.65 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.02 7.87 -2.38 -0.02 1.01 16 36 H 0.09 1.17 7.77 -2.38 -0.02 1.15 16 37 H 0.42 6.30 8.29 -92.71 -0.77 5.54 16 38 H 0.06 1.57 7.20 -2.39 -0.02 1.55 16 39 H 0.09 1.60 8.11 -2.39 -0.02 1.58 16 40 H 0.06 0.82 8.09 -2.39 -0.02 0.80 16 41 H 0.05 0.71 7.54 -2.39 -0.02 0.70 16 42 H 0.40 3.01 9.12 -74.06 -0.68 2.34 16 43 H 0.09 2.22 8.09 -2.39 -0.02 2.20 16 44 H 0.10 1.97 7.41 -2.39 -0.02 1.95 16 45 H 0.10 2.27 7.38 -2.39 -0.02 2.25 16 46 H 0.11 2.95 8.08 -2.39 -0.02 2.93 16 47 H 0.39 15.10 5.76 -92.71 -0.53 14.56 16 48 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 49 H 0.10 2.00 7.88 -2.39 -0.02 1.98 16 50 H 0.08 2.28 7.24 -2.38 -0.02 2.26 16 Total: -1.00 -87.72 410.26 -3.68 -91.40 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: -1.06 Total: 40.18 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 6.88 Total: 20.53 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -8.31 Total: -119.88 kcal Atomic # 8 Polarization: -69.85 SS G_CDS: -3.09 Total: -72.95 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.71 kcal Total: -87.72 -3.68 -91.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700502681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.754 kcal (2) G-P(sol) polarization free energy of solvation -87.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds