Wall clock time and date at job start Wed Apr 1 2020 02:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46807 * 29.99983 * 4 3 2 6 6 C 1.53002 * 109.47072 * 269.99829 * 4 3 2 7 7 C 1.50700 * 109.47036 * 149.99828 * 4 3 2 8 8 O 1.21284 * 120.00340 * 4.99714 * 7 4 3 9 9 N 1.34783 * 119.99696 * 185.00262 * 7 4 3 10 10 C 1.46499 * 119.99738 * 179.97438 * 9 7 4 11 11 C 1.52998 * 109.46744 * 179.97438 * 10 9 7 12 12 O 1.42896 * 110.63090 * 303.10617 * 11 10 9 13 13 C 1.55140 * 110.70375 * 66.40504 * 11 10 9 14 14 C 1.54909 * 101.65509 * 154.03322 * 13 11 10 15 15 N 1.47850 * 104.79217 * 322.92919 * 14 13 11 16 16 C 1.46897 * 110.99596 * 146.36532 * 15 14 13 17 17 C 1.50698 * 109.47428 * 69.15569 * 16 15 14 18 18 O 1.21285 * 120.00074 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99872 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99889 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99892 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99902 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99967 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99713 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47109 * 89.99769 * 24 22 20 26 26 H 1.48503 * 109.46897 * 209.99748 * 24 22 20 27 27 H 1.48501 * 109.46753 * 329.99361 * 24 22 20 28 28 C 1.47436 * 108.56692 * 24.09444 * 15 14 13 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 34 34 H 1.09000 * 109.46986 * 179.97438 * 6 4 3 35 35 H 1.08997 * 109.46833 * 300.00204 * 6 4 3 36 36 H 1.09001 * 109.46890 * 59.99978 * 6 4 3 37 37 H 0.96996 * 119.99850 * 359.97438 * 9 7 4 38 38 H 1.08994 * 109.47275 * 299.99798 * 10 9 7 39 39 H 1.09003 * 109.46911 * 59.99688 * 10 9 7 40 40 H 0.96691 * 114.00172 * 59.30254 * 12 11 10 41 41 H 1.09001 * 110.99191 * 272.12076 * 13 11 10 42 42 H 1.09001 * 110.99191 * 35.94059 * 13 11 10 43 43 H 1.09002 * 110.37538 * 204.09932 * 14 13 11 44 44 H 1.08992 * 110.46698 * 81.80139 * 14 13 11 45 45 H 1.09008 * 109.46841 * 189.15803 * 16 15 14 46 46 H 1.09001 * 109.47186 * 309.14838 * 16 15 14 47 47 H 0.97003 * 120.00356 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99681 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.88836 * 239.59794 * 28 15 14 50 50 H 1.09008 * 109.88995 * 118.41950 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9399 1.5002 1.4417 7 6 3.8342 2.7264 -0.7110 8 8 2.9856 3.5049 -1.0916 9 7 5.1380 2.9939 -0.9235 10 6 5.5301 4.2247 -1.6147 11 6 7.0549 4.2843 -1.7244 12 8 7.6565 4.1989 -0.4311 13 6 7.5822 3.1599 -2.6542 14 6 8.9132 3.7704 -3.1598 15 7 8.6279 5.2114 -3.3275 16 6 9.8140 6.0219 -3.0208 17 6 10.8592 5.8055 -4.0846 18 8 10.6377 5.0507 -5.0077 19 7 12.0398 6.4516 -4.0107 20 6 12.9909 6.2542 -4.9782 21 1 12.7940 5.5814 -5.7998 22 6 14.2082 6.9199 -4.9017 23 7 14.4476 7.7389 -3.9023 24 14 15.5038 6.6515 -6.2204 25 1 15.3132 7.6419 -7.3104 26 1 16.8552 6.8210 -5.6283 27 1 15.3731 5.2784 -6.7705 28 6 7.4999 5.5719 -2.4493 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0265 1.5858 1.4413 35 1 3.5076 2.3586 1.9558 36 1 3.6482 0.5842 1.9555 37 1 5.8167 2.3715 -0.6189 38 1 5.0929 4.2358 -2.6130 39 1 5.1726 5.0870 -1.0518 40 1 7.4385 3.3899 0.0515 41 1 7.7616 2.2421 -2.0942 42 1 6.8948 2.9828 -3.4814 43 1 9.1963 3.3260 -4.1140 44 1 9.7037 3.6232 -2.4241 45 1 9.5365 7.0758 -2.9930 46 1 10.2153 5.7263 -2.0515 47 1 12.2168 7.0556 -3.2726 48 1 15.2972 8.2038 -3.8492 49 1 6.6766 5.9652 -3.0457 50 1 7.8207 6.3160 -1.7201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716914905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:02 Heat of formation + Delta-G solvation = -189.556854 kcal Electronic energy + Delta-G solvation = -30202.379096 eV Core-core repulsion = 25842.626552 eV Total energy + Delta-G solvation = -4359.752545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47716 -40.70975 -39.74110 -38.70596 -37.07097 -35.85844 -35.41078 -33.49855 -33.28782 -32.35463 -31.14585 -30.31779 -28.65151 -26.87173 -25.75056 -24.74452 -23.57104 -22.64574 -21.60615 -21.36282 -20.99373 -19.88692 -18.97903 -18.17776 -17.86814 -17.53005 -16.97023 -16.73907 -16.50965 -16.48072 -16.17339 -16.14694 -15.84851 -15.62027 -15.17314 -14.93920 -14.56594 -14.40061 -14.22926 -14.06685 -13.69993 -13.69695 -13.54148 -13.39736 -13.25511 -13.20638 -12.98043 -12.87675 -12.68640 -12.48426 -12.39987 -12.30077 -12.24184 -12.11226 -12.04596 -11.88616 -11.48869 -11.05101 -10.99591 -10.49606 -10.30760 -10.24131 -10.00143 -9.26495 -8.45652 -5.94500 1.38428 1.41815 1.51200 1.54617 1.74324 2.06269 2.28860 2.75323 2.89013 3.03473 3.20969 3.34826 3.43297 3.52240 3.63287 3.82049 3.91919 4.01883 4.20023 4.23708 4.26174 4.31269 4.32627 4.40619 4.49438 4.50482 4.57187 4.61127 4.66423 4.70862 4.79998 4.82662 4.89494 4.94124 5.01963 5.07646 5.11967 5.21151 5.24447 5.27362 5.41419 5.85393 5.99906 6.08976 6.10225 6.44330 6.61452 6.71095 7.13710 7.14735 7.57081 8.12920 8.71881 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.036891 B = 0.001648 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.807072 B =16983.039780 C =17109.047530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.071 3.929 5 H 0.118 0.882 6 C -0.166 4.166 7 C 0.511 3.489 8 O -0.572 6.572 9 N -0.709 5.709 10 C 0.114 3.886 11 C 0.118 3.882 12 O -0.554 6.554 13 C -0.140 4.140 14 C 0.054 3.946 15 N -0.522 5.522 16 C 0.054 3.946 17 C 0.442 3.558 18 O -0.615 6.615 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.051 3.949 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.415 0.585 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.389 0.611 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.106 0.894 46 H 0.066 0.934 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.103 0.897 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.350 -16.253 14.820 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.314 6.314 4 C 0.010 3.990 5 H 0.135 0.865 6 C -0.224 4.224 7 C 0.298 3.702 8 O -0.450 6.450 9 N -0.364 5.364 10 C -0.011 4.011 11 C 0.075 3.925 12 O -0.363 6.363 13 C -0.179 4.179 14 C -0.073 4.073 15 N -0.246 5.246 16 C -0.077 4.077 17 C 0.230 3.770 18 O -0.501 6.501 19 N -0.213 5.213 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.077 4.077 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.253 0.747 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.240 0.760 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.124 0.876 46 H 0.083 0.917 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.121 0.879 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.946 -15.238 13.293 29.842 hybrid contribution 1.360 -0.447 0.620 1.560 sum -20.586 -15.686 13.913 29.383 Atomic orbital electron populations 1.21775 0.93470 1.03393 1.02351 1.22812 0.96119 0.82247 1.01582 1.88035 1.19620 1.28573 1.95182 1.22047 0.83458 0.95506 0.98001 0.86480 1.22250 1.02985 1.03932 0.93198 1.21038 0.82295 0.88167 0.78692 1.90727 1.51634 1.50678 1.51972 1.45637 1.07073 1.23902 1.59833 1.21771 0.93436 0.87542 0.98326 1.22430 0.89958 0.96207 0.83868 1.86649 1.74226 1.46732 1.28651 1.23400 0.96057 0.98401 0.99994 1.22885 0.97259 0.87401 0.99759 1.63268 1.04947 1.04317 1.52109 1.21957 0.90392 1.00099 0.95259 1.20733 0.83721 0.83666 0.88927 1.90470 1.80248 1.41385 1.37947 1.41934 1.13363 1.41159 1.24838 1.19667 0.95166 1.26269 1.05158 0.90305 1.26037 0.99780 0.95502 0.99933 1.69678 1.26103 1.28666 1.31774 0.84924 0.77064 0.78638 0.77669 1.19719 1.19513 1.19732 1.22929 0.94527 0.96119 0.94080 0.88730 0.92396 0.93212 0.92189 0.91027 0.88389 0.92951 0.89481 0.74749 0.90601 0.91126 0.76033 0.87394 0.89255 0.92187 0.94537 0.87607 0.91657 0.77126 0.91336 0.87889 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.50 6.47 71.98 0.47 0.97 16 3 O -0.39 -7.12 9.53 -129.99 -1.24 -8.36 16 4 C 0.07 0.84 3.13 29.85 0.09 0.93 16 5 H 0.12 0.63 7.79 -2.39 -0.02 0.62 16 6 C -0.17 -1.13 9.48 71.98 0.68 -0.45 16 7 C 0.51 9.36 7.18 87.66 0.63 9.99 16 8 O -0.57 -17.08 16.51 15.95 0.26 -16.81 16 9 N -0.71 -8.45 5.16 -463.06 -2.39 -10.84 16 10 C 0.11 1.88 4.71 86.38 0.41 2.28 16 11 C 0.12 2.06 0.92 -9.61 -0.01 2.06 16 12 O -0.55 -9.08 13.09 -148.98 -1.95 -11.03 16 13 C -0.14 -2.59 5.94 31.98 0.19 -2.40 16 14 C 0.05 1.65 5.74 86.77 0.50 2.15 16 15 N -0.52 -16.97 4.86 -890.09 -4.33 -21.30 16 16 C 0.05 1.97 5.05 85.56 0.43 2.40 16 17 C 0.44 21.54 7.58 87.66 0.66 22.20 16 18 O -0.61 -34.37 14.61 -3.04 -0.04 -34.41 16 19 N -0.58 -30.12 5.29 -306.98 -1.62 -31.74 16 20 C -0.33 -19.15 9.68 84.04 0.81 -18.33 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -50.20 13.05 21.66 0.28 -49.91 16 24 Si 0.99 43.23 29.55 68.60 2.03 45.25 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 28 C 0.05 1.22 6.23 86.65 0.54 1.76 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.49 8.08 -2.39 -0.02 0.47 16 33 H 0.07 0.42 7.87 -2.39 -0.02 0.41 16 34 H 0.10 0.14 7.92 -2.39 -0.02 0.12 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.34 7.87 -2.39 -0.02 0.33 16 37 H 0.41 1.78 7.05 -92.71 -0.65 1.13 16 38 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.39 2.75 7.78 -74.06 -0.58 2.17 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.66 8.02 -2.39 -0.02 1.64 16 43 H 0.06 2.22 7.38 -2.39 -0.02 2.21 16 44 H 0.04 1.16 7.62 -2.39 -0.02 1.14 16 45 H 0.11 3.43 8.03 -2.38 -0.02 3.41 16 46 H 0.07 2.20 7.85 -2.39 -0.02 2.18 16 47 H 0.40 19.74 7.90 -92.71 -0.73 19.00 16 48 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 49 H 0.10 2.26 7.82 -2.39 -0.02 2.24 16 50 H 0.07 1.73 7.47 -2.38 -0.02 1.71 16 Total: -1.00 -82.40 409.75 -3.38 -85.78 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.99 Total: 30.88 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 6.61 Total: 22.50 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -8.06 Total: -113.80 kcal Atomic # 8 Polarization: -67.64 SS G_CDS: -2.97 Total: -70.61 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -82.40 -3.38 -85.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716914905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.775 kcal (2) G-P(sol) polarization free energy of solvation -82.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds