Wall clock time and date at job start Wed Apr 1 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 O 1.42899 * 109.47229 * 239.99788 * 2 1 3 5 5 C 1.42906 * 114.00147 * 210.00113 * 4 2 1 6 6 C 1.50702 * 109.47285 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99768 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99698 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99496 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46870 * 180.02562 * 9 8 6 11 11 H 1.09005 * 109.50960 * 304.91404 * 10 9 8 12 12 C 1.53096 * 109.50719 * 184.78425 * 10 9 8 13 13 N 1.47013 * 109.26064 * 183.21451 * 12 10 9 14 14 C 1.46897 * 111.00337 * 182.39151 * 13 12 10 15 15 C 1.50702 * 109.47454 * 170.00649 * 14 13 12 16 16 O 1.21296 * 119.99570 * 353.80255 * 15 14 13 17 17 N 1.34773 * 119.99835 * 173.80618 * 15 14 13 18 18 C 1.37095 * 119.99508 * 179.97438 * 17 15 14 19 19 H 1.08006 * 120.00514 * 0.02562 * 18 17 15 20 20 C 1.38955 * 120.00206 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99626 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00337 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46836 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47228 * 120.00065 * 22 20 18 25 25 H 1.48499 * 109.46736 * 239.99702 * 22 20 18 26 26 C 1.47019 * 110.74977 * 58.61454 * 13 12 10 27 27 C 1.53088 * 109.25791 * 301.38456 * 26 13 12 28 28 O 1.43013 * 109.26173 * 56.85275 * 27 26 13 29 29 H 1.09007 * 109.46624 * 60.00337 * 1 2 3 30 30 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47039 * 300.00537 * 1 2 3 32 32 H 1.09000 * 109.47272 * 119.99785 * 2 1 3 33 33 H 1.08995 * 109.47609 * 59.99812 * 3 2 1 34 34 H 1.09007 * 109.47321 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47103 * 299.99369 * 3 2 1 36 36 H 1.09000 * 109.46597 * 300.00081 * 5 4 2 37 37 H 1.08997 * 109.46828 * 59.99803 * 5 4 2 38 38 H 0.96991 * 120.00419 * 359.97438 * 8 6 5 39 39 H 1.08993 * 109.47300 * 299.99877 * 9 8 6 40 40 H 1.09001 * 109.46904 * 60.00388 * 9 8 6 41 41 H 1.09003 * 109.50460 * 303.15094 * 12 10 9 42 42 H 1.09000 * 109.50623 * 63.27841 * 12 10 9 43 43 H 1.09003 * 109.46968 * 290.01046 * 14 13 12 44 44 H 1.09001 * 109.47056 * 50.00357 * 14 13 12 45 45 H 0.96995 * 120.00215 * 0.02562 * 17 15 14 46 46 H 0.97003 * 120.00306 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.50368 * 181.45032 * 26 13 12 48 48 H 1.09005 * 109.50259 * 61.32286 * 26 13 12 49 49 H 1.09005 * 109.50942 * 296.91490 * 27 26 13 50 50 H 1.09002 * 109.54045 * 176.80235 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.2660 -1.3246 -0.9885 6 6 3.6700 -1.9979 -2.2748 7 8 2.9503 -1.9270 -3.2484 8 7 4.8310 -2.6789 -2.3432 9 6 5.2234 -3.3339 -3.5935 10 6 6.5715 -4.0318 -3.4023 11 1 7.3061 -3.3118 -3.0415 12 6 7.0393 -4.6148 -4.7384 13 7 8.2960 -5.3496 -4.5333 14 6 8.8100 -5.8784 -5.8038 15 6 10.2065 -6.4070 -5.5997 16 8 10.7654 -6.2483 -4.5349 17 7 10.8343 -7.0558 -6.6003 18 6 12.1049 -7.5361 -6.4148 19 1 12.6026 -7.3949 -5.4667 20 6 12.7526 -8.2046 -7.4465 21 7 12.1473 -8.3760 -8.6003 22 14 14.4835 -8.8598 -7.1935 23 1 14.9380 -8.5385 -5.8168 24 1 14.4886 -10.3322 -7.3861 25 1 15.4001 -8.2288 -8.1768 26 6 8.1150 -6.4267 -3.5491 27 6 7.6364 -5.8254 -2.2250 28 8 6.4311 -5.0891 -2.4495 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 4.0199 -0.5874 -0.7124 37 1 3.1809 -2.0707 -0.1985 38 1 5.4067 -2.7353 -1.5647 39 1 4.4693 -4.0708 -3.8699 40 1 5.3089 -2.5877 -4.3833 41 1 6.2795 -5.2939 -5.1251 42 1 7.2026 -3.8064 -5.4511 43 1 8.1633 -6.6847 -6.1499 44 1 8.8280 -5.0822 -6.5480 45 1 10.3876 -7.1823 -7.4519 46 1 12.5991 -8.8430 -9.3205 47 1 9.0635 -6.9408 -3.3936 48 1 7.3724 -7.1348 -3.9169 49 1 8.4025 -5.1580 -1.8303 50 1 7.4463 -6.6251 -1.5091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714461996.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:07 Heat of formation + Delta-G solvation = -184.979904 kcal Electronic energy + Delta-G solvation = -29628.668440 eV Core-core repulsion = 25269.114366 eV Total energy + Delta-G solvation = -4359.554073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.20392 -40.66763 -39.76721 -38.94845 -36.77057 -35.90980 -35.74131 -33.73192 -33.28051 -32.74107 -30.44067 -29.43701 -28.10858 -27.57864 -26.41953 -25.14667 -23.57899 -22.23259 -21.94938 -21.24046 -21.00157 -19.88351 -18.39582 -18.11821 -17.87559 -17.54575 -17.13187 -16.98809 -16.68542 -16.54833 -16.41980 -15.92535 -15.77481 -15.55196 -15.43214 -15.11444 -14.94537 -14.68287 -14.48239 -14.03253 -13.93995 -13.72701 -13.49812 -13.39096 -13.24831 -13.04808 -13.02536 -12.87435 -12.86499 -12.40706 -12.35940 -12.33835 -12.23943 -12.11329 -11.64293 -11.60629 -11.44741 -10.94684 -10.77237 -10.63136 -10.24975 -10.16018 -10.00311 -9.34024 -8.46843 -5.95457 1.36446 1.42094 1.55906 1.56294 1.77191 2.04408 2.27354 2.57362 2.67574 3.03141 3.20167 3.33625 3.70846 3.78384 3.90118 3.98775 4.03469 4.09076 4.11766 4.16500 4.23071 4.29889 4.31224 4.34231 4.41140 4.47445 4.50401 4.57247 4.62118 4.64877 4.76617 4.83689 4.87992 4.92650 4.93416 4.95785 5.01580 5.30470 5.33152 5.34608 5.41148 5.76559 5.95357 6.04985 6.13582 6.17443 6.53554 6.59891 7.12789 7.20346 7.56074 8.11201 8.70750 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.040099 B = 0.001499 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.106899 B =18672.670867 C =18882.672339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.175 4.175 4 O -0.394 6.394 5 C 0.046 3.954 6 C 0.509 3.491 7 O -0.576 6.576 8 N -0.710 5.710 9 C 0.138 3.862 10 C 0.092 3.908 11 H 0.083 0.917 12 C 0.025 3.975 13 N -0.527 5.527 14 C 0.057 3.943 15 C 0.442 3.558 16 O -0.613 6.613 17 N -0.574 5.574 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.016 3.984 27 C 0.078 3.922 28 O -0.385 6.385 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.418 0.582 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.114 0.886 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.073 0.927 48 H 0.036 0.964 49 H 0.060 0.940 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.287 14.489 17.010 29.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 C -0.232 4.232 4 O -0.314 6.314 5 C -0.033 4.033 6 C 0.296 3.704 7 O -0.455 6.455 8 N -0.364 5.364 9 C 0.013 3.987 10 C 0.034 3.966 11 H 0.101 0.899 12 C -0.104 4.104 13 N -0.253 5.253 14 C -0.074 4.074 15 C 0.229 3.771 16 O -0.498 6.498 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.112 4.112 27 C 0.001 3.999 28 O -0.304 6.304 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.255 0.745 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.123 0.877 43 H 0.082 0.918 44 H 0.132 0.868 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.055 0.945 49 H 0.078 0.922 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.300 14.841 16.959 29.671 hybrid contribution 0.873 -1.241 -0.821 1.725 sum -18.428 13.600 16.138 28.017 Atomic orbital electron populations 1.21897 0.93257 1.02620 1.03037 1.22404 0.95523 0.92959 0.87592 1.22311 1.01811 0.96135 1.02949 1.88034 1.35645 1.70356 1.37352 1.22351 0.88357 0.98299 0.94338 1.20880 0.80695 0.78464 0.90329 1.90718 1.53324 1.61780 1.39670 1.45648 1.22035 1.53126 1.15562 1.21223 0.94156 0.96147 0.87150 1.22291 0.96327 0.89394 0.88626 0.89930 1.22790 0.89867 0.99253 0.98457 1.61748 1.27985 1.26686 1.08836 1.21760 0.92433 1.00480 0.92730 1.20674 0.89325 0.82451 0.84607 1.90471 1.69069 1.62485 1.27822 1.41947 1.14951 1.50074 1.14189 1.19702 0.92084 1.34062 1.00238 0.90159 1.26027 1.03658 0.97167 0.94377 1.69681 1.39850 1.42723 1.03973 0.84877 0.77157 0.78034 0.78313 1.19661 1.19726 1.19730 1.22838 1.00931 0.93202 0.94217 1.22617 0.86318 0.95977 0.94980 1.87955 1.34193 1.46962 1.61295 0.93033 0.92524 0.88894 0.89810 0.89664 0.92000 0.93141 0.87530 0.87482 0.74471 0.91686 0.89106 0.93347 0.87704 0.91758 0.86809 0.77105 0.91357 0.90868 0.94549 0.92212 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.56 71.98 0.69 -0.96 16 2 C 0.07 0.83 3.34 30.59 0.10 0.93 16 3 C -0.17 -1.65 9.53 71.98 0.69 -0.96 16 4 O -0.39 -7.53 9.52 -129.94 -1.24 -8.76 16 5 C 0.05 0.60 6.23 71.24 0.44 1.04 16 6 C 0.51 10.42 7.91 87.66 0.69 11.11 16 7 O -0.58 -17.93 16.50 16.02 0.26 -17.67 16 8 N -0.71 -11.26 5.50 -463.06 -2.55 -13.81 16 9 C 0.14 2.52 5.35 86.38 0.46 2.98 16 10 C 0.09 1.80 2.84 30.63 0.09 1.88 16 11 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 12 C 0.02 0.56 4.93 86.31 0.43 0.98 16 13 N -0.53 -16.18 4.42 -899.77 -3.98 -20.16 16 14 C 0.06 1.92 5.45 85.56 0.47 2.39 16 15 C 0.44 20.50 7.35 87.66 0.64 21.15 16 16 O -0.61 -32.68 14.25 -3.08 -0.04 -32.72 16 17 N -0.57 -28.99 5.29 -306.98 -1.62 -30.62 16 18 C -0.33 -18.54 9.68 84.04 0.81 -17.72 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 21 N -0.92 -49.36 13.05 21.66 0.28 -49.08 16 22 Si 0.99 42.46 29.55 68.60 2.03 44.48 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 C 0.02 0.50 5.30 86.31 0.46 0.95 16 27 C 0.08 1.83 7.01 72.01 0.50 2.34 16 28 O -0.38 -8.43 10.42 -148.98 -1.55 -9.99 16 29 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.57 7.79 -2.39 -0.02 0.55 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.52 7.87 -2.38 -0.02 0.50 16 35 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.11 0.79 7.87 -2.39 -0.02 0.77 16 37 H 0.11 0.82 8.08 -2.39 -0.02 0.80 16 38 H 0.42 4.38 8.47 -92.71 -0.79 3.59 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.10 2.02 8.09 -2.39 -0.02 2.00 16 43 H 0.06 1.98 8.12 -2.39 -0.02 1.97 16 44 H 0.11 3.33 8.04 -2.39 -0.02 3.31 16 45 H 0.40 19.07 7.90 -92.71 -0.73 18.33 16 46 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 47 H 0.07 2.78 6.10 -2.39 -0.01 2.77 16 48 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 50 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -76.60 411.29 -2.04 -78.64 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.57 Total: 33.77 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 6.94 Total: 25.91 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -7.87 Total: -113.66 kcal Atomic # 8 Polarization: -66.57 SS G_CDS: -2.57 Total: -69.14 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -76.60 -2.04 -78.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714461996.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.343 kcal (2) G-P(sol) polarization free energy of solvation -76.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds