Wall clock time and date at job start Wed Apr 1 2020 02:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47429 * 2 1 4 4 C 1.42894 * 114.00193 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46990 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46873 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00580 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00000 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00364 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47237 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.50628 * 60.08750 * 10 9 8 12 12 C 1.53102 * 109.50903 * 180.21680 * 10 9 8 13 13 N 1.47003 * 109.26065 * 176.78148 * 12 10 9 14 14 C 1.46900 * 111.00043 * 177.60701 * 13 12 10 15 15 C 1.50701 * 109.47187 * 190.00098 * 14 13 12 16 16 O 1.21293 * 120.00257 * 6.27550 * 15 14 13 17 17 N 1.34775 * 120.00150 * 186.28519 * 15 14 13 18 18 C 1.37091 * 120.00431 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99767 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00512 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00335 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46774 * 60.00266 * 22 20 18 24 24 H 1.48493 * 109.46966 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.46997 * 300.00539 * 22 20 18 26 26 C 1.47013 * 110.75860 * 301.38808 * 13 12 10 27 27 C 1.53097 * 109.25544 * 58.61114 * 26 13 12 28 28 O 1.43015 * 109.50794 * 300.00304 * 10 9 8 29 29 H 1.09002 * 109.46910 * 60.00711 * 1 2 3 30 30 H 1.09002 * 109.47148 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47518 * 300.00398 * 1 2 3 32 32 H 1.08996 * 109.47518 * 239.99602 * 2 1 3 33 33 H 1.09009 * 109.46824 * 119.99662 * 2 1 3 34 34 H 1.09002 * 109.47491 * 59.99730 * 4 3 2 35 35 H 1.09005 * 109.47015 * 299.99854 * 4 3 2 36 36 H 1.08999 * 109.47299 * 60.00120 * 5 4 3 37 37 H 1.08995 * 109.47174 * 299.99359 * 5 4 3 38 38 H 0.97012 * 119.99831 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.47281 * 300.00019 * 9 8 6 40 40 H 1.09002 * 109.47102 * 60.00119 * 9 8 6 41 41 H 1.08999 * 109.50619 * 296.72614 * 12 10 9 42 42 H 1.09007 * 109.50338 * 56.84512 * 12 10 9 43 43 H 1.08992 * 109.47168 * 310.00072 * 14 13 12 44 44 H 1.08998 * 109.46962 * 70.00418 * 14 13 12 45 45 H 0.97004 * 119.99828 * 359.97438 * 17 15 14 46 46 H 0.97000 * 119.99802 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.50207 * 298.68158 * 26 13 12 48 48 H 1.08992 * 109.51336 * 178.55202 * 26 13 12 49 49 H 1.09008 * 109.50342 * 183.22271 * 27 26 13 50 50 H 1.08999 * 109.50938 * 63.09392 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3277 3.0573 0.0011 7 8 6.0151 2.0582 0.0029 8 7 5.9073 4.2740 0.0003 9 6 7.3677 4.3897 0.0009 10 6 7.7622 5.8680 0.0003 11 1 7.3606 6.3522 0.8904 12 6 9.2884 5.9899 -0.0044 13 7 9.6612 7.4097 -0.0829 14 6 11.1201 7.5745 -0.0328 15 6 11.4553 9.0344 0.1320 16 8 10.5701 9.8431 0.3151 17 7 12.7389 9.4417 0.0758 18 6 13.0440 10.7697 0.2263 19 1 12.2557 11.4897 0.3895 20 6 14.3673 11.1895 0.1689 21 7 15.3264 10.3134 -0.0302 22 14 14.7830 12.9992 0.3732 23 1 14.3155 13.4673 1.7027 24 1 16.2529 13.1838 0.2727 25 1 14.1108 13.7848 -0.6927 26 6 9.1023 8.0291 -1.2934 27 6 7.5781 7.8867 -1.2756 28 8 7.2346 6.5026 -1.1677 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8341 0.9764 -0.8891 35 1 3.8332 0.9767 0.8909 36 1 3.4222 3.4224 0.8894 37 1 3.4231 3.4213 -0.8906 38 1 5.3575 5.0733 -0.0008 39 1 7.7701 3.9071 0.8915 40 1 7.7710 3.9054 -0.8884 41 1 9.6909 5.5579 0.9118 42 1 9.6932 5.4591 -0.8662 43 1 11.5204 7.0123 0.8108 44 1 11.5596 7.2030 -0.9585 45 1 13.4469 8.7949 -0.0704 46 1 16.2503 10.6063 -0.0699 47 1 9.5041 7.5309 -2.1757 48 1 9.3689 9.0856 -1.3181 49 1 7.1638 8.2936 -2.1982 50 1 7.1716 8.4302 -0.4226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714461981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:16 Heat of formation + Delta-G solvation = -163.297840 kcal Electronic energy + Delta-G solvation = -29345.354601 eV Core-core repulsion = 24986.740732 eV Total energy + Delta-G solvation = -4358.613868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.27734 -39.59787 -38.32444 -38.06863 -35.54869 -34.95376 -33.85969 -32.98812 -31.75971 -31.28965 -30.52070 -29.08295 -27.05134 -25.21770 -23.90877 -23.83332 -23.19495 -22.31799 -20.87568 -20.15462 -19.23390 -17.94136 -17.77207 -16.94053 -16.78394 -16.46877 -16.37015 -15.99149 -15.86007 -15.48036 -15.13342 -14.77080 -14.74043 -14.49201 -14.14905 -14.11307 -13.93364 -13.60832 -13.45519 -13.33378 -13.02101 -12.79675 -12.42365 -12.31327 -12.19574 -12.00253 -11.75200 -11.54802 -11.50772 -11.45815 -11.29147 -11.22015 -10.94416 -10.58221 -10.47155 -10.25284 -10.20189 -10.00675 -9.72578 -9.50537 -9.35377 -8.51482 -8.05169 -7.97074 -6.45300 -3.86440 2.34014 2.62937 3.17226 3.23571 3.27374 3.41227 3.59225 3.82789 3.85973 4.18440 4.38510 4.59263 4.62889 4.65715 4.69038 4.79337 4.87110 4.93259 4.96209 5.00178 5.10513 5.13067 5.20487 5.25320 5.31752 5.33837 5.39852 5.40798 5.49193 5.49593 5.52352 5.58982 5.67917 5.74197 5.79489 5.83757 6.05763 6.10025 6.19527 6.23138 6.76706 7.02021 7.08243 7.18662 7.22766 7.51335 7.90970 8.01775 8.57353 9.13980 9.49974 10.01392 10.72252 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.046271 B = 0.001422 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.983452 B =19692.606667 C =20032.317715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.139 4.139 6 C 0.518 3.482 7 O -0.546 6.546 8 N -0.720 5.720 9 C 0.130 3.870 10 C 0.084 3.916 11 H 0.076 0.924 12 C 0.026 3.974 13 N -0.512 5.512 14 C 0.046 3.954 15 C 0.442 3.558 16 O -0.579 6.579 17 N -0.562 5.562 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.024 3.976 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.016 3.984 27 C 0.069 3.931 28 O -0.385 6.385 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.407 0.593 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.034 0.966 48 H 0.109 0.891 49 H 0.097 0.903 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.243 -17.653 -1.171 28.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.179 4.179 6 C 0.304 3.696 7 O -0.424 6.424 8 N -0.372 5.372 9 C 0.006 3.994 10 C 0.025 3.975 11 H 0.094 0.906 12 C -0.103 4.103 13 N -0.236 5.236 14 C -0.085 4.085 15 C 0.227 3.773 16 O -0.463 6.463 17 N -0.199 5.199 18 C -0.431 4.431 19 H 0.121 0.879 20 C -0.178 4.178 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.111 4.111 27 C -0.008 4.008 28 O -0.304 6.304 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.242 0.758 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.127 0.873 49 H 0.115 0.885 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.539 -17.482 -0.793 28.535 hybrid contribution 1.389 0.438 -0.520 1.546 sum -21.150 -17.044 -1.312 27.195 Atomic orbital electron populations 1.21751 0.93652 1.02310 1.03171 1.22455 0.95530 0.83493 1.00314 1.87805 1.21113 1.26850 1.95591 1.22098 0.80699 0.95314 1.01766 1.21456 0.92315 0.98293 1.05875 1.20380 0.90141 0.83195 0.75874 1.90723 1.65393 1.36438 1.49800 1.45825 1.07757 1.08433 1.75140 1.21370 0.80351 0.94417 1.03298 1.22318 0.93277 0.92212 0.89645 0.90644 1.22671 0.95236 0.90229 1.02201 1.61766 1.10752 1.12050 1.39076 1.21881 0.87558 0.97545 1.01506 1.19686 0.83703 0.89054 0.84814 1.90495 1.46758 1.54699 1.54338 1.41865 1.05829 1.09287 1.62897 1.19650 0.93005 0.83923 1.46495 0.87940 1.25261 0.95239 1.00109 0.97192 1.69603 1.00606 1.34546 1.49467 0.85918 0.77135 0.82058 0.79117 1.19867 1.20954 1.19900 1.22900 0.95124 1.03049 0.90075 1.22682 0.94287 0.81425 1.02381 1.87932 1.74809 1.24256 1.43423 0.91817 0.91057 0.91812 0.93274 0.93275 0.92410 0.92400 0.87908 0.87847 0.75802 0.89719 0.90579 0.89437 0.93840 0.89080 0.93341 0.77481 0.91772 0.94806 0.87253 0.88476 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.15 0.38 -0.39 16 2 C 0.06 0.38 6.66 37.15 0.25 0.63 16 3 O -0.39 -3.43 10.34 -35.23 -0.36 -3.79 16 4 C 0.08 0.65 5.23 37.16 0.19 0.85 16 5 C -0.14 -1.00 6.07 -27.88 -0.17 -1.17 16 6 C 0.52 5.07 7.83 -10.98 -0.09 4.99 16 7 O -0.55 -7.36 15.98 5.56 0.09 -7.27 16 8 N -0.72 -6.27 5.45 -60.30 -0.33 -6.60 16 9 C 0.13 1.26 5.37 -4.04 -0.02 1.24 16 10 C 0.08 0.91 2.89 -26.68 -0.08 0.83 16 11 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 12 C 0.03 0.32 4.93 -3.71 -0.02 0.30 16 13 N -0.51 -8.14 4.42 -235.76 -1.04 -9.18 16 14 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 15 C 0.44 10.12 7.35 -10.99 -0.08 10.04 16 16 O -0.58 -15.06 14.25 5.55 0.08 -14.99 16 17 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 18 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 19 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 21 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 22 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C 0.02 0.25 5.30 -3.71 -0.02 0.23 16 27 C 0.07 0.87 7.01 37.21 0.26 1.13 16 28 O -0.39 -4.62 10.22 -35.23 -0.36 -4.98 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.29 8.14 -51.92 -0.42 -0.14 16 34 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.41 2.83 8.35 -40.81 -0.34 2.49 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 44 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 45 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.11 2.03 6.10 -51.93 -0.32 1.72 16 49 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 50 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 411.67 15.07 6.20 6.20 Total: -1.00 -33.08 411.67 -8.25 -41.33 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -8.51 Total: 9.42 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 0.34 Total: 11.59 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.70 Total: -53.23 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.56 Total: -31.03 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.08 -8.25 -41.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714461981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.971 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds