Wall clock time and date at job start Wed Apr 1 2020 02:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46807 * 29.99983 * 4 3 2 6 6 C 1.53002 * 109.47072 * 269.99829 * 4 3 2 7 7 C 1.50700 * 109.47036 * 149.99828 * 4 3 2 8 8 O 1.21284 * 120.00340 * 4.99714 * 7 4 3 9 9 N 1.34783 * 119.99696 * 185.00262 * 7 4 3 10 10 C 1.46499 * 119.99738 * 179.97438 * 9 7 4 11 11 C 1.52998 * 109.46744 * 179.97438 * 10 9 7 12 12 O 1.42896 * 110.63090 * 303.10617 * 11 10 9 13 13 C 1.55140 * 110.70375 * 66.40504 * 11 10 9 14 14 C 1.54909 * 101.65509 * 154.03322 * 13 11 10 15 15 N 1.47850 * 104.79217 * 322.92919 * 14 13 11 16 16 C 1.46897 * 110.99596 * 146.36532 * 15 14 13 17 17 C 1.50698 * 109.47428 * 69.15569 * 16 15 14 18 18 O 1.21285 * 120.00074 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99872 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99889 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99892 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99902 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99967 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99713 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47109 * 89.99769 * 24 22 20 26 26 H 1.48503 * 109.46897 * 209.99748 * 24 22 20 27 27 H 1.48501 * 109.46753 * 329.99361 * 24 22 20 28 28 C 1.47436 * 108.56692 * 24.09444 * 15 14 13 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 34 34 H 1.09000 * 109.46986 * 179.97438 * 6 4 3 35 35 H 1.08997 * 109.46833 * 300.00204 * 6 4 3 36 36 H 1.09001 * 109.46890 * 59.99978 * 6 4 3 37 37 H 0.96996 * 119.99850 * 359.97438 * 9 7 4 38 38 H 1.08994 * 109.47275 * 299.99798 * 10 9 7 39 39 H 1.09003 * 109.46911 * 59.99688 * 10 9 7 40 40 H 0.96691 * 114.00172 * 59.30254 * 12 11 10 41 41 H 1.09001 * 110.99191 * 272.12076 * 13 11 10 42 42 H 1.09001 * 110.99191 * 35.94059 * 13 11 10 43 43 H 1.09002 * 110.37538 * 204.09932 * 14 13 11 44 44 H 1.08992 * 110.46698 * 81.80139 * 14 13 11 45 45 H 1.09008 * 109.46841 * 189.15803 * 16 15 14 46 46 H 1.09001 * 109.47186 * 309.14838 * 16 15 14 47 47 H 0.97003 * 120.00356 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99681 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.88836 * 239.59794 * 28 15 14 50 50 H 1.09008 * 109.88995 * 118.41950 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9399 1.5002 1.4417 7 6 3.8342 2.7264 -0.7110 8 8 2.9856 3.5049 -1.0916 9 7 5.1380 2.9939 -0.9235 10 6 5.5301 4.2247 -1.6147 11 6 7.0549 4.2843 -1.7244 12 8 7.6565 4.1989 -0.4311 13 6 7.5822 3.1599 -2.6542 14 6 8.9132 3.7704 -3.1598 15 7 8.6279 5.2114 -3.3275 16 6 9.8140 6.0219 -3.0208 17 6 10.8592 5.8055 -4.0846 18 8 10.6377 5.0507 -5.0077 19 7 12.0398 6.4516 -4.0107 20 6 12.9909 6.2542 -4.9782 21 1 12.7940 5.5814 -5.7998 22 6 14.2082 6.9199 -4.9017 23 7 14.4476 7.7389 -3.9023 24 14 15.5038 6.6515 -6.2204 25 1 15.3132 7.6419 -7.3104 26 1 16.8552 6.8210 -5.6283 27 1 15.3731 5.2784 -6.7705 28 6 7.4999 5.5719 -2.4493 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0265 1.5858 1.4413 35 1 3.5076 2.3586 1.9558 36 1 3.6482 0.5842 1.9555 37 1 5.8167 2.3715 -0.6189 38 1 5.0929 4.2358 -2.6130 39 1 5.1726 5.0870 -1.0518 40 1 7.4385 3.3899 0.0515 41 1 7.7616 2.2421 -2.0942 42 1 6.8948 2.9828 -3.4814 43 1 9.1963 3.3260 -4.1140 44 1 9.7037 3.6232 -2.4241 45 1 9.5365 7.0758 -2.9930 46 1 10.2153 5.7263 -2.0515 47 1 12.2168 7.0556 -3.2726 48 1 15.2972 8.2038 -3.8492 49 1 6.6766 5.9652 -3.0457 50 1 7.8207 6.3160 -1.7201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716914905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:03 Heat of formation + Delta-G solvation = -158.300150 kcal Electronic energy + Delta-G solvation = -30201.023704 eV Core-core repulsion = 25842.626552 eV Total energy + Delta-G solvation = -4358.397152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65220 -39.69989 -38.26853 -37.85836 -35.93441 -34.63672 -33.84280 -32.96813 -31.52240 -31.08578 -30.53647 -29.40622 -27.30635 -25.66429 -24.42178 -23.84156 -23.10628 -21.54539 -20.80941 -20.45659 -19.20163 -18.30169 -17.85379 -17.55587 -16.81833 -16.36576 -16.12431 -15.83375 -15.54556 -15.40255 -15.12433 -14.66469 -14.46678 -14.25847 -14.09157 -13.84436 -13.67520 -13.43748 -13.32242 -13.04364 -12.89750 -12.74375 -12.70475 -12.47168 -12.41556 -12.02332 -11.85627 -11.61074 -11.56393 -11.48473 -11.44634 -11.18319 -11.05685 -10.81405 -10.40468 -10.38274 -10.20454 -10.17590 -9.86810 -9.50717 -9.46899 -8.44716 -7.95727 -7.89060 -6.39111 -3.79829 2.23038 2.36195 3.19326 3.27605 3.33192 3.37863 3.74921 3.93811 3.99993 4.12795 4.23688 4.31501 4.33135 4.40146 4.45066 4.60049 4.66952 4.73142 4.86960 4.91748 5.08896 5.14044 5.17965 5.25744 5.26617 5.31429 5.43190 5.43797 5.46083 5.55394 5.58607 5.63068 5.69118 5.82905 5.87531 5.92196 5.94759 6.09176 6.31632 6.39702 6.57175 7.00047 7.17891 7.21965 7.29027 7.57377 7.81468 8.08929 8.64958 9.20904 9.57747 10.09803 10.78756 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.036891 B = 0.001648 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.807072 B =16983.039780 C =17109.047530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.087 0.913 6 C -0.171 4.171 7 C 0.515 3.485 8 O -0.514 6.514 9 N -0.728 5.728 10 C 0.105 3.895 11 C 0.098 3.902 12 O -0.543 6.543 13 C -0.155 4.155 14 C 0.058 3.942 15 N -0.500 5.500 16 C 0.040 3.960 17 C 0.445 3.555 18 O -0.579 6.579 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.057 3.943 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.396 0.604 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.369 0.631 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.094 0.906 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.425 -14.751 13.375 29.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.010 3.990 5 H 0.104 0.896 6 C -0.228 4.228 7 C 0.300 3.700 8 O -0.387 6.387 9 N -0.383 5.383 10 C -0.019 4.019 11 C 0.056 3.944 12 O -0.348 6.348 13 C -0.193 4.193 14 C -0.069 4.069 15 N -0.224 5.224 16 C -0.091 4.091 17 C 0.231 3.769 18 O -0.462 6.462 19 N -0.203 5.203 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.071 4.071 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.230 0.770 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.216 0.784 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.040 -13.707 11.799 28.511 hybrid contribution 1.411 -0.897 1.055 1.977 sum -20.630 -14.604 12.854 28.356 Atomic orbital electron populations 1.21732 0.93283 1.02327 1.03515 1.22614 0.96111 0.83339 1.00151 1.88069 1.18119 1.26509 1.94924 1.21866 0.84099 0.96305 0.96753 0.89559 1.22241 1.01601 1.04028 0.94975 1.20381 0.82369 0.87763 0.79513 1.90752 1.49971 1.48608 1.49384 1.45839 1.07179 1.24343 1.60916 1.22004 0.94350 0.86935 0.98640 1.22814 0.89834 0.97982 0.83819 1.86679 1.74122 1.45098 1.28939 1.23449 0.99031 0.97245 0.99569 1.22972 0.94758 0.87551 1.01653 1.63367 1.04930 1.03909 1.50215 1.22129 0.91184 0.98606 0.97206 1.19731 0.83478 0.85294 0.88443 1.90498 1.79525 1.40138 1.36073 1.41860 1.12896 1.40540 1.24991 1.19693 0.93491 1.25144 1.04449 0.87960 1.25249 0.98473 0.96276 0.97957 1.69615 1.25367 1.28608 1.30796 0.85866 0.79342 0.78929 0.80186 1.20414 1.20980 1.19480 1.22857 0.95741 0.94551 0.93995 0.90923 0.91707 0.91578 0.93139 0.93126 0.90913 0.90894 0.91066 0.76978 0.89783 0.90275 0.78408 0.90798 0.89508 0.88662 0.93568 0.89376 0.92980 0.77512 0.91925 0.88772 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.05 0.33 6.47 37.16 0.24 0.57 16 3 O -0.36 -3.41 9.53 -55.09 -0.52 -3.93 16 4 C 0.07 0.50 3.13 -27.88 -0.09 0.42 16 5 H 0.09 0.39 7.79 -51.93 -0.40 -0.01 16 6 C -0.17 -0.83 9.48 37.16 0.35 -0.48 16 7 C 0.52 5.08 7.18 -10.98 -0.08 5.00 16 8 O -0.51 -7.61 16.51 -14.30 -0.24 -7.85 16 9 N -0.73 -5.28 5.16 -60.29 -0.31 -5.59 16 10 C 0.10 0.96 4.71 -4.04 -0.02 0.94 16 11 C 0.10 0.97 0.92 -88.80 -0.08 0.89 16 12 O -0.54 -5.31 13.09 -35.23 -0.46 -5.78 16 13 C -0.15 -1.60 5.94 -24.59 -0.15 -1.75 16 14 C 0.06 0.89 5.74 -2.29 -0.01 0.87 16 15 N -0.50 -8.23 4.86 -232.69 -1.13 -9.36 16 16 C 0.04 0.73 5.05 -4.98 -0.03 0.71 16 17 C 0.45 10.59 7.58 -10.98 -0.08 10.51 16 18 O -0.58 -15.61 14.61 5.55 0.08 -15.53 16 19 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 24 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.06 0.72 6.23 -2.84 -0.02 0.71 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.05 0.22 7.87 -51.93 -0.41 -0.19 16 34 H 0.07 0.20 7.92 -51.93 -0.41 -0.21 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.26 7.87 -51.93 -0.41 -0.14 16 37 H 0.40 1.65 7.05 -40.82 -0.29 1.36 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.37 2.08 7.78 45.56 0.35 2.43 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.90 8.02 -51.93 -0.42 0.48 16 43 H 0.10 1.70 7.38 -51.93 -0.38 1.32 16 44 H 0.05 0.74 7.62 -51.93 -0.40 0.34 16 45 H 0.09 1.47 8.03 -51.92 -0.42 1.05 16 46 H 0.05 0.90 7.85 -51.93 -0.41 0.49 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.09 1.09 7.82 -51.93 -0.41 0.68 16 50 H 0.07 0.90 7.47 -51.92 -0.39 0.51 16 LS Contribution 409.75 15.07 6.17 6.17 Total: -1.00 -36.27 409.75 -8.17 -44.45 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.59 Total: 9.87 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 0.18 Total: 9.93 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.78 Total: -53.45 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.14 Total: -33.08 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.27 -8.17 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716914905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.854 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds