Wall clock time and date at job start Wed Apr 1 2020 02:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 O 1.42899 * 109.47229 * 239.99788 * 2 1 3 5 5 C 1.42906 * 114.00147 * 210.00113 * 4 2 1 6 6 C 1.50702 * 109.47285 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99768 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99698 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99496 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46870 * 180.02562 * 9 8 6 11 11 H 1.09005 * 109.50960 * 304.91404 * 10 9 8 12 12 C 1.53096 * 109.50719 * 184.78425 * 10 9 8 13 13 N 1.47013 * 109.26064 * 183.21451 * 12 10 9 14 14 C 1.46897 * 111.00337 * 182.39151 * 13 12 10 15 15 C 1.50702 * 109.47454 * 170.00649 * 14 13 12 16 16 O 1.21296 * 119.99570 * 353.80255 * 15 14 13 17 17 N 1.34773 * 119.99835 * 173.80618 * 15 14 13 18 18 C 1.37095 * 119.99508 * 179.97438 * 17 15 14 19 19 H 1.08006 * 120.00514 * 0.02562 * 18 17 15 20 20 C 1.38955 * 120.00206 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99626 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00337 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46836 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47228 * 120.00065 * 22 20 18 25 25 H 1.48499 * 109.46736 * 239.99702 * 22 20 18 26 26 C 1.47019 * 110.74977 * 58.61454 * 13 12 10 27 27 C 1.53088 * 109.25791 * 301.38456 * 26 13 12 28 28 O 1.43013 * 109.26173 * 56.85275 * 27 26 13 29 29 H 1.09007 * 109.46624 * 60.00337 * 1 2 3 30 30 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47039 * 300.00537 * 1 2 3 32 32 H 1.09000 * 109.47272 * 119.99785 * 2 1 3 33 33 H 1.08995 * 109.47609 * 59.99812 * 3 2 1 34 34 H 1.09007 * 109.47321 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47103 * 299.99369 * 3 2 1 36 36 H 1.09000 * 109.46597 * 300.00081 * 5 4 2 37 37 H 1.08997 * 109.46828 * 59.99803 * 5 4 2 38 38 H 0.96991 * 120.00419 * 359.97438 * 8 6 5 39 39 H 1.08993 * 109.47300 * 299.99877 * 9 8 6 40 40 H 1.09001 * 109.46904 * 60.00388 * 9 8 6 41 41 H 1.09003 * 109.50460 * 303.15094 * 12 10 9 42 42 H 1.09000 * 109.50623 * 63.27841 * 12 10 9 43 43 H 1.09003 * 109.46968 * 290.01046 * 14 13 12 44 44 H 1.09001 * 109.47056 * 50.00357 * 14 13 12 45 45 H 0.96995 * 120.00215 * 0.02562 * 17 15 14 46 46 H 0.97003 * 120.00306 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.50368 * 181.45032 * 26 13 12 48 48 H 1.09005 * 109.50259 * 61.32286 * 26 13 12 49 49 H 1.09005 * 109.50942 * 296.91490 * 27 26 13 50 50 H 1.09002 * 109.54045 * 176.80235 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.2660 -1.3246 -0.9885 6 6 3.6700 -1.9979 -2.2748 7 8 2.9503 -1.9270 -3.2484 8 7 4.8310 -2.6789 -2.3432 9 6 5.2234 -3.3339 -3.5935 10 6 6.5715 -4.0318 -3.4023 11 1 7.3061 -3.3118 -3.0415 12 6 7.0393 -4.6148 -4.7384 13 7 8.2960 -5.3496 -4.5333 14 6 8.8100 -5.8784 -5.8038 15 6 10.2065 -6.4070 -5.5997 16 8 10.7654 -6.2483 -4.5349 17 7 10.8343 -7.0558 -6.6003 18 6 12.1049 -7.5361 -6.4148 19 1 12.6026 -7.3949 -5.4667 20 6 12.7526 -8.2046 -7.4465 21 7 12.1473 -8.3760 -8.6003 22 14 14.4835 -8.8598 -7.1935 23 1 14.9380 -8.5385 -5.8168 24 1 14.4886 -10.3322 -7.3861 25 1 15.4001 -8.2288 -8.1768 26 6 8.1150 -6.4267 -3.5491 27 6 7.6364 -5.8254 -2.2250 28 8 6.4311 -5.0891 -2.4495 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 4.0199 -0.5874 -0.7124 37 1 3.1809 -2.0707 -0.1985 38 1 5.4067 -2.7353 -1.5647 39 1 4.4693 -4.0708 -3.8699 40 1 5.3089 -2.5877 -4.3833 41 1 6.2795 -5.2939 -5.1251 42 1 7.2026 -3.8064 -5.4511 43 1 8.1633 -6.6847 -6.1499 44 1 8.8280 -5.0822 -6.5480 45 1 10.3876 -7.1823 -7.4519 46 1 12.5991 -8.8430 -9.3205 47 1 9.0635 -6.9408 -3.3936 48 1 7.3724 -7.1348 -3.9169 49 1 8.4025 -5.1580 -1.8303 50 1 7.4463 -6.6251 -1.5091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714461996.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:08 Heat of formation + Delta-G solvation = -157.556156 kcal Electronic energy + Delta-G solvation = -29627.479257 eV Core-core repulsion = 25269.114366 eV Total energy + Delta-G solvation = -4358.364890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25538 -39.62568 -38.39903 -38.03868 -35.51262 -34.93160 -33.86009 -33.21181 -31.81613 -31.28910 -29.20711 -28.56823 -27.63809 -26.38625 -24.95918 -23.83677 -22.51968 -21.76282 -21.07372 -20.23902 -19.24087 -17.93691 -17.60527 -17.43788 -16.75108 -16.46430 -16.11208 -15.96626 -15.74073 -15.18979 -15.08797 -14.86434 -14.71752 -14.34524 -14.11359 -13.98938 -13.64605 -13.54464 -13.34242 -13.33555 -13.15250 -12.71015 -12.60185 -12.40059 -12.34144 -12.04173 -11.86825 -11.75088 -11.55170 -11.29168 -11.23940 -11.17636 -10.96650 -10.57024 -10.37452 -10.26389 -10.10848 -10.04947 -9.71807 -9.52466 -9.34505 -8.51444 -8.05188 -7.97044 -6.45526 -3.86577 2.36002 2.45752 3.13420 3.24424 3.31076 3.49452 3.61001 3.83117 3.85880 4.18388 4.33362 4.50722 4.56474 4.68331 4.69004 4.72566 4.80108 4.82851 4.93237 5.00068 5.13641 5.15369 5.20497 5.25392 5.32062 5.34276 5.35216 5.39779 5.49871 5.52118 5.59152 5.73463 5.74539 5.77396 5.79731 5.83934 6.05458 6.10342 6.19324 6.23095 6.68410 7.02347 7.08397 7.20410 7.23273 7.51618 7.96010 8.02138 8.57177 9.14050 9.50026 10.01249 10.72149 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.040099 B = 0.001499 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.106899 B =18672.670867 C =18882.672339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.358 6.358 5 C 0.045 3.955 6 C 0.513 3.487 7 O -0.521 6.521 8 N -0.722 5.722 9 C 0.132 3.868 10 C 0.085 3.915 11 H 0.076 0.924 12 C 0.026 3.974 13 N -0.512 5.512 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.016 3.984 27 C 0.069 3.931 28 O -0.385 6.385 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.405 0.595 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.109 0.891 48 H 0.034 0.966 49 H 0.062 0.938 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.949 13.778 15.739 28.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.035 4.035 6 C 0.298 3.702 7 O -0.396 6.396 8 N -0.376 5.376 9 C 0.008 3.992 10 C 0.026 3.974 11 H 0.094 0.906 12 C -0.104 4.104 13 N -0.237 5.237 14 C -0.085 4.085 15 C 0.228 3.772 16 O -0.463 6.463 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.112 4.112 27 C -0.008 4.008 28 O -0.304 6.304 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.239 0.761 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.128 0.872 48 H 0.052 0.948 49 H 0.081 0.919 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.964 14.126 15.665 28.365 hybrid contribution 0.809 -1.048 -0.467 1.404 sum -18.155 13.078 15.198 27.049 Atomic orbital electron populations 1.21856 0.93230 1.02960 1.02669 1.22182 0.95401 0.92498 0.87812 1.22321 1.01546 0.96701 1.02858 1.88071 1.34563 1.69698 1.35295 1.22215 0.88315 0.97188 0.95823 1.20226 0.81128 0.79027 0.89817 1.90744 1.51619 1.59633 1.37570 1.45738 1.22317 1.54125 1.15421 1.21353 0.95136 0.96313 0.86417 1.22310 0.95842 0.89676 0.89573 0.90646 1.22673 0.91497 0.99113 0.97075 1.61777 1.25783 1.26537 1.09565 1.21885 0.96002 0.99393 0.91227 1.19689 0.87600 0.84106 0.85815 1.90496 1.67571 1.61655 1.26558 1.41880 1.15309 1.49235 1.13526 1.19748 0.90541 1.32105 1.00531 0.87830 1.25269 1.00204 0.97533 0.94883 1.69620 1.38500 1.42543 1.03521 0.85801 0.81620 0.78304 0.78625 1.19210 1.20757 1.20730 1.22904 1.02724 0.92990 0.92565 1.22677 0.86236 0.95499 0.96373 1.87945 1.34567 1.46767 1.61131 0.91556 0.91841 0.91112 0.91995 0.91471 0.92451 0.91530 0.90301 0.90162 0.76080 0.90439 0.89628 0.93777 0.89401 0.93319 0.89065 0.77477 0.91879 0.87249 0.94777 0.91944 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.56 37.16 0.36 -0.53 16 2 C 0.08 0.52 3.34 -26.73 -0.09 0.43 16 3 C -0.18 -0.98 9.53 37.16 0.35 -0.63 16 4 O -0.36 -3.60 9.52 -55.14 -0.52 -4.12 16 5 C 0.04 0.34 6.23 36.01 0.22 0.57 16 6 C 0.51 5.56 7.91 -10.99 -0.09 5.47 16 7 O -0.52 -8.08 16.50 -14.35 -0.24 -8.31 16 8 N -0.72 -6.43 5.50 -60.29 -0.33 -6.76 16 9 C 0.13 1.32 5.35 -4.04 -0.02 1.29 16 10 C 0.08 0.92 2.84 -26.68 -0.08 0.84 16 11 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 12 C 0.03 0.31 4.93 -3.71 -0.02 0.30 16 13 N -0.51 -8.15 4.42 -235.75 -1.04 -9.19 16 14 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 15 C 0.44 10.13 7.35 -10.99 -0.08 10.05 16 16 O -0.58 -15.04 14.25 5.54 0.08 -14.96 16 17 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 18 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 22 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.02 0.25 5.30 -3.71 -0.02 0.23 16 27 C 0.07 0.86 7.01 37.20 0.26 1.12 16 28 O -0.38 -4.64 10.42 -35.23 -0.37 -5.00 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.30 7.79 -51.93 -0.40 -0.10 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.41 7.87 -51.93 -0.41 0.01 16 37 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 38 H 0.40 2.67 8.47 -40.82 -0.35 2.33 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 45 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.11 2.03 6.10 -51.93 -0.32 1.71 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 411.29 15.07 6.20 6.20 Total: -1.00 -34.45 411.29 -8.52 -42.97 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -8.47 Total: 8.90 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 0.53 Total: 12.07 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.71 Total: -53.43 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.05 Total: -32.40 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.45 -8.52 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714461996.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.589 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds