Wall clock time and date at job start Wed Apr 1 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00328 * 2 1 4 4 C 1.52996 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47057 * 305.00399 * 4 3 2 6 6 O 1.42898 * 109.47459 * 65.00074 * 4 3 2 7 7 C 1.42894 * 114.00196 * 270.00103 * 6 4 3 8 8 C 1.50707 * 109.47112 * 185.00437 * 4 3 2 9 9 O 1.21282 * 119.99650 * 245.00073 * 8 4 3 10 10 N 1.34768 * 120.00158 * 64.99714 * 8 4 3 11 11 C 1.46494 * 120.00196 * 180.02562 * 10 8 4 12 12 C 1.52999 * 109.47508 * 185.05565 * 11 10 8 13 13 H 1.09006 * 109.87481 * 303.45054 * 12 11 10 14 14 C 1.54323 * 109.89107 * 64.64925 * 12 11 10 15 15 C 1.55138 * 103.01705 * 141.69383 * 14 12 11 16 16 C 1.54905 * 101.65281 * 324.34545 * 15 14 12 17 17 N 1.47446 * 109.89206 * 182.42230 * 12 11 10 18 18 C 1.46898 * 110.99531 * 3.84821 * 17 12 11 19 19 C 1.50702 * 109.46742 * 172.13422 * 18 17 12 20 20 O 1.21294 * 119.99942 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00167 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00175 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00218 * 359.97438 * 22 21 19 24 24 C 1.38962 * 119.99737 * 179.72428 * 22 21 19 25 25 N 1.31408 * 120.00051 * 0.27120 * 24 22 21 26 26 Si 1.86795 * 119.99697 * 180.27252 * 24 22 21 27 27 H 1.48507 * 109.47370 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47199 * 119.99993 * 26 24 22 29 29 H 1.48497 * 109.47235 * 239.99738 * 26 24 22 30 30 H 1.08992 * 109.47332 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46632 * 299.99825 * 1 2 3 32 32 H 1.08999 * 109.46950 * 59.99406 * 1 2 3 33 33 H 1.09007 * 109.46718 * 60.00441 * 3 2 1 34 34 H 1.08994 * 109.47348 * 300.00632 * 3 2 1 35 35 H 1.08997 * 109.47297 * 299.99744 * 7 6 4 36 36 H 1.09006 * 109.47028 * 59.99715 * 7 6 4 37 37 H 1.09004 * 109.47239 * 179.97438 * 7 6 4 38 38 H 0.97010 * 120.00155 * 0.02562 * 10 8 4 39 39 H 1.09006 * 109.47158 * 65.05243 * 11 10 8 40 40 H 1.09002 * 109.47122 * 305.05516 * 11 10 8 41 41 H 1.08994 * 110.70403 * 260.07677 * 14 12 11 42 42 H 1.08993 * 110.70184 * 23.30726 * 14 12 11 43 43 H 1.08995 * 110.99191 * 82.43992 * 15 14 12 44 44 H 1.09006 * 110.98729 * 206.25785 * 15 14 12 45 45 H 1.08999 * 110.37494 * 278.24265 * 16 15 14 46 46 H 1.09001 * 110.37232 * 155.90490 * 16 15 14 47 47 H 1.09002 * 109.47029 * 52.13843 * 18 17 12 48 48 H 1.08989 * 109.47435 * 292.13259 * 18 17 12 49 49 H 0.97006 * 119.99908 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99681 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8514 0.5680 0.8409 6 8 3.9649 0.5795 -1.2219 7 6 4.0463 -0.8460 -1.1672 8 6 4.1482 2.5559 0.1233 9 8 4.8064 3.0105 -0.7883 10 7 3.9646 3.2769 1.2470 11 6 4.5597 4.6101 1.3672 12 6 4.3088 5.1556 2.7745 13 1 3.2389 5.1647 2.9831 14 6 5.0426 4.2830 3.8145 15 6 5.5555 5.3237 4.8444 16 6 5.9026 6.5245 3.9294 17 7 4.8535 6.5211 2.8877 18 6 5.3888 6.9827 1.5999 19 6 5.7578 8.4402 1.7028 20 8 5.5908 9.0359 2.7461 21 7 6.2724 9.0821 0.6353 22 6 6.6086 10.4079 0.7291 23 1 6.4607 10.9381 1.6582 24 6 7.1445 11.0681 -0.3700 25 7 7.3241 10.4231 -1.5007 26 14 7.6097 12.8725 -0.2400 27 1 7.3102 13.3636 1.1292 28 1 9.0600 13.0311 -0.5170 29 1 6.8282 13.6577 -1.2289 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6887 1.8463 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 4.7575 -1.1400 -0.3953 36 1 3.0645 -1.2573 -0.9324 37 1 4.3786 -1.2283 -2.1324 38 1 3.4384 2.9131 1.9762 39 1 4.1079 5.2772 0.6330 40 1 5.6330 4.5464 1.1883 41 1 4.3529 3.5825 4.2852 42 1 5.8764 3.7535 3.3536 43 1 4.7728 5.5879 5.5553 44 1 6.4427 4.9572 5.3609 45 1 6.8854 6.3866 3.4787 46 1 5.8714 7.4550 4.4963 47 1 4.6333 6.8530 0.8250 48 1 6.2744 6.4008 1.3450 49 1 6.4056 8.6058 -0.1992 50 1 7.6978 10.8841 -2.2680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713514160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:32 Heat of formation + Delta-G solvation = -171.495948 kcal Electronic energy + Delta-G solvation = -30781.934554 eV Core-core repulsion = 26422.965189 eV Total energy + Delta-G solvation = -4358.969365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.52039 -40.75717 -39.47864 -39.00998 -37.92199 -36.04554 -35.72839 -33.52254 -33.00589 -32.40316 -30.47941 -28.33444 -27.97993 -27.02824 -26.12697 -26.05268 -24.37349 -22.48327 -21.64906 -21.42281 -20.59322 -19.83535 -18.64863 -18.41981 -17.92659 -17.57587 -17.02619 -16.90573 -16.65059 -16.39631 -16.34131 -16.17063 -15.96966 -15.79387 -15.60198 -15.32628 -14.92158 -14.81149 -14.41784 -14.22156 -14.04054 -13.66263 -13.48906 -13.44850 -13.35184 -12.98275 -12.85466 -12.76019 -12.43186 -12.42093 -12.28079 -12.16507 -12.11675 -11.98187 -11.93247 -11.58358 -11.49709 -11.14530 -10.80687 -10.52868 -10.35565 -10.19386 -10.02551 -9.25666 -8.47323 -5.96671 1.35221 1.36555 1.39950 1.54915 1.68599 2.02870 2.27235 2.67737 2.75176 3.02998 3.18174 3.34006 3.51650 3.67914 3.74781 3.80754 3.84663 3.94039 4.16824 4.22300 4.25680 4.27612 4.36978 4.42171 4.42987 4.53087 4.55558 4.57532 4.59116 4.63048 4.69842 4.77246 4.88489 4.95686 4.95989 5.03716 5.07329 5.20744 5.24963 5.38242 5.39731 5.82780 5.99375 6.00702 6.07787 6.10959 6.44691 6.58493 7.11400 7.11465 7.54336 8.09569 8.70512 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.002295 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.233580 B =12198.819018 C =13489.605071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.048 3.952 4 C 0.080 3.920 5 H 0.124 0.876 6 O -0.392 6.392 7 C 0.027 3.973 8 C 0.514 3.486 9 O -0.566 6.566 10 N -0.700 5.700 11 C 0.106 3.894 12 C 0.066 3.934 13 H 0.113 0.887 14 C -0.128 4.128 15 C -0.119 4.119 16 C 0.045 3.955 17 N -0.512 5.512 18 C 0.047 3.953 19 C 0.441 3.559 20 O -0.612 6.612 21 N -0.577 5.577 22 C -0.330 4.330 23 H 0.081 0.919 24 C -0.017 4.017 25 N -0.923 5.923 26 Si 0.995 3.005 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.421 0.579 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.028 0.972 46 H 0.060 0.940 47 H 0.107 0.893 48 H 0.062 0.938 49 H 0.394 0.606 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.188 -26.714 7.684 30.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C -0.029 4.029 4 C 0.019 3.981 5 H 0.141 0.859 6 O -0.310 6.310 7 C -0.069 4.069 8 C 0.299 3.701 9 O -0.443 6.443 10 N -0.355 5.355 11 C -0.019 4.019 12 C -0.042 4.042 13 H 0.131 0.869 14 C -0.167 4.167 15 C -0.157 4.157 16 C -0.082 4.082 17 N -0.236 5.236 18 C -0.084 4.084 19 C 0.228 3.772 20 O -0.498 6.498 21 N -0.214 5.214 22 C -0.460 4.460 23 H 0.099 0.901 24 C -0.216 4.216 25 N -0.564 5.564 26 Si 0.819 3.181 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.259 0.741 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.132 0.868 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.125 0.875 48 H 0.080 0.920 49 H 0.227 0.773 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.998 -25.638 7.517 29.288 hybrid contribution 0.783 0.483 -0.727 1.173 sum -11.215 -25.155 6.790 28.367 Atomic orbital electron populations 1.22967 0.79055 1.04124 1.00971 1.87805 1.21695 1.26819 1.95632 1.22973 0.91229 0.86149 1.02552 1.21969 0.93393 0.92003 0.90756 0.85871 1.87992 1.88168 1.22127 1.32702 1.23083 1.01891 0.78589 1.03329 1.20623 0.80426 0.86864 0.82146 1.90772 1.41129 1.71785 1.40623 1.45627 1.54356 1.17164 1.18359 1.22017 0.98369 0.83419 0.98121 1.22864 1.01905 0.86543 0.92856 0.86933 1.22911 1.00748 0.97544 0.95449 1.22692 1.02286 0.93419 0.97281 1.23029 0.91958 0.99930 0.93306 1.63431 1.33502 1.22044 1.04635 1.22028 1.00200 0.92020 0.94150 1.20737 0.82257 0.90093 0.84104 1.90472 1.59224 1.69603 1.30502 1.41976 1.56234 1.10593 1.12614 1.19705 1.40272 0.86912 0.99080 0.90119 1.26109 0.96719 1.04597 0.94202 1.69702 1.45180 1.38988 1.02564 0.84836 0.78168 0.76746 0.78361 1.19569 1.19622 1.19594 0.88061 0.92327 0.94021 0.88899 0.93214 0.92803 0.91636 0.89039 0.74082 0.91887 0.92436 0.86826 0.91160 0.89778 0.89346 0.95382 0.92180 0.87497 0.92028 0.77297 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.44 16 2 O -0.40 -5.24 8.83 -144.34 -1.27 -6.52 16 3 C 0.05 0.64 5.57 71.98 0.40 1.04 16 4 C 0.08 1.36 2.91 29.85 0.09 1.45 16 5 H 0.12 1.32 7.79 -2.39 -0.02 1.30 16 6 O -0.39 -9.10 9.88 -125.59 -1.24 -10.34 16 7 C 0.03 0.41 10.71 113.37 1.21 1.62 16 8 C 0.51 11.67 7.18 87.66 0.63 12.30 16 9 O -0.57 -19.78 16.50 15.95 0.26 -19.51 16 10 N -0.70 -11.17 5.23 -463.07 -2.42 -13.59 16 11 C 0.11 2.34 3.75 86.38 0.32 2.66 16 12 C 0.07 1.34 3.51 45.26 0.16 1.50 16 13 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 14 C -0.13 -1.89 6.10 31.78 0.19 -1.70 16 15 C -0.12 -2.30 7.08 31.98 0.23 -2.08 16 16 C 0.05 1.41 5.66 86.77 0.49 1.90 16 17 N -0.51 -16.13 4.90 -865.07 -4.24 -20.37 16 18 C 0.05 1.74 4.17 85.56 0.36 2.10 16 19 C 0.44 21.89 7.56 87.66 0.66 22.56 16 20 O -0.61 -34.47 14.45 -3.07 -0.04 -34.52 16 21 N -0.58 -31.11 5.29 -306.98 -1.62 -32.74 16 22 C -0.33 -19.37 9.68 84.04 0.81 -18.55 16 23 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 24 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 25 N -0.92 -52.08 13.05 21.67 0.28 -51.80 16 26 Si 1.00 44.28 29.55 68.60 2.03 46.31 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.67 7.77 -2.38 -0.02 0.65 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 36 H 0.07 0.90 6.40 -2.38 -0.02 0.88 16 37 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.42 3.10 8.04 -92.70 -0.75 2.35 16 39 H 0.06 1.65 6.22 -2.38 -0.01 1.64 16 40 H 0.06 1.52 7.02 -2.39 -0.02 1.50 16 41 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 1.09 7.81 -2.39 -0.02 1.07 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.09 1.45 8.14 -2.38 -0.02 1.44 16 45 H 0.03 0.93 7.66 -2.39 -0.02 0.91 16 46 H 0.06 2.29 7.27 -2.39 -0.02 2.27 16 47 H 0.11 3.64 6.13 -2.39 -0.01 3.63 16 48 H 0.06 2.15 6.84 -2.39 -0.02 2.14 16 49 H 0.39 20.61 7.90 -92.70 -0.73 19.88 16 50 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -82.35 403.07 -1.51 -83.86 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: -0.51 Total: 33.45 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: 7.27 Total: 25.77 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -8.00 Total: -118.50 kcal Atomic # 8 Polarization: -68.60 SS G_CDS: -2.30 Total: -70.90 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -82.35 -1.51 -83.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713514160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.636 kcal (2) G-P(sol) polarization free energy of solvation -82.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds