Wall clock time and date at job start Wed Apr 1 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47366 * 2 1 4 4 H 1.09005 * 109.47347 * 304.76197 * 3 2 1 5 5 O 1.42892 * 109.47239 * 64.75928 * 3 2 1 6 6 C 1.42894 * 114.00516 * 256.08689 * 5 3 2 7 7 C 1.50706 * 109.46956 * 184.76460 * 3 2 1 8 8 O 1.21288 * 119.99416 * 244.99616 * 7 3 2 9 9 N 1.34771 * 120.00535 * 65.00183 * 7 3 2 10 10 C 1.46499 * 120.00294 * 180.02562 * 9 7 3 11 11 C 1.53003 * 109.47107 * 179.97438 * 10 9 7 12 12 O 1.42900 * 110.76760 * 61.79599 * 11 10 9 13 13 C 1.55434 * 110.69141 * 298.62164 * 11 10 9 14 14 C 1.54903 * 101.51814 * 205.97234 * 13 11 10 15 15 N 1.47844 * 104.89315 * 37.07059 * 14 13 11 16 16 C 1.46910 * 110.99775 * 213.57791 * 15 14 13 17 17 C 1.50700 * 109.46893 * 176.57159 * 16 15 14 18 18 O 1.21295 * 120.00260 * 5.74113 * 17 16 15 19 19 N 1.34772 * 119.99683 * 185.73972 * 17 16 15 20 20 C 1.37099 * 119.99852 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00263 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99930 * 180.02562 * 20 19 17 23 23 N 1.31420 * 120.00013 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00158 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47200 * 89.99906 * 24 22 20 26 26 H 1.48504 * 109.47252 * 209.99988 * 24 22 20 27 27 H 1.48499 * 109.46947 * 330.00052 * 24 22 20 28 28 C 1.47446 * 108.56527 * 335.84096 * 15 14 13 29 29 H 1.09002 * 109.47059 * 294.59312 * 1 2 3 30 30 H 1.09004 * 109.47040 * 54.58435 * 1 2 3 31 31 H 1.09001 * 109.47181 * 174.58888 * 1 2 3 32 32 H 1.09004 * 109.47032 * 239.99643 * 2 1 3 33 33 H 1.08998 * 109.47290 * 120.00394 * 2 1 3 34 34 H 1.09004 * 109.47187 * 185.53642 * 6 5 3 35 35 H 1.09001 * 109.47265 * 305.53429 * 6 5 3 36 36 H 1.09003 * 109.46992 * 65.53674 * 6 5 3 37 37 H 0.97009 * 119.99683 * 359.97438 * 9 7 3 38 38 H 1.08991 * 109.46970 * 59.99777 * 10 9 7 39 39 H 1.09001 * 109.46832 * 299.99159 * 10 9 7 40 40 H 0.96703 * 114.00120 * 303.20210 * 12 11 10 41 41 H 1.09006 * 111.10010 * 87.90696 * 13 11 10 42 42 H 1.08992 * 111.00109 * 323.99937 * 13 11 10 43 43 H 1.08998 * 110.37658 * 278.17777 * 14 13 11 44 44 H 1.08999 * 110.37090 * 155.94972 * 14 13 11 45 45 H 1.08995 * 109.46835 * 296.57241 * 16 15 14 46 46 H 1.08998 * 109.46803 * 56.57004 * 16 15 14 47 47 H 0.96995 * 120.00143 * 0.02562 * 19 17 16 48 48 H 0.96998 * 119.99501 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.88363 * 120.40013 * 28 15 14 50 50 H 1.08999 * 109.89145 * 241.42261 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6088 1.9804 -0.8443 5 8 1.6572 2.0830 1.2186 6 6 0.5617 2.9898 1.0794 7 6 3.5425 1.4440 -0.1180 8 8 4.2220 1.8620 0.7955 9 7 4.1310 0.9809 -1.2386 10 6 5.5915 0.9819 -1.3530 11 6 5.9969 0.4088 -2.7125 12 8 5.4853 1.2154 -3.7753 13 6 5.5116 -1.0609 -2.8557 14 6 6.5349 -1.6269 -3.8717 15 7 7.8180 -0.9840 -3.5167 16 6 8.6373 -0.7480 -4.7131 17 6 9.8966 -0.0177 -4.3235 18 8 10.1426 0.1852 -3.1532 19 7 10.7495 0.4098 -5.2754 20 6 11.8955 1.0737 -4.9209 21 1 12.1145 1.2545 -3.8790 22 6 12.7745 1.5150 -5.9024 23 7 13.8728 2.1519 -5.5626 24 14 12.3954 1.2031 -7.7046 25 1 11.6088 2.3390 -8.2488 26 1 13.6658 1.0727 -8.4624 27 1 11.6100 -0.0505 -7.8354 28 6 7.5313 0.2805 -2.8148 29 1 -0.3633 0.4277 0.9345 30 1 -0.3633 0.5956 -0.8375 31 1 -0.3633 -1.0231 -0.0969 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.3959 3.5071 2.0244 35 1 0.7898 3.7185 0.3015 36 1 -0.3362 2.4356 0.8061 37 1 3.5874 0.6463 -1.9691 38 1 6.0185 0.3695 -0.5590 39 1 5.9622 2.0031 -1.2637 40 1 4.5249 1.3275 -3.7569 41 1 4.4990 -1.1024 -3.2572 42 1 5.5744 -1.5875 -1.9036 43 1 6.2461 -1.3619 -4.8888 44 1 6.6118 -2.7093 -3.7696 45 1 8.8975 -1.7031 -5.1694 46 1 8.0740 -0.1461 -5.4262 47 1 10.5526 0.2478 -6.2112 48 1 14.4866 2.4596 -6.2478 49 1 7.9689 0.2581 -1.8168 50 1 7.9391 1.1189 -3.3796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724385711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:22 Heat of formation + Delta-G solvation = -184.683020 kcal Electronic energy + Delta-G solvation = -30824.331015 eV Core-core repulsion = 26464.789815 eV Total energy + Delta-G solvation = -4359.541199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55656 -40.86356 -39.83350 -38.67847 -37.09458 -35.94189 -35.54395 -34.22099 -33.78304 -32.44927 -30.64836 -29.41573 -28.52875 -27.16978 -26.10050 -25.22986 -23.16347 -22.40029 -21.74231 -21.46237 -21.19338 -20.11905 -19.06213 -18.24517 -17.94754 -17.43884 -16.96426 -16.87354 -16.68971 -16.57572 -16.32200 -15.98873 -15.73456 -15.46685 -15.24430 -14.93339 -14.82323 -14.59911 -14.28884 -14.22454 -14.16738 -13.85801 -13.61838 -13.43188 -13.27023 -13.07509 -12.99886 -12.82160 -12.60765 -12.43266 -12.42012 -12.30630 -12.20854 -12.00328 -11.93285 -11.74108 -11.50163 -11.19291 -11.02378 -10.41539 -10.39568 -10.29844 -10.25362 -9.29181 -8.42510 -6.03516 1.28658 1.34296 1.43384 1.47073 1.75374 1.93377 2.21919 2.66045 2.93016 2.98991 3.13112 3.15209 3.43037 3.51184 3.59591 3.76871 3.82877 3.93074 4.12804 4.21444 4.33729 4.34403 4.39173 4.41231 4.45997 4.51612 4.56012 4.58594 4.66809 4.72080 4.81870 4.85648 4.88721 4.98939 5.06266 5.08439 5.13452 5.18360 5.21285 5.40408 5.51267 5.84100 5.93321 6.03435 6.07695 6.43617 6.57997 6.72898 6.86508 7.13618 7.37529 7.94398 8.75182 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.002028 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.593010 B =13804.231870 C =14288.686955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.077 3.923 4 H 0.123 0.877 5 O -0.393 6.393 6 C 0.019 3.981 7 C 0.502 3.498 8 O -0.577 6.577 9 N -0.704 5.704 10 C 0.111 3.889 11 C 0.112 3.888 12 O -0.556 6.556 13 C -0.138 4.138 14 C 0.042 3.958 15 N -0.525 5.525 16 C 0.051 3.949 17 C 0.447 3.553 18 O -0.608 6.608 19 N -0.591 5.591 20 C -0.328 4.328 21 H 0.054 0.946 22 C -0.017 4.017 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.230 1.230 28 C 0.075 3.925 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.418 0.582 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.390 0.610 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.123 0.877 46 H 0.075 0.925 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.068 0.932 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.861 -7.574 -0.420 36.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.016 3.984 4 H 0.140 0.860 5 O -0.312 6.312 6 C -0.077 4.077 7 C 0.289 3.711 8 O -0.455 6.455 9 N -0.360 5.360 10 C -0.014 4.014 11 C 0.070 3.930 12 O -0.364 6.364 13 C -0.176 4.176 14 C -0.085 4.085 15 N -0.249 5.249 16 C -0.080 4.080 17 C 0.235 3.765 18 O -0.492 6.492 19 N -0.233 5.233 20 C -0.457 4.457 21 H 0.072 0.928 22 C -0.216 4.216 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.153 1.153 28 C -0.054 4.054 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.256 0.744 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.241 0.759 41 H 0.140 0.860 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.116 0.884 45 H 0.141 0.859 46 H 0.093 0.907 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -34.017 -7.373 1.305 34.831 hybrid contribution -0.130 0.984 -1.263 1.606 sum -34.146 -6.389 0.043 34.739 Atomic orbital electron populations 1.21810 0.93304 1.03266 1.02414 1.21953 0.98286 0.92840 1.03929 1.22233 0.88951 0.97222 0.90024 0.85981 1.88006 1.52584 1.60031 1.30542 1.23189 0.88662 0.92344 1.03463 1.21465 0.91657 0.76375 0.81649 1.90742 1.66767 1.47365 1.40601 1.45624 1.06614 1.64857 1.18903 1.21700 0.81100 1.01250 0.97342 1.22585 0.93965 0.91412 0.85057 1.86673 1.28141 1.72255 1.49337 1.23422 1.00547 0.92646 1.00981 1.23213 0.86181 1.00361 0.98718 1.63405 1.17224 1.22064 1.22238 1.22065 0.91550 1.01487 0.92922 1.20923 0.86836 0.83077 0.85685 1.90554 1.77530 1.60986 1.20158 1.42027 1.20308 1.52680 1.08257 1.18988 0.98367 1.33505 0.94830 0.92810 1.26151 0.94640 0.95806 1.04957 1.69814 1.12385 1.38776 1.36522 0.85353 0.79329 0.80614 0.76152 1.18245 1.19829 1.15332 1.22462 0.91829 0.91235 0.99842 0.93025 0.90804 0.91073 0.87827 0.92438 0.89196 0.92990 0.91268 0.74383 0.91207 0.92945 0.75938 0.86035 0.89221 0.91665 0.88378 0.85912 0.90677 0.77533 0.91135 0.91333 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.93 71.98 0.64 -0.09 16 2 C -0.13 -1.07 5.61 30.59 0.17 -0.90 16 3 C 0.08 0.99 2.67 29.85 0.08 1.07 16 4 H 0.12 0.70 7.59 -2.38 -0.02 0.68 16 5 O -0.39 -7.46 9.61 -129.99 -1.25 -8.71 16 6 C 0.02 0.20 10.48 113.37 1.19 1.39 16 7 C 0.50 10.39 7.18 87.66 0.63 11.02 16 8 O -0.58 -19.41 16.51 15.93 0.26 -19.14 16 9 N -0.70 -9.98 5.03 -463.06 -2.33 -12.31 16 10 C 0.11 2.46 4.75 86.38 0.41 2.87 16 11 C 0.11 2.33 0.93 -9.51 -0.01 2.32 16 12 O -0.56 -10.50 13.11 -148.98 -1.95 -12.45 16 13 C -0.14 -1.86 5.72 32.08 0.18 -1.68 16 14 C 0.04 0.77 6.71 86.77 0.58 1.35 16 15 N -0.52 -15.87 5.07 -890.11 -4.51 -20.38 16 16 C 0.05 1.64 5.29 85.56 0.45 2.09 16 17 C 0.45 20.94 6.96 87.66 0.61 21.55 16 18 O -0.61 -34.62 14.32 -3.08 -0.04 -34.66 16 19 N -0.59 -28.76 5.09 -306.99 -1.56 -30.33 16 20 C -0.33 -19.69 10.16 84.04 0.85 -18.84 16 21 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 22 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 23 N -0.93 -57.43 13.96 21.67 0.30 -57.13 16 24 Si 0.97 39.50 27.74 68.60 1.90 41.40 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.23 -7.89 6.52 99.48 0.65 -7.25 16 28 C 0.08 2.49 4.56 86.64 0.40 2.88 16 29 H 0.05 0.38 6.80 -2.39 -0.02 0.36 16 30 H 0.07 0.11 8.14 -2.38 -0.02 0.09 16 31 H 0.07 0.25 8.14 -2.39 -0.02 0.24 16 32 H 0.10 0.26 7.77 -2.39 -0.02 0.25 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.44 8.01 -2.39 -0.02 0.42 16 36 H 0.07 0.39 6.34 -2.39 -0.02 0.37 16 37 H 0.42 1.94 7.00 -92.70 -0.65 1.29 16 38 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.39 3.13 8.06 -74.05 -0.60 2.53 16 41 H 0.12 0.58 8.04 -2.38 -0.02 0.56 16 42 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 43 H 0.07 1.04 7.72 -2.39 -0.02 1.02 16 44 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.08 2.09 8.01 -2.39 -0.02 2.08 16 47 H 0.39 15.69 5.76 -92.71 -0.53 15.16 16 48 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 49 H 0.07 2.64 7.68 -2.39 -0.02 2.62 16 50 H 0.03 1.39 6.65 -2.39 -0.02 1.38 16 Total: -1.00 -94.15 400.90 -3.39 -97.53 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: -0.86 Total: 31.63 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 6.66 Total: 24.53 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -8.10 Total: -120.14 kcal Atomic # 8 Polarization: -71.98 SS G_CDS: -2.98 Total: -74.96 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.90 Total: 41.40 kcal Total: -94.15 -3.39 -97.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724385711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.148 kcal (2) G-P(sol) polarization free energy of solvation -94.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds