Wall clock time and date at job start Wed Apr 1 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00328 * 2 1 4 4 C 1.52996 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47057 * 305.00399 * 4 3 2 6 6 O 1.42898 * 109.47459 * 65.00074 * 4 3 2 7 7 C 1.42894 * 114.00196 * 270.00103 * 6 4 3 8 8 C 1.50707 * 109.47112 * 185.00437 * 4 3 2 9 9 O 1.21282 * 119.99650 * 245.00073 * 8 4 3 10 10 N 1.34768 * 120.00158 * 64.99714 * 8 4 3 11 11 C 1.46494 * 120.00196 * 180.02562 * 10 8 4 12 12 C 1.52999 * 109.47508 * 185.05565 * 11 10 8 13 13 H 1.09006 * 109.87481 * 303.45054 * 12 11 10 14 14 C 1.54323 * 109.89107 * 64.64925 * 12 11 10 15 15 C 1.55138 * 103.01705 * 141.69383 * 14 12 11 16 16 C 1.54905 * 101.65281 * 324.34545 * 15 14 12 17 17 N 1.47446 * 109.89206 * 182.42230 * 12 11 10 18 18 C 1.46898 * 110.99531 * 3.84821 * 17 12 11 19 19 C 1.50702 * 109.46742 * 172.13422 * 18 17 12 20 20 O 1.21294 * 119.99942 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00167 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00175 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00218 * 359.97438 * 22 21 19 24 24 C 1.38962 * 119.99737 * 179.72428 * 22 21 19 25 25 N 1.31408 * 120.00051 * 0.27120 * 24 22 21 26 26 Si 1.86795 * 119.99697 * 180.27252 * 24 22 21 27 27 H 1.48507 * 109.47370 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47199 * 119.99993 * 26 24 22 29 29 H 1.48497 * 109.47235 * 239.99738 * 26 24 22 30 30 H 1.08992 * 109.47332 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46632 * 299.99825 * 1 2 3 32 32 H 1.08999 * 109.46950 * 59.99406 * 1 2 3 33 33 H 1.09007 * 109.46718 * 60.00441 * 3 2 1 34 34 H 1.08994 * 109.47348 * 300.00632 * 3 2 1 35 35 H 1.08997 * 109.47297 * 299.99744 * 7 6 4 36 36 H 1.09006 * 109.47028 * 59.99715 * 7 6 4 37 37 H 1.09004 * 109.47239 * 179.97438 * 7 6 4 38 38 H 0.97010 * 120.00155 * 0.02562 * 10 8 4 39 39 H 1.09006 * 109.47158 * 65.05243 * 11 10 8 40 40 H 1.09002 * 109.47122 * 305.05516 * 11 10 8 41 41 H 1.08994 * 110.70403 * 260.07677 * 14 12 11 42 42 H 1.08993 * 110.70184 * 23.30726 * 14 12 11 43 43 H 1.08995 * 110.99191 * 82.43992 * 15 14 12 44 44 H 1.09006 * 110.98729 * 206.25785 * 15 14 12 45 45 H 1.08999 * 110.37494 * 278.24265 * 16 15 14 46 46 H 1.09001 * 110.37232 * 155.90490 * 16 15 14 47 47 H 1.09002 * 109.47029 * 52.13843 * 18 17 12 48 48 H 1.08989 * 109.47435 * 292.13259 * 18 17 12 49 49 H 0.97006 * 119.99908 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99681 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8514 0.5680 0.8409 6 8 3.9649 0.5795 -1.2219 7 6 4.0463 -0.8460 -1.1672 8 6 4.1482 2.5559 0.1233 9 8 4.8064 3.0105 -0.7883 10 7 3.9646 3.2769 1.2470 11 6 4.5597 4.6101 1.3672 12 6 4.3088 5.1556 2.7745 13 1 3.2389 5.1647 2.9831 14 6 5.0426 4.2830 3.8145 15 6 5.5555 5.3237 4.8444 16 6 5.9026 6.5245 3.9294 17 7 4.8535 6.5211 2.8877 18 6 5.3888 6.9827 1.5999 19 6 5.7578 8.4402 1.7028 20 8 5.5908 9.0359 2.7461 21 7 6.2724 9.0821 0.6353 22 6 6.6086 10.4079 0.7291 23 1 6.4607 10.9381 1.6582 24 6 7.1445 11.0681 -0.3700 25 7 7.3241 10.4231 -1.5007 26 14 7.6097 12.8725 -0.2400 27 1 7.3102 13.3636 1.1292 28 1 9.0600 13.0311 -0.5170 29 1 6.8282 13.6577 -1.2289 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6887 1.8463 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 4.7575 -1.1400 -0.3953 36 1 3.0645 -1.2573 -0.9324 37 1 4.3786 -1.2283 -2.1324 38 1 3.4384 2.9131 1.9762 39 1 4.1079 5.2772 0.6330 40 1 5.6330 4.5464 1.1883 41 1 4.3529 3.5825 4.2852 42 1 5.8764 3.7535 3.3536 43 1 4.7728 5.5879 5.5553 44 1 6.4427 4.9572 5.3609 45 1 6.8854 6.3866 3.4787 46 1 5.8714 7.4550 4.4963 47 1 4.6333 6.8530 0.8250 48 1 6.2744 6.4008 1.3450 49 1 6.4056 8.6058 -0.1992 50 1 7.6978 10.8841 -2.2680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713514160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:33 Heat of formation + Delta-G solvation = -141.799506 kcal Electronic energy + Delta-G solvation = -30780.646820 eV Core-core repulsion = 26422.965189 eV Total energy + Delta-G solvation = -4357.681631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.54097 -39.58706 -38.41741 -37.60576 -37.22160 -34.82773 -33.86842 -32.16093 -31.58563 -31.10017 -29.57777 -27.45660 -26.71622 -26.38504 -25.24461 -24.23826 -23.63336 -21.39878 -20.68497 -20.19465 -19.01224 -17.98010 -17.74881 -17.44170 -16.92202 -16.68263 -16.19970 -15.78234 -15.59327 -15.40418 -15.28227 -14.87270 -14.55051 -14.48406 -14.38480 -14.25894 -13.78214 -13.64455 -13.31153 -13.02409 -12.92074 -12.71692 -12.44771 -12.22631 -12.02278 -11.91078 -11.72445 -11.55813 -11.44536 -11.19900 -11.06212 -10.95441 -10.91245 -10.64157 -10.31179 -10.30754 -10.19630 -10.18325 -9.79661 -9.47009 -9.27961 -8.44452 -7.94508 -7.87847 -6.37031 -3.78000 2.24105 2.51643 3.19211 3.25380 3.29494 3.36526 3.65579 3.93363 4.02825 4.25986 4.34138 4.42851 4.50544 4.56438 4.59798 4.74848 4.76766 4.89161 4.92770 5.05091 5.12478 5.16341 5.19657 5.22165 5.23597 5.28142 5.29394 5.37445 5.52663 5.60038 5.64047 5.70921 5.78449 5.82784 5.94871 6.00709 6.16257 6.24373 6.32639 6.48050 6.54119 6.68390 7.15575 7.21456 7.23392 7.59435 7.95204 8.10519 8.66122 9.22429 9.59155 10.10693 10.80718 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.002295 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.233580 B =12198.819018 C =13489.605071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.044 3.956 4 C 0.078 3.922 5 H 0.094 0.906 6 O -0.354 6.354 7 C 0.029 3.971 8 C 0.514 3.486 9 O -0.504 6.504 10 N -0.723 5.723 11 C 0.099 3.901 12 C 0.062 3.938 13 H 0.091 0.909 14 C -0.139 4.139 15 C -0.130 4.130 16 C 0.051 3.949 17 N -0.492 5.492 18 C 0.030 3.970 19 C 0.444 3.556 20 O -0.579 6.579 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.900 5.900 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.399 0.601 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.053 0.947 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.939 -24.644 6.315 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.033 4.033 4 C 0.016 3.984 5 H 0.112 0.888 6 O -0.271 6.271 7 C -0.068 4.068 8 C 0.298 3.702 9 O -0.377 6.377 10 N -0.378 5.378 11 C -0.025 4.025 12 C -0.047 4.047 13 H 0.109 0.891 14 C -0.178 4.178 15 C -0.168 4.168 16 C -0.076 4.076 17 N -0.216 5.216 18 C -0.101 4.101 19 C 0.229 3.771 20 O -0.463 6.463 21 N -0.201 5.201 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.233 0.767 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.116 0.884 47 H 0.112 0.888 48 H 0.070 0.930 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.708 -23.519 6.110 26.554 hybrid contribution 0.447 -0.110 -0.342 0.574 sum -10.261 -23.629 5.768 26.399 Atomic orbital electron populations 1.22790 0.80380 1.02999 1.00403 1.87837 1.20301 1.27033 1.95521 1.23047 0.92444 0.85834 1.02022 1.21894 0.92483 0.93560 0.90479 0.88810 1.88037 1.87737 1.20275 1.31096 1.22961 1.01144 0.80194 1.02481 1.20076 0.81464 0.86030 0.82675 1.90795 1.38247 1.70261 1.38412 1.45905 1.55143 1.18456 1.18322 1.22279 0.99456 0.82479 0.98301 1.22760 1.00809 0.88654 0.92521 0.89091 1.22902 1.00161 0.97896 0.96827 1.22740 1.01190 0.95275 0.97634 1.23093 0.92498 0.99304 0.92742 1.63510 1.33565 1.18665 1.05891 1.22236 0.99334 0.96288 0.92240 1.19693 0.84151 0.87898 0.85339 1.90501 1.58351 1.68036 1.29393 1.41872 1.55373 1.10946 1.11949 1.19732 1.38193 0.85542 0.99265 0.87883 1.25273 0.97478 1.00402 0.94900 1.69628 1.45130 1.37337 1.02075 0.85810 0.77993 0.82085 0.78499 1.19247 1.20807 1.20770 0.89374 0.93776 0.93707 0.91747 0.91424 0.94157 0.92224 0.89431 0.76654 0.90075 0.90610 0.90930 0.91241 0.90646 0.91009 0.93944 0.88443 0.88833 0.92957 0.77454 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.02 8.83 -40.08 -0.35 -3.37 16 3 C 0.04 0.34 5.57 37.16 0.21 0.55 16 4 C 0.08 0.74 2.91 -27.88 -0.08 0.66 16 5 H 0.09 0.66 7.79 -51.93 -0.40 0.26 16 6 O -0.35 -4.24 9.88 -59.70 -0.59 -4.83 16 7 C 0.03 0.24 10.71 101.05 1.08 1.32 16 8 C 0.51 6.13 7.18 -10.99 -0.08 6.06 16 9 O -0.50 -8.66 16.50 -14.30 -0.24 -8.89 16 10 N -0.72 -6.68 5.23 -60.29 -0.32 -6.99 16 11 C 0.10 1.16 3.75 -4.05 -0.02 1.14 16 12 C 0.06 0.70 3.51 -66.72 -0.23 0.47 16 13 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.14 -1.30 6.10 -24.91 -0.15 -1.45 16 15 C -0.13 -1.43 7.08 -24.60 -0.17 -1.60 16 16 C 0.05 0.79 5.66 -2.30 -0.01 0.77 16 17 N -0.49 -7.86 4.90 -224.78 -1.10 -8.97 16 18 C 0.03 0.55 4.17 -4.98 -0.02 0.53 16 19 C 0.44 10.60 7.56 -10.99 -0.08 10.51 16 20 O -0.58 -15.59 14.45 5.55 0.08 -15.51 16 21 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 22 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 23 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 24 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 25 N -0.90 -25.13 13.05 55.50 0.72 -24.40 16 26 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.35 7.77 -51.93 -0.40 -0.05 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 36 H 0.06 0.46 6.40 -51.93 -0.33 0.13 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.40 2.34 8.04 -40.82 -0.33 2.01 16 39 H 0.08 1.08 6.22 -51.93 -0.32 0.76 16 40 H 0.08 1.02 7.02 -51.93 -0.36 0.65 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.67 7.81 -51.93 -0.41 0.26 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.04 0.68 7.66 -51.93 -0.40 0.28 16 46 H 0.10 1.77 7.27 -51.93 -0.38 1.39 16 47 H 0.09 1.57 6.13 -51.93 -0.32 1.25 16 48 H 0.05 0.89 6.84 -51.94 -0.36 0.54 16 49 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 50 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 403.07 15.07 6.07 6.07 Total: -1.00 -35.78 403.07 -7.56 -43.33 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -8.07 Total: 9.73 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 1.31 Total: 12.13 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.75 Total: -55.04 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.10 Total: -32.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.78 -7.56 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713514160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.465 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds