Wall clock time and date at job start Wed Apr 1 2020 02:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46963 * 2 1 4 4 C 1.42902 * 114.00130 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46982 * 329.99562 * 4 3 2 6 6 C 1.52997 * 109.47281 * 89.99832 * 4 3 2 7 7 C 1.50704 * 109.46853 * 209.99837 * 4 3 2 8 8 O 1.21278 * 120.00297 * 354.99650 * 7 4 3 9 9 N 1.34780 * 119.99845 * 174.99618 * 7 4 3 10 10 C 1.46494 * 119.99866 * 174.92465 * 9 7 4 11 11 C 1.53001 * 113.38271 * 307.50154 * 10 9 7 12 12 C 1.53000 * 109.47259 * 292.15468 * 11 10 9 13 13 O 1.42895 * 109.47018 * 184.62706 * 12 11 10 14 14 C 1.53516 * 114.16820 * 174.42295 * 10 9 7 15 15 N 1.47479 * 87.99813 * 272.40812 * 14 10 9 16 16 C 1.46901 * 110.99802 * 221.26881 * 15 14 10 17 17 C 1.50702 * 109.46748 * 169.99590 * 16 15 14 18 18 O 1.21296 * 120.00256 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99956 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99898 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00193 * 0.02562 * 20 19 17 22 22 C 1.38944 * 119.99756 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00171 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00334 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46621 * 59.99885 * 24 22 20 26 26 H 1.48492 * 109.47276 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46788 * 300.00641 * 24 22 20 28 28 C 1.47485 * 87.83278 * 332.95980 * 15 14 10 29 29 H 1.09002 * 109.47083 * 299.99874 * 1 2 3 30 30 H 1.09000 * 109.47371 * 60.00501 * 1 2 3 31 31 H 1.09002 * 109.46766 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47083 * 240.00126 * 2 1 3 33 33 H 1.09000 * 109.47371 * 119.99499 * 2 1 3 34 34 H 1.09003 * 109.46844 * 299.99774 * 6 4 3 35 35 H 1.08994 * 109.47276 * 60.00319 * 6 4 3 36 36 H 1.09008 * 109.46860 * 180.02562 * 6 4 3 37 37 H 0.96999 * 120.00013 * 354.92655 * 9 7 4 38 38 H 1.08995 * 109.47358 * 52.15745 * 11 10 9 39 39 H 1.09004 * 109.46841 * 172.16056 * 11 10 9 40 40 H 1.09003 * 109.47235 * 304.62883 * 12 11 10 41 41 H 1.09004 * 109.46758 * 64.62846 * 12 11 10 42 42 H 0.96703 * 114.00181 * 179.97438 * 13 12 11 43 43 H 1.08997 * 113.47458 * 157.61069 * 14 10 9 44 44 H 1.09001 * 113.47449 * 27.20548 * 14 10 9 45 45 H 1.09002 * 109.47132 * 289.99641 * 16 15 14 46 46 H 1.09001 * 109.47313 * 49.99920 * 16 15 14 47 47 H 0.96993 * 119.99493 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00235 * 179.97438 * 23 22 20 49 49 H 1.08999 * 113.47069 * 141.77948 * 28 15 14 50 50 H 1.08998 * 113.47529 * 272.18210 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8635 0.6017 0.5130 6 6 3.9387 1.5007 -1.4432 7 6 3.8346 2.7265 0.7098 8 8 2.9863 3.5048 1.0912 9 7 5.1386 2.9940 0.9214 10 6 5.5373 4.2743 1.5113 11 6 4.9555 5.4866 0.7813 12 6 5.5820 5.5930 -0.6104 13 8 5.1203 6.7840 -1.2509 14 6 7.0375 4.3852 1.8173 15 7 6.7616 3.7766 3.1321 16 6 7.5316 4.4414 4.1919 17 6 7.0475 3.9664 5.5377 18 8 6.1498 3.1537 5.6071 19 7 7.6128 4.4439 6.6642 20 6 7.1728 4.0114 7.8884 21 1 6.3735 3.2878 7.9502 22 6 7.7553 4.5041 9.0497 23 7 8.7275 5.3850 8.9746 24 14 7.1554 3.9153 10.7180 25 1 7.3399 2.4453 10.8198 26 1 7.9333 4.5878 11.7893 27 1 5.7155 4.2452 10.8708 28 6 5.3986 4.3327 3.0408 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.6466 0.5848 -1.9570 35 1 3.5060 2.3592 -1.9568 36 1 5.0254 1.5863 -1.4436 37 1 5.8130 2.3388 0.6830 38 1 3.8760 5.3696 0.6858 39 1 5.1742 6.3915 1.3483 40 1 6.6676 5.6273 -0.5186 41 1 5.2950 4.7258 -1.2053 42 1 5.4781 6.9169 -2.1394 43 1 7.3928 5.4137 1.8809 44 1 7.6592 3.7636 1.1730 45 1 8.5884 4.1992 4.0796 46 1 7.3961 5.5204 4.1172 47 1 8.3309 5.0935 6.6086 48 1 9.1339 5.7292 9.7853 49 1 4.6306 3.6662 3.4332 50 1 5.3164 5.3468 3.4319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700502682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:51 Heat of formation + Delta-G solvation = -161.199492 kcal Electronic energy + Delta-G solvation = -31086.880596 eV Core-core repulsion = 26728.357718 eV Total energy + Delta-G solvation = -4358.522877 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.26517 -40.59302 -39.68795 -38.55683 -37.76861 -36.01822 -35.25804 -33.67658 -33.28415 -32.33687 -30.89453 -30.30979 -27.37747 -27.00363 -25.81157 -24.92916 -23.66521 -23.11037 -21.77498 -21.00463 -20.38270 -19.91133 -18.53572 -18.32672 -17.93673 -17.80819 -16.98947 -16.74360 -16.69372 -16.52413 -16.34585 -16.21923 -15.74275 -15.48062 -15.30346 -15.16360 -14.62688 -14.46394 -14.21951 -14.15238 -13.77588 -13.53700 -13.39169 -13.38673 -13.20534 -13.09758 -12.96027 -12.88154 -12.62739 -12.57831 -12.45918 -12.30759 -12.19380 -12.11970 -12.02241 -11.55638 -11.49853 -10.99222 -10.80015 -10.39100 -10.35920 -10.17345 -10.04401 -9.79500 -8.49329 -5.98084 1.36774 1.38651 1.49545 1.55510 1.75814 2.02745 2.26413 2.78944 2.89699 2.96664 3.17351 3.31515 3.39573 3.61042 3.84872 3.91385 4.03757 4.10790 4.18163 4.18787 4.26898 4.30606 4.31751 4.40995 4.43401 4.46601 4.49912 4.55830 4.62609 4.65719 4.68676 4.80844 4.82482 4.88309 4.94386 4.99877 5.17317 5.20972 5.24484 5.25879 5.37734 5.53708 5.82164 6.02148 6.12147 6.57411 6.57745 6.94921 7.10230 7.25009 7.53231 8.09996 8.67821 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.002572 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.641740 B =10885.512734 C =12754.761120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.394 6.394 4 C 0.070 3.930 5 H 0.106 0.894 6 C -0.159 4.159 7 C 0.510 3.490 8 O -0.564 6.564 9 N -0.683 5.683 10 C 0.166 3.834 11 C -0.120 4.120 12 C 0.089 3.911 13 O -0.597 6.597 14 C 0.012 3.988 15 N -0.459 5.459 16 C 0.020 3.980 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.267 1.267 27 H -0.275 1.275 28 C 0.004 3.996 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.420 0.580 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.398 0.602 43 H 0.106 0.894 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.080 0.920 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.045 0.955 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 -5.717 -26.895 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.313 6.313 4 C 0.009 3.991 5 H 0.124 0.876 6 C -0.217 4.217 7 C 0.297 3.703 8 O -0.442 6.442 9 N -0.337 5.337 10 C 0.078 3.922 11 C -0.159 4.159 12 C 0.012 3.988 13 O -0.406 6.406 14 C -0.117 4.117 15 N -0.181 5.181 16 C -0.111 4.111 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.465 4.465 21 H 0.092 0.908 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.814 3.186 25 H -0.197 1.197 26 H -0.191 1.191 27 H -0.200 1.200 28 C -0.126 4.126 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.259 0.741 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.248 0.752 43 H 0.124 0.876 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.098 0.902 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.063 0.937 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.161 -6.109 -25.736 26.639 hybrid contribution 0.399 0.515 0.958 1.159 sum -2.762 -5.594 -24.778 25.551 Atomic orbital electron populations 1.21769 0.93277 1.03435 1.02340 1.22811 0.96271 0.82351 1.01384 1.88025 1.19612 1.28462 1.95199 1.22042 0.83380 0.95294 0.98389 0.87627 1.22201 1.02959 1.04019 0.92486 1.21057 0.82418 0.88202 0.78644 1.90692 1.51623 1.50507 1.51342 1.45265 1.07160 1.18125 1.63173 1.21106 0.96122 0.84343 0.90673 1.21647 1.01778 0.96057 0.96449 1.22024 0.98214 0.86751 0.91843 1.86449 1.74344 1.44070 1.35759 1.24366 0.93922 1.02119 0.91275 1.68833 1.02283 1.45337 1.01634 1.22427 1.00934 0.98198 0.89563 1.20835 0.85158 0.84825 0.86670 1.90512 1.34263 1.38176 1.87880 1.41921 1.34321 1.40060 1.04792 1.19574 1.18725 1.24407 0.83760 0.90757 1.26004 0.96049 0.96251 1.02789 1.69654 1.24922 1.30102 1.31239 0.85028 0.78222 0.78510 0.76813 1.19659 1.19150 1.20023 1.24096 0.93500 0.98577 0.96435 0.93626 0.91947 0.88604 0.90588 0.93028 0.89405 0.92542 0.88340 0.74109 0.91972 0.90521 0.90721 0.93148 0.75151 0.87624 0.85422 0.86088 0.90197 0.76890 0.91212 0.93665 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 0.81 6.47 71.98 0.47 1.27 16 3 O -0.39 -9.79 9.53 -129.99 -1.24 -11.03 16 4 C 0.07 1.35 3.13 29.85 0.09 1.44 16 5 H 0.11 1.59 7.79 -2.39 -0.02 1.57 16 6 C -0.16 -1.80 9.48 71.98 0.68 -1.12 16 7 C 0.51 13.61 6.90 87.66 0.60 14.21 16 8 O -0.56 -21.30 14.50 15.96 0.23 -21.07 16 9 N -0.68 -14.28 5.21 -421.72 -2.20 -16.47 16 10 C 0.17 3.93 0.70 4.11 0.00 3.93 16 11 C -0.12 -2.90 4.92 30.59 0.15 -2.75 16 12 C 0.09 1.47 6.89 71.98 0.50 1.96 16 13 O -0.60 -11.11 13.66 -148.98 -2.03 -13.14 16 14 C 0.01 0.22 6.23 83.57 0.52 0.74 16 15 N -0.46 -14.10 6.06 -931.66 -5.65 -19.74 16 16 C 0.02 0.68 5.31 85.56 0.45 1.13 16 17 C 0.44 21.32 7.62 87.66 0.67 21.98 16 18 O -0.62 -35.95 15.34 -3.08 -0.05 -36.00 16 19 N -0.57 -29.96 5.29 -306.98 -1.62 -31.58 16 20 C -0.34 -19.50 9.68 84.04 0.81 -18.69 16 21 H 0.07 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 23 N -0.92 -49.96 13.05 21.66 0.28 -49.67 16 24 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.00 0.15 6.11 83.63 0.51 0.66 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 0.85 7.87 -2.39 -0.02 0.83 16 33 H 0.05 0.85 8.09 -2.39 -0.02 0.83 16 34 H 0.09 0.69 7.87 -2.39 -0.02 0.67 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.58 8.10 -2.38 -0.02 0.56 16 37 H 0.42 5.77 8.63 -92.71 -0.80 4.97 16 38 H 0.06 2.00 5.99 -2.39 -0.01 1.98 16 39 H 0.08 1.88 8.01 -2.39 -0.02 1.86 16 40 H 0.07 0.81 7.51 -2.39 -0.02 0.79 16 41 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.40 3.17 9.12 -74.06 -0.68 2.50 16 43 H 0.11 1.60 7.73 -2.39 -0.02 1.58 16 44 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 46 H 0.08 2.33 7.56 -2.39 -0.02 2.31 16 47 H 0.40 19.46 7.90 -92.71 -0.73 18.72 16 48 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 49 H 0.04 1.99 8.13 -2.39 -0.02 1.97 16 50 H 0.07 2.33 7.57 -2.39 -0.02 2.31 16 Total: -1.00 -87.26 413.05 -4.81 -92.07 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -1.23 Total: 37.79 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 6.67 Total: 22.99 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -9.19 Total: -117.47 kcal Atomic # 8 Polarization: -78.16 SS G_CDS: -3.09 Total: -81.25 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -87.26 -4.81 -92.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700502682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.133 kcal (2) G-P(sol) polarization free energy of solvation -87.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds