Wall clock time and date at job start Wed Apr 1 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00287 * 2 1 4 4 C 1.53001 * 109.47406 * 66.04362 * 3 2 1 5 5 N 1.46501 * 109.47402 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99556 * 270.00188 * 5 4 3 7 7 C 1.34770 * 120.00013 * 89.99938 * 5 4 3 8 8 O 1.21281 * 119.99965 * 0.02562 * 7 5 4 9 9 C 1.50697 * 120.00148 * 180.02562 * 7 5 4 10 10 C 1.52995 * 109.47391 * 180.02562 * 9 7 5 11 11 O 1.42967 * 109.47161 * 175.00116 * 10 9 7 12 12 C 1.43095 * 113.77014 * 178.79211 * 11 10 9 13 13 C 1.53261 * 108.94358 * 302.02838 * 12 11 10 14 14 C 1.53259 * 108.84186 * 54.52606 * 13 12 11 15 15 O 1.42968 * 109.47265 * 294.99606 * 10 9 7 16 16 C 1.46898 * 110.99945 * 236.04236 * 2 1 3 17 17 C 1.50700 * 109.47159 * 293.96099 * 16 2 1 18 18 O 1.21294 * 119.99976 * 359.97438 * 17 16 2 19 19 N 1.34775 * 120.00039 * 180.02562 * 17 16 2 20 20 C 1.37093 * 120.00027 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00236 * 359.97438 * 20 19 17 22 22 C 1.38958 * 119.99739 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00446 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99696 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47164 * 90.00081 * 24 22 20 26 26 H 1.48506 * 109.46916 * 210.00187 * 24 22 20 27 27 H 1.48505 * 109.47364 * 329.99944 * 24 22 20 28 28 H 1.09005 * 109.46661 * 59.99969 * 1 2 3 29 29 H 1.08989 * 109.47517 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46958 * 300.00663 * 1 2 3 31 31 H 1.09006 * 109.47053 * 306.04809 * 3 2 1 32 32 H 1.08994 * 109.47237 * 186.04540 * 3 2 1 33 33 H 1.08997 * 109.46688 * 59.99622 * 4 3 2 34 34 H 1.09000 * 109.46743 * 300.00564 * 4 3 2 35 35 H 1.08997 * 109.46795 * 269.99778 * 6 5 4 36 36 H 1.08997 * 109.47075 * 29.99661 * 6 5 4 37 37 H 1.08999 * 109.46492 * 149.99669 * 6 5 4 38 38 H 1.09006 * 109.47218 * 59.99878 * 9 7 5 39 39 H 1.09008 * 109.47128 * 300.00317 * 9 7 5 40 40 H 1.08998 * 109.47129 * 54.99933 * 10 9 7 41 41 H 1.08997 * 109.55621 * 61.86774 * 12 11 10 42 42 H 1.08999 * 109.55712 * 182.08124 * 12 11 10 43 43 H 1.08997 * 109.57207 * 174.33189 * 13 12 11 44 44 H 1.08998 * 109.57441 * 294.58821 * 13 12 11 45 45 H 1.08994 * 109.56239 * 65.31171 * 14 13 12 46 46 H 1.08999 * 109.55602 * 185.64189 * 14 13 12 47 47 H 1.09006 * 109.47279 * 53.95375 * 16 2 1 48 48 H 1.08993 * 109.47388 * 173.95780 * 16 2 1 49 49 H 0.97006 * 120.00361 * 359.97438 * 19 17 16 50 50 H 0.96997 * 120.00536 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0575 1.3182 5 7 2.1561 3.4254 1.3180 6 6 3.5011 3.6941 1.8328 7 6 1.4014 4.4364 0.8441 8 8 0.2878 4.2139 0.4183 9 6 1.9412 5.8434 0.8433 10 6 0.8926 6.7916 0.2584 11 8 1.3571 8.1396 0.3643 12 6 0.4543 9.1055 -0.1829 13 6 0.2051 8.7737 -1.6583 14 6 -0.2756 7.3224 -1.7650 15 8 0.6736 6.4699 -1.1173 16 6 1.9955 -0.7660 -1.1375 17 6 1.6368 -2.2204 -0.9728 18 8 1.0052 -2.5832 -0.0029 19 7 2.0187 -3.1182 -1.9026 20 6 1.6929 -4.4414 -1.7525 21 1 1.1305 -4.7644 -0.8889 22 6 2.0862 -5.3669 -2.7115 23 7 2.7709 -4.9739 -3.7620 24 14 1.6416 -7.1697 -2.5073 25 1 0.3294 -7.4319 -3.1511 26 1 2.6840 -8.0121 -3.1469 27 1 1.5581 -7.4983 -1.0614 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.5612 1.9273 -0.8309 32 1 3.0798 1.3443 -0.1082 33 1 2.0658 1.5015 2.1491 34 1 0.5473 2.0845 1.4264 35 1 3.4452 3.9103 2.8997 36 1 4.1330 2.8208 1.6717 37 1 3.9256 4.5512 1.3101 38 1 2.8469 5.8848 0.2381 39 1 2.1730 6.1442 1.8651 40 1 -0.0416 6.6848 0.8097 41 1 -0.4888 9.0735 0.3626 42 1 0.8904 10.1009 -0.0997 43 1 -0.5575 9.4415 -2.0590 44 1 1.1303 8.8963 -2.2214 45 1 -1.2464 7.2229 -1.2795 46 1 -0.3606 7.0425 -2.8150 47 1 1.5611 -0.3874 -2.0628 48 1 3.0797 -0.6613 -1.1756 49 1 2.5242 -2.8282 -2.6781 50 1 3.0458 -5.6200 -4.4312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715515335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:02 Heat of formation + Delta-G solvation = -148.358891 kcal Electronic energy + Delta-G solvation = -30344.147305 eV Core-core repulsion = 25986.181238 eV Total energy + Delta-G solvation = -4357.966067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63921 -39.71443 -38.52911 -36.71878 -36.00651 -35.39866 -33.82230 -33.61072 -31.25459 -31.08275 -29.42987 -27.62400 -26.90383 -26.36566 -25.43128 -24.41751 -23.21562 -21.58137 -21.06015 -19.39310 -19.05517 -18.00810 -17.79363 -17.22812 -16.90068 -16.52864 -16.09631 -16.04185 -15.44741 -15.31841 -15.12304 -15.04698 -14.56787 -14.46468 -13.95183 -13.68379 -13.65002 -13.59104 -13.28676 -13.26473 -13.13151 -12.78251 -12.50733 -12.45288 -12.03402 -11.94577 -11.91659 -11.50374 -11.48479 -11.44990 -11.25431 -11.16460 -10.88551 -10.70962 -10.40210 -10.36199 -10.18394 -10.04649 -9.96961 -9.43839 -8.92244 -8.36848 -7.93544 -7.79846 -6.37941 -3.78544 2.42743 2.56314 3.20442 3.27050 3.28790 3.30114 3.34974 3.95474 4.11370 4.27477 4.28707 4.30856 4.34544 4.47767 4.61187 4.70683 4.85119 4.89696 4.97132 5.00184 5.04790 5.09018 5.17753 5.23719 5.28274 5.30287 5.33747 5.40563 5.43632 5.57143 5.60609 5.74701 5.81515 5.87253 5.96544 6.03381 6.12772 6.30911 6.35397 6.43685 6.65483 6.80328 7.14252 7.32937 7.44752 7.58845 7.97770 8.10616 8.66312 9.22142 9.58968 10.11125 10.79918 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022522 B = 0.001768 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.944038 B =15833.688635 C =16410.159584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.516 5.516 3 C 0.041 3.959 4 C 0.120 3.880 5 N -0.616 5.616 6 C 0.074 3.926 7 C 0.519 3.481 8 O -0.525 6.525 9 C -0.126 4.126 10 C 0.264 3.736 11 O -0.396 6.396 12 C 0.059 3.941 13 C -0.194 4.194 14 C 0.058 3.942 15 O -0.377 6.377 16 C 0.047 3.953 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.015 0.985 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.100 0.900 47 H 0.047 0.953 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 29.587 7.058 30.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.241 5.241 3 C -0.088 4.088 4 C -0.003 4.003 5 N -0.350 5.350 6 C -0.069 4.069 7 C 0.306 3.694 8 O -0.400 6.400 9 C -0.166 4.166 10 C 0.168 3.832 11 O -0.317 6.317 12 C -0.017 4.017 13 C -0.232 4.232 14 C -0.018 4.018 15 O -0.297 6.297 16 C -0.084 4.084 17 C 0.231 3.769 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.034 0.966 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.118 0.882 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.107 28.753 7.759 29.782 hybrid contribution -0.290 -0.078 -1.350 1.383 sum -0.397 28.676 6.409 29.386 Atomic orbital electron populations 1.22570 0.86596 1.04226 0.99244 1.61534 1.08894 1.10864 1.42769 1.22431 1.00089 0.89219 0.97070 1.21479 1.00897 0.79755 0.98166 1.47819 1.16662 1.07758 1.62779 1.21885 0.83027 1.02835 0.99159 1.20183 0.85467 0.86337 0.77438 1.90747 1.19648 1.84484 1.45146 1.21496 0.99898 0.91400 1.03837 1.22866 0.95815 0.80953 0.83567 1.88044 1.47125 1.16235 1.80341 1.22641 0.93808 0.92688 0.92556 1.22815 1.03641 0.98490 0.98243 1.22624 0.91550 0.88679 0.98994 1.88187 1.62124 1.55152 1.24269 1.21853 1.00552 0.94100 0.91940 1.19732 0.85348 0.86615 0.85209 1.90480 1.43855 1.80151 1.31612 1.41868 1.49509 1.07347 1.21499 1.19700 1.32851 0.82291 1.07884 0.87910 1.25259 0.96876 1.00546 0.95339 1.69611 1.38135 1.35731 1.10936 0.85860 0.77979 0.81795 0.78652 1.20473 1.20968 1.19422 0.96598 0.88640 0.92071 0.94658 0.91016 0.89352 0.89532 0.92230 0.90378 0.90952 0.87143 0.86682 0.91789 0.92732 0.88185 0.89658 0.89949 0.92696 0.88226 0.93481 0.89497 0.77506 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.96 60.07 0.54 0.92 16 2 N -0.52 -9.10 4.50 -244.37 -1.10 -10.20 16 3 C 0.04 0.59 5.28 -3.83 -0.02 0.57 16 4 C 0.12 1.48 5.33 -4.04 -0.02 1.46 16 5 N -0.62 -6.31 2.87 -181.57 -0.52 -6.83 16 6 C 0.07 0.46 10.24 59.85 0.61 1.08 16 7 C 0.52 6.07 7.55 -10.99 -0.08 5.99 16 8 O -0.52 -8.25 15.00 -8.85 -0.13 -8.38 16 9 C -0.13 -1.09 4.33 -27.89 -0.12 -1.21 16 10 C 0.26 2.68 2.80 37.16 0.10 2.78 16 11 O -0.40 -3.68 10.54 -59.03 -0.62 -4.31 16 12 C 0.06 0.39 6.96 37.29 0.26 0.65 16 13 C -0.19 -1.22 6.35 -26.46 -0.17 -1.39 16 14 C 0.06 0.50 6.96 37.29 0.26 0.76 16 15 O -0.38 -4.51 9.77 -64.76 -0.63 -5.14 16 16 C 0.05 0.89 5.45 -4.98 -0.03 0.86 16 17 C 0.45 10.77 7.47 -10.99 -0.08 10.69 16 18 O -0.58 -15.76 13.91 5.55 0.08 -15.68 16 19 N -0.57 -14.61 5.29 -10.96 -0.06 -14.67 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 24 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 2.00 5.82 -51.94 -0.30 1.70 16 30 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 31 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 33 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.09 1.22 5.83 -51.93 -0.30 0.92 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 37 H 0.07 0.33 6.44 -51.93 -0.33 0.00 16 38 H 0.11 0.85 7.40 -51.93 -0.38 0.46 16 39 H 0.12 0.69 8.11 -51.92 -0.42 0.27 16 40 H 0.06 0.68 7.96 -51.93 -0.41 0.26 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 48 H 0.09 1.47 7.93 -51.93 -0.41 1.05 16 49 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 403.46 15.07 6.08 6.08 Total: -1.00 -35.30 403.46 -8.41 -43.71 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.21 Total: 8.22 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 1.01 Total: 15.08 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.96 Total: -55.85 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.31 Total: -33.51 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.30 -8.41 -43.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715515335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.647 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds