Wall clock time and date at job start Wed Apr 1 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47408 * 2 1 4 4 C 1.42898 * 114.00243 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47028 * 330.00023 * 4 3 2 6 6 C 1.53003 * 109.47132 * 90.00095 * 4 3 2 7 7 C 1.50698 * 109.47037 * 209.99903 * 4 3 2 8 8 O 1.21287 * 120.00230 * 354.99870 * 7 4 3 9 9 N 1.34777 * 120.00300 * 174.99932 * 7 4 3 10 10 C 1.46495 * 120.00512 * 179.97438 * 9 7 4 11 11 C 1.52996 * 109.47322 * 179.97438 * 10 9 7 12 12 O 1.42899 * 110.62673 * 61.89783 * 11 10 9 13 13 C 1.55422 * 110.69515 * 298.62478 * 11 10 9 14 14 C 1.54908 * 101.52379 * 205.97380 * 13 11 10 15 15 N 1.47846 * 104.89238 * 37.06612 * 14 13 11 16 16 C 1.46900 * 111.00020 * 213.57993 * 15 14 13 17 17 C 1.50691 * 109.47462 * 290.12787 * 16 15 14 18 18 O 1.21297 * 119.99984 * 359.97438 * 17 16 15 19 19 N 1.34765 * 120.00337 * 180.02562 * 17 16 15 20 20 C 1.37104 * 120.00200 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00061 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00139 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99904 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00028 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47201 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47401 * 120.00070 * 24 22 20 27 27 H 1.48508 * 109.47085 * 240.00201 * 24 22 20 28 28 C 1.47448 * 108.56553 * 335.84749 * 15 14 13 29 29 H 1.09004 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47155 * 299.99873 * 1 2 3 31 31 H 1.08996 * 109.47265 * 60.00193 * 1 2 3 32 32 H 1.09001 * 109.47478 * 239.99689 * 2 1 3 33 33 H 1.09005 * 109.47399 * 119.99897 * 2 1 3 34 34 H 1.08998 * 109.46887 * 179.97438 * 6 4 3 35 35 H 1.09002 * 109.46761 * 299.99466 * 6 4 3 36 36 H 1.08997 * 109.47222 * 60.00047 * 6 4 3 37 37 H 0.97001 * 119.99798 * 0.02562 * 9 7 4 38 38 H 1.08997 * 109.47376 * 59.99573 * 10 9 7 39 39 H 1.09004 * 109.46945 * 300.00338 * 10 9 7 40 40 H 0.96696 * 114.00308 * 303.10540 * 12 11 10 41 41 H 1.08998 * 111.10859 * 87.90533 * 13 11 10 42 42 H 1.08998 * 111.00401 * 323.99651 * 13 11 10 43 43 H 1.09002 * 110.37460 * 278.18013 * 14 13 11 44 44 H 1.08999 * 110.37548 * 155.95084 * 14 13 11 45 45 H 1.09011 * 109.46590 * 50.12909 * 16 15 14 46 46 H 1.09004 * 109.47038 * 170.12020 * 16 15 14 47 47 H 0.97003 * 120.00380 * 359.97438 * 19 17 16 48 48 H 0.96995 * 120.00150 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.88737 * 120.39623 * 28 15 14 50 50 H 1.08997 * 109.88833 * 241.42257 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8635 0.6015 0.5129 6 6 3.9387 1.5006 -1.4433 7 6 3.8348 2.7262 0.7098 8 8 2.9864 3.5046 1.0913 9 7 5.1387 2.9937 0.9213 10 6 5.5314 4.2249 1.6114 11 6 7.0562 4.2838 1.7213 12 8 7.6537 4.3136 0.4235 13 6 7.5940 3.0841 2.5502 14 6 8.9225 3.6594 3.1012 15 7 8.6298 5.0788 3.3933 16 6 9.8101 5.9199 3.1538 17 6 10.8535 5.6315 4.2021 18 8 10.6352 4.8068 5.0644 19 7 12.0288 6.2906 4.1823 20 6 12.9779 6.0286 5.1364 21 1 12.7839 5.2937 5.9036 22 6 14.1900 6.7079 5.1157 23 7 14.4268 7.6010 4.1812 24 14 15.4833 6.3504 6.4152 25 1 14.9754 5.3111 7.3464 26 1 16.7234 5.8641 5.7588 27 1 15.7792 7.5922 7.1739 28 6 7.4965 5.5070 2.5528 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.0252 1.5871 -1.4437 35 1 3.6466 0.5847 -1.9571 36 1 3.5060 2.3591 -1.9568 37 1 5.8172 2.3714 0.6160 38 1 5.0948 4.2367 2.6101 39 1 5.1736 5.0869 1.0483 40 1 7.4091 3.5664 -0.1394 41 1 7.7776 2.2183 1.9140 42 1 6.9111 2.8326 3.3617 43 1 9.7100 3.5807 2.3516 44 1 9.2134 3.1367 4.0124 45 1 10.2172 5.7019 2.1663 46 1 9.5241 6.9705 3.2050 47 1 12.2034 6.9504 3.4930 48 1 15.2727 8.0754 4.1670 49 1 6.6732 5.8425 3.1834 50 1 7.8098 6.3147 1.8914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716914906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:06 Heat of formation + Delta-G solvation = -158.725620 kcal Electronic energy + Delta-G solvation = -30206.477702 eV Core-core repulsion = 25848.062100 eV Total energy + Delta-G solvation = -4358.415602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.64718 -39.68864 -38.26521 -37.85498 -35.92097 -34.66188 -33.84005 -32.96850 -31.50309 -31.07843 -30.53174 -29.41562 -27.30181 -25.66420 -24.42188 -23.85830 -23.10949 -21.55829 -20.78125 -20.44785 -19.20089 -18.27960 -17.85459 -17.55253 -16.81659 -16.36756 -16.12577 -15.82822 -15.57781 -15.41071 -15.10628 -14.66553 -14.46843 -14.26805 -14.09894 -13.84073 -13.68337 -13.44748 -13.32436 -13.04452 -12.88267 -12.74390 -12.67548 -12.46938 -12.40151 -12.03153 -11.85446 -11.62420 -11.56407 -11.48524 -11.44598 -11.19865 -11.07474 -10.81715 -10.40286 -10.33212 -10.20624 -10.16704 -9.86823 -9.51244 -9.47906 -8.44835 -7.95604 -7.89036 -6.39194 -3.79851 2.22986 2.36280 3.17667 3.27950 3.35078 3.38130 3.76094 3.93817 3.99669 4.12877 4.23764 4.30811 4.33047 4.39587 4.44954 4.60097 4.66075 4.73265 4.87100 4.91469 5.08872 5.13982 5.16984 5.25775 5.26551 5.30862 5.43316 5.43895 5.46126 5.55062 5.59306 5.62551 5.69195 5.82827 5.87404 5.91933 5.94680 6.08875 6.31713 6.38993 6.57275 7.00536 7.18060 7.21895 7.29514 7.57617 7.81398 8.09239 8.64945 9.21044 9.57873 10.09888 10.78775 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.035826 B = 0.001655 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.366019 B =16909.388724 C =17063.378855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.087 0.913 6 C -0.171 4.171 7 C 0.515 3.485 8 O -0.514 6.514 9 N -0.728 5.728 10 C 0.104 3.896 11 C 0.098 3.902 12 O -0.544 6.544 13 C -0.154 4.154 14 C 0.058 3.942 15 N -0.500 5.500 16 C 0.040 3.960 17 C 0.446 3.554 18 O -0.578 6.578 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.057 3.943 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.397 0.603 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.370 0.630 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.094 0.906 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.451 -14.059 -13.998 29.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.010 3.990 5 H 0.105 0.895 6 C -0.228 4.228 7 C 0.300 3.700 8 O -0.387 6.387 9 N -0.383 5.383 10 C -0.020 4.020 11 C 0.056 3.944 12 O -0.349 6.349 13 C -0.193 4.193 14 C -0.069 4.069 15 N -0.224 5.224 16 C -0.091 4.091 17 C 0.231 3.769 18 O -0.462 6.462 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.072 4.072 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.217 0.783 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.113 0.887 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.112 0.888 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.052 -13.136 -12.380 28.497 hybrid contribution 1.396 -0.794 -1.099 1.947 sum -20.656 -13.930 -13.479 28.326 Atomic orbital electron populations 1.21732 0.93282 1.02329 1.03511 1.22615 0.96110 0.83337 1.00157 1.88068 1.18116 1.26514 1.94924 1.21865 0.84101 0.96320 0.96743 0.89547 1.22241 1.01596 1.04028 0.94979 1.20384 0.82381 0.87758 0.79519 1.90753 1.50014 1.48606 1.49357 1.45862 1.07193 1.24345 1.60928 1.22015 0.94342 0.86915 0.98741 1.22865 0.89842 0.97762 0.83971 1.86675 1.72868 1.50401 1.24941 1.23474 0.98980 0.96832 0.99968 1.22967 0.94808 0.88474 1.00699 1.63366 1.04851 1.02552 1.51620 1.22131 0.91284 0.98145 0.97565 1.19732 0.83482 0.85606 0.88107 1.90503 1.79403 1.36773 1.39534 1.41865 1.13295 1.36889 1.28276 1.19745 0.93858 1.21506 1.07589 0.87901 1.25252 0.98481 0.96151 0.98114 1.69621 1.25519 1.25667 1.33584 0.85810 0.80011 0.78321 0.80247 1.19253 1.20830 1.20774 1.22854 0.95705 0.95091 0.93502 0.90921 0.91582 0.91705 0.93127 0.93133 0.90923 0.91057 0.90905 0.76892 0.89759 0.90233 0.78331 0.90781 0.89526 0.93572 0.88706 0.92964 0.89380 0.77518 0.91977 0.88801 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.05 0.33 6.47 37.16 0.24 0.57 16 3 O -0.36 -3.41 9.53 -55.09 -0.52 -3.93 16 4 C 0.07 0.50 3.13 -27.88 -0.09 0.42 16 5 H 0.09 0.40 7.79 -51.93 -0.40 -0.01 16 6 C -0.17 -0.82 9.48 37.16 0.35 -0.47 16 7 C 0.51 5.07 7.18 -10.99 -0.08 4.99 16 8 O -0.51 -7.60 16.51 -14.31 -0.24 -7.84 16 9 N -0.73 -5.25 5.09 -60.30 -0.31 -5.56 16 10 C 0.10 0.94 4.75 -4.05 -0.02 0.92 16 11 C 0.10 0.97 0.93 -88.64 -0.08 0.89 16 12 O -0.54 -5.34 13.11 -35.23 -0.46 -5.80 16 13 C -0.15 -1.58 5.73 -24.44 -0.14 -1.72 16 14 C 0.06 0.88 5.76 -2.30 -0.01 0.87 16 15 N -0.50 -8.23 4.85 -232.68 -1.13 -9.36 16 16 C 0.04 0.74 5.07 -4.98 -0.03 0.71 16 17 C 0.45 10.60 7.58 -10.99 -0.08 10.52 16 18 O -0.58 -15.62 14.67 5.54 0.08 -15.54 16 19 N -0.57 -14.48 5.29 -10.97 -0.06 -14.54 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 24 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.06 0.72 6.22 -2.83 -0.02 0.70 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.22 7.87 -51.93 -0.41 -0.19 16 33 H 0.05 0.26 8.09 -51.93 -0.42 -0.16 16 34 H 0.07 0.20 7.92 -51.93 -0.41 -0.21 16 35 H 0.07 0.26 7.87 -51.93 -0.41 -0.15 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.40 1.67 7.08 -40.82 -0.29 1.38 16 38 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.37 2.12 8.05 45.56 0.37 2.48 16 41 H 0.07 0.57 8.04 -51.93 -0.42 0.16 16 42 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 43 H 0.05 0.74 7.61 -51.93 -0.40 0.34 16 44 H 0.09 1.69 7.41 -51.93 -0.38 1.31 16 45 H 0.05 0.90 7.83 -51.92 -0.41 0.50 16 46 H 0.09 1.46 8.01 -51.93 -0.42 1.05 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.09 1.09 7.79 -51.93 -0.40 0.68 16 50 H 0.07 0.90 7.47 -51.93 -0.39 0.51 16 LS Contribution 409.76 15.07 6.17 6.17 Total: -1.00 -36.30 409.76 -8.14 -44.45 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -7.57 Total: 9.88 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 0.19 Total: 9.94 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.77 Total: -53.44 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.14 Total: -33.11 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.30 -8.14 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716914906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.278 kcal (2) G-P(sol) polarization free energy of solvation -36.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds