Wall clock time and date at job start Wed Apr 1 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47085 * 2 1 4 4 C 1.42900 * 114.00024 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47084 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 H 1.09005 * 109.50507 * 304.90984 * 10 9 8 12 12 C 1.53102 * 109.50372 * 184.78128 * 10 9 8 13 13 N 1.47014 * 109.25481 * 183.21431 * 12 10 9 14 14 C 1.46906 * 110.99542 * 182.39222 * 13 12 10 15 15 C 1.50701 * 109.46684 * 170.32038 * 14 13 12 16 16 O 1.21290 * 120.00418 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99845 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00257 * 179.97438 * 17 15 14 19 19 H 1.08010 * 119.99772 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00340 * 179.97438 * 18 17 15 21 21 N 1.31402 * 119.99733 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99970 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46645 * 90.00066 * 22 20 18 24 24 H 1.48492 * 109.46869 * 210.00124 * 22 20 18 25 25 H 1.48498 * 109.47213 * 329.99892 * 22 20 18 26 26 C 1.47010 * 110.75490 * 58.61680 * 13 12 10 27 27 C 1.53092 * 109.25640 * 301.38216 * 26 13 12 28 28 O 1.43009 * 109.50965 * 64.99694 * 10 9 8 29 29 H 1.08994 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46635 * 299.99995 * 1 2 3 31 31 H 1.08995 * 109.47115 * 59.99823 * 1 2 3 32 32 H 1.08996 * 109.47060 * 240.00291 * 2 1 3 33 33 H 1.09007 * 109.47406 * 119.99581 * 2 1 3 34 34 H 1.09002 * 109.47002 * 60.00104 * 4 3 2 35 35 H 1.09001 * 109.47130 * 300.00205 * 4 3 2 36 36 H 1.09002 * 109.47045 * 60.00217 * 5 4 3 37 37 H 1.09001 * 109.47375 * 300.00142 * 5 4 3 38 38 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 40 40 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 41 41 H 1.08998 * 109.50972 * 303.15015 * 12 10 9 42 42 H 1.08999 * 109.50456 * 63.28107 * 12 10 9 43 43 H 1.09001 * 109.47257 * 290.31405 * 14 13 12 44 44 H 1.08997 * 109.47427 * 50.32060 * 14 13 12 45 45 H 0.96998 * 119.99783 * 0.02562 * 17 15 14 46 46 H 0.97003 * 120.00197 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.50775 * 181.44380 * 26 13 12 48 48 H 1.09000 * 109.50705 * 61.31358 * 26 13 12 49 49 H 1.08998 * 109.50796 * 296.90976 * 27 26 13 50 50 H 1.09008 * 109.54263 * 176.80456 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 5.3277 3.0574 -0.0001 7 8 6.0151 2.0583 -0.0001 8 7 5.9073 4.2742 -0.0002 9 6 7.3677 4.3899 -0.0008 10 6 7.7622 5.8682 -0.0001 11 1 7.2875 6.3720 -0.8421 12 6 9.2834 5.9914 -0.1210 13 7 9.6627 7.4096 -0.0422 14 6 11.1124 7.5768 -0.2112 15 6 11.4347 9.0411 -0.3629 16 8 10.5445 9.8643 -0.3337 17 7 12.7124 9.4360 -0.5310 18 6 13.0056 10.7680 -0.6696 19 1 12.2128 11.5011 -0.6435 20 6 14.3229 11.1752 -0.8424 21 7 15.2875 10.2834 -0.8735 22 14 14.7224 12.9903 -1.0304 23 1 14.9760 13.5824 0.3076 24 1 15.9319 13.1456 -1.8778 25 1 13.5770 13.6856 -1.6705 26 6 9.2083 8.0009 1.2246 27 6 7.6879 7.8575 1.3320 28 8 7.3353 6.4758 1.2222 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.8340 0.9765 -0.8892 35 1 3.8333 0.9768 0.8908 36 1 3.4222 3.4225 0.8894 37 1 3.4230 3.4215 -0.8906 38 1 5.3574 5.0733 -0.0006 39 1 7.7702 3.9065 -0.8910 40 1 7.7708 3.9063 0.8890 41 1 9.7588 5.4418 0.6915 42 1 9.6069 5.5806 -1.0773 43 1 11.6283 7.1800 0.6632 44 1 11.4390 7.0388 -1.1011 45 1 13.4243 8.7776 -0.5548 46 1 16.2070 10.5676 -0.9946 47 1 9.4771 9.0569 1.2506 48 1 9.6824 7.4834 2.0586 49 1 7.2116 8.4196 0.5287 50 1 7.3523 8.2433 2.2947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714461980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:12 Heat of formation + Delta-G solvation = -162.991920 kcal Electronic energy + Delta-G solvation = -29336.078397 eV Core-core repulsion = 24977.477794 eV Total energy + Delta-G solvation = -4358.600603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.27495 -39.59805 -38.32651 -38.07487 -35.53970 -34.96373 -33.86639 -32.98854 -31.75051 -31.30076 -30.51859 -29.07221 -27.04272 -25.22076 -23.91058 -23.81581 -23.19561 -22.31986 -20.89844 -20.13207 -19.25187 -17.94212 -17.77434 -16.93756 -16.77126 -16.47228 -16.38606 -15.98328 -15.84657 -15.48166 -15.10616 -14.77613 -14.75916 -14.47944 -14.14628 -14.11022 -13.94678 -13.60593 -13.48563 -13.30161 -13.02018 -12.79780 -12.43447 -12.31980 -12.19580 -11.98746 -11.74414 -11.54930 -11.50884 -11.45904 -11.27725 -11.23370 -10.96180 -10.56226 -10.42055 -10.26054 -10.20850 -10.00782 -9.72154 -9.51546 -9.36200 -8.51687 -8.05099 -7.95841 -6.45752 -3.86816 2.33675 2.62838 3.14778 3.24016 3.29432 3.42256 3.58904 3.81793 3.86745 4.18417 4.38042 4.59185 4.62675 4.65572 4.69414 4.80506 4.87208 4.93124 4.96135 5.00080 5.10393 5.14906 5.20495 5.25254 5.32792 5.33912 5.39787 5.40632 5.49234 5.49806 5.52779 5.60251 5.67878 5.75086 5.79704 5.83629 6.06925 6.10800 6.20571 6.26205 6.76563 7.03514 7.09452 7.17991 7.24346 7.51225 7.90407 8.01574 8.56749 9.13598 9.49457 10.00660 10.71855 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.043059 B = 0.001422 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.107259 B =19682.225091 C =19993.046618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.140 4.140 6 C 0.518 3.482 7 O -0.545 6.545 8 N -0.721 5.721 9 C 0.129 3.871 10 C 0.084 3.916 11 H 0.075 0.925 12 C 0.025 3.975 13 N -0.512 5.512 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.580 6.580 17 N -0.562 5.562 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.024 3.976 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.269 1.269 26 C 0.014 3.986 27 C 0.069 3.931 28 O -0.385 6.385 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.406 0.594 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.115 0.885 48 H 0.032 0.968 49 H 0.062 0.938 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.058 -17.615 2.408 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.179 4.179 6 C 0.304 3.696 7 O -0.423 6.423 8 N -0.372 5.372 9 C 0.005 3.995 10 C 0.026 3.974 11 H 0.093 0.907 12 C -0.104 4.104 13 N -0.237 5.237 14 C -0.085 4.085 15 C 0.228 3.772 16 O -0.464 6.464 17 N -0.198 5.198 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.178 4.178 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.114 4.114 27 C -0.008 4.008 28 O -0.304 6.304 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.241 0.759 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.133 0.867 48 H 0.051 0.949 49 H 0.080 0.920 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.384 -17.431 2.158 28.453 hybrid contribution 1.424 0.406 0.346 1.521 sum -20.961 -17.025 2.504 27.120 Atomic orbital electron populations 1.21751 0.93651 1.02310 1.03171 1.22457 0.95531 0.83490 1.00315 1.87807 1.21110 1.26852 1.95592 1.22097 0.80702 0.95309 1.01771 1.21459 0.92309 0.98304 1.05876 1.20379 0.90140 0.83192 0.75863 1.90724 1.65400 1.36424 1.49762 1.45848 1.07770 1.08420 1.75196 1.21363 0.80274 0.94493 1.03338 1.22305 0.94207 0.92506 0.88409 0.90681 1.22674 0.95179 0.90254 1.02266 1.61784 1.13964 1.12920 1.35025 1.21874 0.87604 0.97422 1.01613 1.19680 0.83668 0.89152 0.84670 1.90471 1.46098 1.53937 1.55900 1.41863 1.06061 1.08769 1.63126 1.19700 0.93313 0.83327 1.46665 0.87878 1.25262 0.95227 1.00103 0.97230 1.69607 1.00617 1.34074 1.49892 0.85858 0.78062 0.82095 0.78288 1.20406 1.20895 1.19382 1.22971 0.95545 1.03662 0.89228 1.22686 0.94349 0.81478 1.02285 1.87942 1.79151 1.25040 1.38306 0.91055 0.91817 0.91811 0.93270 0.93273 0.92402 0.92401 0.87849 0.87900 0.75878 0.89694 0.90501 0.93843 0.89464 0.93255 0.89140 0.77467 0.91819 0.86694 0.94930 0.91968 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.39 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.39 -3.42 10.34 -35.23 -0.36 -3.79 16 4 C 0.08 0.65 5.23 37.16 0.19 0.85 16 5 C -0.14 -1.00 6.07 -27.88 -0.17 -1.16 16 6 C 0.52 5.07 7.83 -10.98 -0.09 4.98 16 7 O -0.55 -7.35 15.98 5.56 0.09 -7.26 16 8 N -0.72 -6.26 5.50 -60.29 -0.33 -6.59 16 9 C 0.13 1.26 5.35 -4.04 -0.02 1.24 16 10 C 0.08 0.91 2.84 -26.68 -0.08 0.84 16 11 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 12 C 0.03 0.31 4.93 -3.71 -0.02 0.29 16 13 N -0.51 -8.16 4.47 -235.75 -1.05 -9.21 16 14 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 15 C 0.44 10.11 7.49 -10.98 -0.08 10.03 16 16 O -0.58 -14.99 13.90 5.55 0.08 -14.91 16 17 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 19 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 21 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 22 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 26 C 0.01 0.21 5.29 -3.72 -0.02 0.19 16 27 C 0.07 0.87 7.01 37.21 0.26 1.13 16 28 O -0.39 -4.69 10.42 -35.23 -0.37 -5.06 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.41 2.78 8.47 -40.82 -0.35 2.43 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 43 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 44 H 0.09 1.40 8.04 -51.93 -0.42 0.99 16 45 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 47 H 0.12 2.15 5.85 -51.93 -0.30 1.85 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 LS Contribution 411.55 15.07 6.20 6.20 Total: -1.00 -33.01 411.55 -8.26 -41.27 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -8.50 Total: 9.48 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 0.34 Total: 11.58 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.72 Total: -53.19 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.57 Total: -31.02 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.01 -8.26 -41.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714461980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.720 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds