Wall clock time and date at job start Wed Apr 1 2020 01:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47366 * 2 1 4 4 H 1.09005 * 109.47347 * 304.76197 * 3 2 1 5 5 O 1.42892 * 109.47239 * 64.75928 * 3 2 1 6 6 C 1.42894 * 114.00516 * 256.08689 * 5 3 2 7 7 C 1.50706 * 109.46956 * 184.76460 * 3 2 1 8 8 O 1.21288 * 119.99416 * 244.99616 * 7 3 2 9 9 N 1.34771 * 120.00535 * 65.00183 * 7 3 2 10 10 C 1.46499 * 120.00294 * 180.02562 * 9 7 3 11 11 C 1.53003 * 109.47107 * 179.97438 * 10 9 7 12 12 O 1.42900 * 110.76760 * 61.79599 * 11 10 9 13 13 C 1.55434 * 110.69141 * 298.62164 * 11 10 9 14 14 C 1.54903 * 101.51814 * 205.97234 * 13 11 10 15 15 N 1.47844 * 104.89315 * 37.07059 * 14 13 11 16 16 C 1.46910 * 110.99775 * 213.57791 * 15 14 13 17 17 C 1.50700 * 109.46893 * 176.57159 * 16 15 14 18 18 O 1.21295 * 120.00260 * 5.74113 * 17 16 15 19 19 N 1.34772 * 119.99683 * 185.73972 * 17 16 15 20 20 C 1.37099 * 119.99852 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00263 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99930 * 180.02562 * 20 19 17 23 23 N 1.31420 * 120.00013 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00158 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47200 * 89.99906 * 24 22 20 26 26 H 1.48504 * 109.47252 * 209.99988 * 24 22 20 27 27 H 1.48499 * 109.46947 * 330.00052 * 24 22 20 28 28 C 1.47446 * 108.56527 * 335.84096 * 15 14 13 29 29 H 1.09002 * 109.47059 * 294.59312 * 1 2 3 30 30 H 1.09004 * 109.47040 * 54.58435 * 1 2 3 31 31 H 1.09001 * 109.47181 * 174.58888 * 1 2 3 32 32 H 1.09004 * 109.47032 * 239.99643 * 2 1 3 33 33 H 1.08998 * 109.47290 * 120.00394 * 2 1 3 34 34 H 1.09004 * 109.47187 * 185.53642 * 6 5 3 35 35 H 1.09001 * 109.47265 * 305.53429 * 6 5 3 36 36 H 1.09003 * 109.46992 * 65.53674 * 6 5 3 37 37 H 0.97009 * 119.99683 * 359.97438 * 9 7 3 38 38 H 1.08991 * 109.46970 * 59.99777 * 10 9 7 39 39 H 1.09001 * 109.46832 * 299.99159 * 10 9 7 40 40 H 0.96703 * 114.00120 * 303.20210 * 12 11 10 41 41 H 1.09006 * 111.10010 * 87.90696 * 13 11 10 42 42 H 1.08992 * 111.00109 * 323.99937 * 13 11 10 43 43 H 1.08998 * 110.37658 * 278.17777 * 14 13 11 44 44 H 1.08999 * 110.37090 * 155.94972 * 14 13 11 45 45 H 1.08995 * 109.46835 * 296.57241 * 16 15 14 46 46 H 1.08998 * 109.46803 * 56.57004 * 16 15 14 47 47 H 0.96995 * 120.00143 * 0.02562 * 19 17 16 48 48 H 0.96998 * 119.99501 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.88363 * 120.40013 * 28 15 14 50 50 H 1.08999 * 109.89145 * 241.42261 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6088 1.9804 -0.8443 5 8 1.6572 2.0830 1.2186 6 6 0.5617 2.9898 1.0794 7 6 3.5425 1.4440 -0.1180 8 8 4.2220 1.8620 0.7955 9 7 4.1310 0.9809 -1.2386 10 6 5.5915 0.9819 -1.3530 11 6 5.9969 0.4088 -2.7125 12 8 5.4853 1.2154 -3.7753 13 6 5.5116 -1.0609 -2.8557 14 6 6.5349 -1.6269 -3.8717 15 7 7.8180 -0.9840 -3.5167 16 6 8.6373 -0.7480 -4.7131 17 6 9.8966 -0.0177 -4.3235 18 8 10.1426 0.1852 -3.1532 19 7 10.7495 0.4098 -5.2754 20 6 11.8955 1.0737 -4.9209 21 1 12.1145 1.2545 -3.8790 22 6 12.7745 1.5150 -5.9024 23 7 13.8728 2.1519 -5.5626 24 14 12.3954 1.2031 -7.7046 25 1 11.6088 2.3390 -8.2488 26 1 13.6658 1.0727 -8.4624 27 1 11.6100 -0.0505 -7.8354 28 6 7.5313 0.2805 -2.8148 29 1 -0.3633 0.4277 0.9345 30 1 -0.3633 0.5956 -0.8375 31 1 -0.3633 -1.0231 -0.0969 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.3959 3.5071 2.0244 35 1 0.7898 3.7185 0.3015 36 1 -0.3362 2.4356 0.8061 37 1 3.5874 0.6463 -1.9691 38 1 6.0185 0.3695 -0.5590 39 1 5.9622 2.0031 -1.2637 40 1 4.5249 1.3275 -3.7569 41 1 4.4990 -1.1024 -3.2572 42 1 5.5744 -1.5875 -1.9036 43 1 6.2461 -1.3619 -4.8888 44 1 6.6118 -2.7093 -3.7696 45 1 8.8975 -1.7031 -5.1694 46 1 8.0740 -0.1461 -5.4262 47 1 10.5526 0.2478 -6.2112 48 1 14.4866 2.4596 -6.2478 49 1 7.9689 0.2581 -1.8168 50 1 7.9391 1.1189 -3.3796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724385711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:23 Heat of formation + Delta-G solvation = -149.887399 kcal Electronic energy + Delta-G solvation = -30822.822163 eV Core-core repulsion = 26464.789815 eV Total energy + Delta-G solvation = -4358.032348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65371 -39.78169 -38.35004 -37.84957 -35.95712 -34.69203 -33.92926 -33.71799 -31.73630 -31.32234 -29.75638 -28.73587 -27.24555 -26.28870 -24.95176 -23.82233 -22.65137 -21.46593 -20.77320 -20.50975 -19.29925 -18.30862 -18.19262 -17.54881 -16.97713 -16.25338 -15.92652 -15.87488 -15.52963 -15.45684 -15.15316 -14.85017 -14.72079 -14.42118 -14.19597 -14.00100 -13.73509 -13.48325 -13.07851 -13.00965 -12.93790 -12.59286 -12.56048 -12.44759 -12.36490 -12.17742 -11.96120 -11.88627 -11.74787 -11.54175 -11.35247 -11.30750 -11.05972 -10.89478 -10.58204 -10.50678 -10.18697 -9.95959 -9.71272 -9.53625 -9.43153 -8.51507 -8.16412 -8.08359 -6.29461 -3.80723 2.27958 2.48430 3.03821 3.08063 3.16038 3.47286 3.75187 3.84678 3.97146 4.11661 4.14995 4.26124 4.27851 4.34954 4.43996 4.63566 4.67258 4.79384 4.83777 4.88831 4.97753 5.09532 5.13433 5.20141 5.23455 5.24488 5.36657 5.43311 5.53428 5.57510 5.59558 5.66734 5.68007 5.69608 5.77942 5.89047 5.91422 6.00058 6.07690 6.33801 6.54968 7.05582 7.08838 7.13180 7.35078 7.59746 7.88755 8.15839 8.61334 8.96579 9.43944 9.83983 10.83602 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.002028 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.593010 B =13804.231870 C =14288.686955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.136 4.136 3 C 0.074 3.926 4 H 0.088 0.912 5 O -0.356 6.356 6 C 0.025 3.975 7 C 0.507 3.493 8 O -0.512 6.512 9 N -0.729 5.729 10 C 0.103 3.897 11 C 0.093 3.907 12 O -0.543 6.543 13 C -0.152 4.152 14 C 0.045 3.955 15 N -0.503 5.503 16 C 0.037 3.963 17 C 0.450 3.550 18 O -0.561 6.561 19 N -0.590 5.590 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.077 3.923 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.395 0.605 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.367 0.633 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.051 0.949 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.101 0.899 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.345 -5.348 3.462 31.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C 0.012 3.988 4 H 0.106 0.894 5 O -0.273 6.273 6 C -0.072 4.072 7 C 0.291 3.709 8 O -0.385 6.385 9 N -0.384 5.384 10 C -0.021 4.021 11 C 0.051 3.949 12 O -0.348 6.348 13 C -0.190 4.190 14 C -0.083 4.083 15 N -0.227 5.227 16 C -0.095 4.095 17 C 0.236 3.764 18 O -0.443 6.443 19 N -0.229 5.229 20 C -0.432 4.432 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.052 4.052 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.229 0.771 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.213 0.787 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.119 0.881 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -29.418 -5.109 5.228 30.312 hybrid contribution -1.550 0.236 -2.626 3.059 sum -30.968 -4.872 2.602 31.457 Atomic orbital electron populations 1.21821 0.94642 1.02419 1.02182 1.21934 0.97225 0.94520 1.03749 1.22055 0.91755 0.95502 0.89492 0.89412 1.88047 1.51224 1.59131 1.28894 1.23012 0.88809 0.92331 1.03002 1.20646 0.90124 0.77808 0.82303 1.90767 1.65131 1.44381 1.38240 1.45917 1.07893 1.65860 1.18729 1.22015 0.79351 1.03230 0.97492 1.23048 0.97212 0.89370 0.85310 1.86725 1.25862 1.72192 1.50014 1.23405 0.98793 0.95709 1.01073 1.23023 0.88128 0.99799 0.97303 1.63448 1.14454 1.22371 1.22394 1.22149 0.94555 1.00775 0.91991 1.19634 0.85671 0.84560 0.86564 1.90569 1.76205 1.59696 1.17828 1.42205 1.21281 1.52458 1.06997 1.19430 0.95642 1.30994 0.97162 0.86232 1.25044 0.95645 0.97085 0.98436 1.69627 1.10872 1.37624 1.33978 0.86674 0.78757 0.78743 0.85237 1.19666 1.20177 1.19489 1.22711 0.88161 0.92164 1.02118 0.91932 0.92652 0.91912 0.90460 0.90145 0.89133 0.93773 0.93502 0.77120 0.89626 0.90018 0.78674 0.90754 0.89382 0.93273 0.90060 0.89023 0.93050 0.79725 0.91635 0.88051 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.93 37.16 0.33 -0.30 16 2 C -0.14 -0.74 5.61 -26.73 -0.15 -0.89 16 3 C 0.07 0.55 2.67 -27.88 -0.07 0.47 16 4 H 0.09 0.42 7.59 -51.93 -0.39 0.03 16 5 O -0.36 -3.48 9.61 -55.09 -0.53 -4.01 16 6 C 0.02 0.15 10.48 101.05 1.06 1.21 16 7 C 0.51 5.39 7.18 -10.99 -0.08 5.31 16 8 O -0.51 -8.18 16.51 -14.31 -0.24 -8.42 16 9 N -0.73 -5.83 5.03 -60.29 -0.30 -6.13 16 10 C 0.10 1.12 4.75 -4.04 -0.02 1.10 16 11 C 0.09 1.03 0.93 -88.64 -0.08 0.94 16 12 O -0.54 -5.89 13.11 -35.23 -0.46 -6.35 16 13 C -0.15 -1.33 5.72 -24.43 -0.14 -1.47 16 14 C 0.05 0.51 6.71 -2.30 -0.02 0.49 16 15 N -0.50 -7.92 5.07 -232.69 -1.18 -9.10 16 16 C 0.04 0.63 5.29 -4.97 -0.03 0.61 16 17 C 0.45 10.30 6.96 -10.99 -0.08 10.23 16 18 O -0.56 -14.93 14.32 5.54 0.08 -14.85 16 19 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 20 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 23 N -0.88 -25.95 13.96 55.50 0.77 -25.17 16 24 Si 0.88 19.55 27.74 -169.99 -4.71 14.84 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 28 C 0.08 1.22 4.56 -2.84 -0.01 1.21 16 29 H 0.06 0.30 6.80 -51.93 -0.35 -0.05 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.28 7.77 -51.93 -0.40 -0.13 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.04 0.23 8.01 -51.93 -0.42 -0.19 16 36 H 0.05 0.19 6.34 -51.93 -0.33 -0.14 16 37 H 0.39 1.77 7.00 -40.82 -0.29 1.48 16 38 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.37 2.29 8.06 45.56 0.37 2.66 16 41 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 42 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 43 H 0.05 0.53 7.72 -51.93 -0.40 0.13 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.05 0.80 8.01 -51.93 -0.42 0.39 16 47 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 49 H 0.10 1.76 7.68 -51.93 -0.40 1.36 16 50 H 0.08 1.44 6.65 -51.93 -0.35 1.10 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -37.57 400.90 -7.50 -45.07 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.38 Total: 11.20 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 0.47 Total: 11.14 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.76 Total: -54.67 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.15 Total: -33.63 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.57 -7.50 -45.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724385711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.814 kcal (2) G-P(sol) polarization free energy of solvation -37.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds