Wall clock time and date at job start Wed Apr 1 2020 02:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47095 * 2 1 4 4 C 1.42905 * 113.99944 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46998 * 29.99877 * 4 3 2 6 6 C 1.52993 * 109.47255 * 269.99988 * 4 3 2 7 7 C 1.50700 * 109.47138 * 149.99712 * 4 3 2 8 8 O 1.21283 * 119.99803 * 5.00047 * 7 4 3 9 9 N 1.34777 * 119.99675 * 185.27922 * 7 4 3 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 4 11 11 C 1.52999 * 109.46992 * 179.97438 * 10 9 7 12 12 O 1.42894 * 110.27660 * 62.91166 * 11 10 9 13 13 C 1.54597 * 110.30971 * 300.71539 * 11 10 9 14 14 C 1.54936 * 102.92250 * 219.12561 * 13 11 10 15 15 N 1.48527 * 103.22705 * 37.41404 * 14 13 11 16 16 C 1.46898 * 111.00233 * 200.27492 * 15 14 13 17 17 C 1.50701 * 109.47560 * 307.40310 * 16 15 14 18 18 O 1.21294 * 119.99305 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00319 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99914 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99979 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00105 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99806 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00313 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46811 * 90.00079 * 24 22 20 26 26 H 1.48500 * 109.47313 * 209.99761 * 24 22 20 27 27 H 1.48492 * 109.47096 * 329.99961 * 24 22 20 28 28 C 1.47896 * 105.82096 * 320.79472 * 15 14 13 29 29 H 1.09004 * 109.46983 * 59.99838 * 1 2 3 30 30 H 1.09001 * 109.47719 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47191 * 300.00633 * 1 2 3 32 32 H 1.09000 * 109.47191 * 239.99367 * 2 1 3 33 33 H 1.09001 * 109.46683 * 119.99459 * 2 1 3 34 34 H 1.08997 * 109.47336 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.47428 * 299.99829 * 6 4 3 36 36 H 1.09005 * 109.47357 * 59.99582 * 6 4 3 37 37 H 0.97000 * 119.99894 * 359.71837 * 9 7 4 38 38 H 1.08995 * 109.47421 * 299.99467 * 10 9 7 39 39 H 1.09001 * 109.47621 * 60.00103 * 10 9 7 40 40 H 0.96701 * 113.99701 * 300.70189 * 12 11 10 41 41 H 1.09006 * 110.72272 * 337.48462 * 13 11 10 42 42 H 1.09002 * 110.72407 * 100.76451 * 13 11 10 43 43 H 1.08996 * 110.67052 * 278.97787 * 14 13 11 44 44 H 1.09006 * 110.80874 * 155.91850 * 14 13 11 45 45 H 1.09009 * 109.47035 * 67.39811 * 16 15 14 46 46 H 1.09002 * 109.47916 * 187.39237 * 16 15 14 47 47 H 0.96995 * 120.00089 * 359.97438 * 19 17 16 48 48 H 0.97005 * 119.99773 * 179.97438 * 23 22 20 49 49 H 1.09007 * 109.91640 * 265.97275 * 28 15 14 50 50 H 1.09001 * 109.91711 * 144.68782 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9387 1.5006 1.4432 7 6 3.8348 2.7262 -0.7099 8 8 2.9865 3.5045 -1.0914 9 7 5.1385 2.9909 -0.9263 10 6 5.5309 4.2188 -1.6223 11 6 7.0556 4.2757 -1.7359 12 8 7.5343 3.1854 -2.5258 13 6 7.6998 4.2466 -0.3309 14 6 8.8754 5.2464 -0.4680 15 7 8.3152 6.3127 -1.3370 16 6 9.3866 7.0933 -1.9699 17 6 10.3415 7.5851 -0.9128 18 8 10.1481 7.3125 0.2532 19 7 11.4103 8.3278 -1.2630 20 6 12.2786 8.7756 -0.3012 21 1 12.1059 8.5336 0.7371 22 6 13.3801 9.5417 -0.6621 23 7 13.5899 9.8366 -1.9254 24 14 14.5629 10.1526 0.6484 25 1 15.6390 9.1493 0.8503 26 1 15.1618 11.4400 0.2135 27 1 13.8283 10.3539 1.9231 28 6 7.4960 5.6162 -2.3525 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.0253 1.5862 1.4437 35 1 3.5061 2.3592 1.9568 36 1 3.6465 0.5848 1.9571 37 1 5.8170 2.3684 -0.6212 38 1 5.0914 4.2274 -2.6197 39 1 5.1762 5.0836 -1.0615 40 1 7.3052 2.3143 -2.1738 41 1 6.9915 4.5854 0.4253 42 1 8.0681 3.2480 -0.0960 43 1 9.7314 4.7705 -0.9463 44 1 9.1556 5.6506 0.5049 45 1 9.9236 6.4643 -2.6801 46 1 8.9544 7.9457 -2.4941 47 1 11.5651 8.5454 -2.1954 48 1 14.3588 10.3718 -2.1774 49 1 8.0900 5.4356 -3.2485 50 1 6.6206 6.2170 -2.5992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716914903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:55 Heat of formation + Delta-G solvation = -186.864033 kcal Electronic energy + Delta-G solvation = -30307.766617 eV Core-core repulsion = 25948.130841 eV Total energy + Delta-G solvation = -4359.635775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49673 -40.75192 -39.76037 -38.69026 -37.11296 -35.86827 -35.44888 -33.48433 -33.33094 -32.33267 -31.13810 -30.23743 -28.63301 -26.87957 -25.71140 -24.75712 -23.57132 -22.80332 -21.52849 -21.27939 -21.08447 -19.89069 -18.91706 -18.13742 -17.86059 -17.47595 -17.01743 -16.79171 -16.60412 -16.46406 -16.27459 -16.01268 -15.89606 -15.66228 -15.16207 -14.84449 -14.70011 -14.40131 -14.23712 -14.15326 -13.73753 -13.66671 -13.45595 -13.38739 -13.21351 -13.15012 -13.00003 -12.87885 -12.71418 -12.43722 -12.35496 -12.31570 -12.28809 -12.11499 -12.04410 -11.86756 -11.49415 -11.06167 -10.98003 -10.48893 -10.24659 -10.17352 -10.01372 -9.39799 -8.47169 -5.96032 1.37596 1.41807 1.51424 1.54561 1.75663 2.02336 2.27646 2.69412 2.89600 3.18368 3.21274 3.28132 3.42370 3.59152 3.63075 3.77633 3.91741 4.01556 4.20462 4.22301 4.28068 4.32256 4.33314 4.43947 4.49924 4.50485 4.60276 4.61488 4.65916 4.72288 4.79167 4.80124 4.89561 4.96720 5.02417 5.07322 5.20922 5.22630 5.26098 5.27907 5.40832 5.80651 5.89549 6.06469 6.10747 6.45700 6.59202 6.73048 7.11758 7.15307 7.53983 8.09320 8.70221 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.031814 B = 0.001718 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.909506 B =16289.446499 C =16681.345318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.073 3.927 5 H 0.121 0.879 6 C -0.168 4.168 7 C 0.510 3.490 8 O -0.573 6.573 9 N -0.709 5.709 10 C 0.113 3.887 11 C 0.130 3.870 12 O -0.557 6.557 13 C -0.139 4.139 14 C 0.039 3.961 15 N -0.508 5.508 16 C 0.047 3.953 17 C 0.440 3.560 18 O -0.612 6.612 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.081 0.919 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.273 1.273 28 C 0.043 3.957 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.415 0.585 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.391 0.609 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.027 0.973 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.063 0.937 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.345 -23.562 0.264 29.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.314 6.314 4 C 0.012 3.988 5 H 0.139 0.861 6 C -0.225 4.225 7 C 0.297 3.703 8 O -0.451 6.451 9 N -0.364 5.364 10 C -0.012 4.012 11 C 0.088 3.912 12 O -0.365 6.365 13 C -0.177 4.177 14 C -0.088 4.088 15 N -0.233 5.233 16 C -0.085 4.085 17 C 0.227 3.773 18 O -0.498 6.498 19 N -0.209 5.209 20 C -0.463 4.463 21 H 0.099 0.901 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.085 4.085 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.253 0.747 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.241 0.759 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.045 0.955 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.128 0.872 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.134 -22.055 0.589 29.204 hybrid contribution 1.527 -0.408 -0.105 1.584 sum -17.607 -22.463 0.483 28.545 Atomic orbital electron populations 1.21779 0.93497 1.03404 1.02319 1.22821 0.96103 0.82218 1.01637 1.88041 1.19588 1.28646 1.95171 1.22026 0.83465 0.95541 0.97774 0.86108 1.22255 1.02874 1.03902 0.93494 1.21064 0.82308 0.88218 0.78705 1.90725 1.51676 1.50666 1.52017 1.45665 1.07101 1.24097 1.59586 1.21873 0.93739 0.87747 0.97824 1.21967 0.90671 0.87822 0.90722 1.86627 1.79892 1.17118 1.52890 1.23253 0.97329 1.00627 0.96539 1.23268 0.95711 0.90722 0.99124 1.64686 1.19564 1.21875 1.17157 1.22008 0.92102 0.99883 0.94495 1.20623 0.83495 0.82855 0.90298 1.90428 1.76170 1.61839 1.21408 1.41914 1.22377 1.46480 1.10083 1.19681 1.04741 1.31110 0.90759 0.90098 1.26048 0.99248 0.96743 0.99186 1.69681 1.30510 1.38892 1.17032 0.84914 0.77756 0.77914 0.77667 1.19571 1.19645 1.19753 1.22917 0.99101 0.92141 0.94333 0.93161 0.88655 0.92543 0.91963 0.91103 0.88670 0.93180 0.89325 0.74682 0.90931 0.91187 0.75853 0.89642 0.87567 0.95461 0.89971 0.91523 0.87241 0.77073 0.91306 0.91850 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.05 0.52 6.47 71.98 0.47 0.98 16 3 O -0.40 -7.46 9.53 -129.99 -1.24 -8.69 16 4 C 0.07 0.94 3.13 29.85 0.09 1.03 16 5 H 0.12 0.67 7.79 -2.38 -0.02 0.65 16 6 C -0.17 -1.50 9.48 71.98 0.68 -0.82 16 7 C 0.51 10.07 7.18 87.66 0.63 10.70 16 8 O -0.57 -17.94 16.51 15.95 0.26 -17.67 16 9 N -0.71 -9.62 5.08 -463.07 -2.35 -11.97 16 10 C 0.11 2.08 4.50 86.38 0.39 2.47 16 11 C 0.13 2.47 1.05 -9.92 -0.01 2.46 16 12 O -0.56 -9.38 12.95 -148.98 -1.93 -11.31 16 13 C -0.14 -2.84 5.64 31.80 0.18 -2.66 16 14 C 0.04 1.26 5.31 86.65 0.46 1.72 16 15 N -0.51 -16.51 5.26 -887.58 -4.67 -21.18 16 16 C 0.05 1.66 5.52 85.56 0.47 2.13 16 17 C 0.44 20.93 7.49 87.66 0.66 21.58 16 18 O -0.61 -32.93 13.09 -3.07 -0.04 -32.97 16 19 N -0.57 -29.42 5.29 -306.98 -1.62 -31.05 16 20 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 23 N -0.92 -49.72 13.05 21.66 0.28 -49.43 16 24 Si 0.99 42.78 29.55 68.60 2.03 44.80 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 C 0.04 1.06 6.18 86.45 0.53 1.60 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.49 8.09 -2.39 -0.02 0.47 16 33 H 0.07 0.46 7.87 -2.39 -0.02 0.44 16 34 H 0.09 0.41 7.94 -2.39 -0.02 0.40 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.50 7.87 -2.38 -0.02 0.48 16 37 H 0.42 2.45 7.13 -92.71 -0.66 1.79 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.39 2.96 8.13 -74.06 -0.60 2.35 16 41 H 0.08 1.77 7.86 -2.38 -0.02 1.75 16 42 H 0.11 1.48 8.08 -2.39 -0.02 1.46 16 43 H 0.03 0.92 8.02 -2.39 -0.02 0.90 16 44 H 0.08 3.30 5.96 -2.38 -0.01 3.29 16 45 H 0.07 2.18 7.81 -2.38 -0.02 2.16 16 46 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 47 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 48 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 49 H 0.06 1.57 7.39 -2.38 -0.02 1.55 16 50 H 0.10 2.29 7.68 -2.39 -0.02 2.27 16 Total: -1.00 -79.92 407.00 -3.73 -83.65 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -1.02 Total: 33.78 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 6.57 Total: 22.04 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -8.36 Total: -113.64 kcal Atomic # 8 Polarization: -67.70 SS G_CDS: -2.94 Total: -70.64 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -79.92 -3.73 -83.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716914903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.215 kcal (2) G-P(sol) polarization free energy of solvation -79.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds