Wall clock time and date at job start Wed Apr 1 2020 01:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47092 * 2 1 4 4 H 1.08995 * 109.46654 * 55.31777 * 3 2 1 5 5 O 1.42895 * 109.46900 * 295.31671 * 3 2 1 6 6 C 1.42907 * 114.00095 * 106.64862 * 5 3 2 7 7 C 1.50700 * 109.47173 * 175.31746 * 3 2 1 8 8 O 1.21279 * 119.99980 * 114.99902 * 7 3 2 9 9 N 1.34786 * 119.99787 * 294.99967 * 7 3 2 10 10 C 1.46496 * 119.99550 * 180.02562 * 9 7 3 11 11 C 1.53001 * 109.46574 * 180.02562 * 10 9 7 12 12 O 1.42899 * 110.63372 * 61.89489 * 11 10 9 13 13 C 1.55438 * 110.69290 * 298.62085 * 11 10 9 14 14 C 1.54910 * 101.52031 * 205.97856 * 13 11 10 15 15 N 1.47845 * 104.89418 * 37.06404 * 14 13 11 16 16 C 1.46893 * 110.99991 * 213.57882 * 15 14 13 17 17 C 1.50701 * 109.47258 * 176.38736 * 16 15 14 18 18 O 1.21296 * 119.99823 * 5.82904 * 17 16 15 19 19 N 1.34781 * 120.00158 * 185.83139 * 17 16 15 20 20 C 1.37093 * 119.99955 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00334 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99964 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00157 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00283 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47093 * 59.99814 * 24 22 20 26 26 H 1.48497 * 109.47384 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47305 * 300.00184 * 24 22 20 28 28 C 1.47440 * 108.56890 * 335.84745 * 15 14 13 29 29 H 1.08999 * 109.46990 * 299.96696 * 1 2 3 30 30 H 1.08996 * 109.47244 * 59.97164 * 1 2 3 31 31 H 1.08998 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47151 * 240.00108 * 2 1 3 33 33 H 1.09003 * 109.47456 * 119.99867 * 2 1 3 34 34 H 1.09001 * 109.47127 * 185.51061 * 6 5 3 35 35 H 1.08997 * 109.46504 * 305.51167 * 6 5 3 36 36 H 1.08993 * 109.47133 * 65.50826 * 6 5 3 37 37 H 0.97000 * 119.99779 * 0.02562 * 9 7 3 38 38 H 1.08996 * 109.47372 * 59.99969 * 10 9 7 39 39 H 1.09002 * 109.47164 * 299.99538 * 10 9 7 40 40 H 0.96695 * 113.99856 * 303.10256 * 12 11 10 41 41 H 1.08998 * 111.10252 * 87.90763 * 13 11 10 42 42 H 1.09004 * 110.99816 * 323.99829 * 13 11 10 43 43 H 1.08995 * 110.37155 * 278.17698 * 14 13 11 44 44 H 1.09004 * 110.37053 * 155.95177 * 14 13 11 45 45 H 1.09000 * 109.47434 * 296.38572 * 16 15 14 46 46 H 1.09000 * 109.47022 * 56.38541 * 16 15 14 47 47 H 0.97001 * 119.99781 * 0.02562 * 19 17 16 48 48 H 0.96995 * 120.00003 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.88770 * 120.39112 * 28 15 14 50 50 H 1.08989 * 109.89207 * 241.41841 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6097 1.9799 0.8451 5 8 1.6556 2.0836 -1.2179 6 6 0.6010 3.0360 -1.0657 7 6 3.5425 1.4442 0.1160 8 8 4.2208 1.8626 -0.7982 9 7 4.1325 0.9805 1.2357 10 6 5.5931 0.9826 1.3486 11 6 6.0002 0.4086 2.7072 12 8 5.5651 -0.9467 2.8320 13 6 5.4345 1.2799 3.8634 14 6 6.4498 0.9876 4.9963 15 7 7.7582 0.8822 4.3162 16 6 8.6210 -0.1013 4.9840 17 6 9.9079 -0.2460 4.2134 18 8 10.1341 0.4804 3.2687 19 7 10.8077 -1.1826 4.5738 20 6 11.9782 -1.3145 3.8724 21 1 12.1796 -0.6677 3.0313 22 6 12.9055 -2.2804 4.2437 23 7 12.6603 -3.0678 5.2668 24 14 14.5007 -2.4597 3.2884 25 1 15.2628 -1.1868 3.3541 26 1 15.3123 -3.5530 3.8810 27 1 14.1956 -2.7814 1.8711 28 6 7.5269 0.5122 2.9078 29 1 -0.3633 0.5133 0.8903 30 1 -0.3633 0.5143 -0.8897 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.3012 3.4059 -2.0462 35 1 -0.2512 2.5599 -0.5808 36 1 0.9487 3.8684 -0.4540 37 1 3.5899 0.6455 1.9666 38 1 5.9629 2.0041 1.2597 39 1 6.0198 0.3711 0.5536 40 1 4.6128 -1.0665 2.7145 41 1 4.4322 0.9565 4.1442 42 1 5.4416 2.3366 3.5958 43 1 6.2038 0.0493 5.4934 44 1 6.4610 1.8060 5.7162 45 1 8.8401 0.2360 5.9971 46 1 8.1112 -1.0640 5.0239 47 1 10.6266 -1.7638 5.3290 48 1 13.3074 -3.7423 5.5257 49 1 7.9360 1.2797 2.2507 50 1 7.9973 -0.4475 2.6945 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724385715.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:33 Heat of formation + Delta-G solvation = -157.379545 kcal Electronic energy + Delta-G solvation = -30768.757954 eV Core-core repulsion = 26410.400723 eV Total energy + Delta-G solvation = -4358.357232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61935 -39.71379 -38.22898 -37.76358 -35.87337 -34.65706 -33.87114 -33.70937 -31.47511 -31.04101 -29.69427 -28.67859 -27.11377 -26.23575 -24.93803 -23.95270 -22.61071 -21.44793 -20.72404 -20.48388 -19.06267 -18.28801 -17.81451 -17.54856 -16.86205 -16.27523 -15.91408 -15.77927 -15.44849 -15.39836 -15.15097 -14.68686 -14.56470 -14.36148 -14.12127 -14.02088 -13.71936 -13.58444 -13.26550 -12.98052 -12.87526 -12.56348 -12.45791 -12.33114 -12.13340 -11.96184 -11.86090 -11.75389 -11.52188 -11.43380 -11.33684 -11.16519 -10.92982 -10.82471 -10.51362 -10.42010 -10.19164 -10.13083 -9.69217 -9.45801 -9.40600 -8.37552 -7.99061 -7.93289 -6.39291 -3.79991 2.29555 2.51718 3.22390 3.27795 3.32486 3.47815 3.90274 3.93646 4.03802 4.17078 4.23429 4.29955 4.34643 4.38059 4.48539 4.68469 4.73504 4.79293 4.92411 4.99143 5.07919 5.15376 5.16230 5.24896 5.26693 5.29133 5.39545 5.47457 5.55918 5.62311 5.69302 5.70422 5.73139 5.80500 5.91496 5.97156 6.02195 6.13249 6.31315 6.39791 6.55978 7.09082 7.17971 7.24859 7.41193 7.57444 7.90697 8.08097 8.63635 9.20067 9.56426 10.07812 10.78358 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020197 B = 0.001991 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.997119 B =14060.700016 C =14481.628767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.074 3.926 4 H 0.088 0.912 5 O -0.356 6.356 6 C 0.025 3.975 7 C 0.506 3.494 8 O -0.513 6.513 9 N -0.729 5.729 10 C 0.103 3.897 11 C 0.092 3.908 12 O -0.542 6.542 13 C -0.151 4.151 14 C 0.045 3.955 15 N -0.503 5.503 16 C 0.040 3.960 17 C 0.441 3.559 18 O -0.580 6.580 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.079 3.921 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.395 0.605 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.366 0.634 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.051 0.949 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.099 0.901 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.199 6.405 -2.692 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.012 3.988 4 H 0.106 0.894 5 O -0.273 6.273 6 C -0.071 4.071 7 C 0.290 3.710 8 O -0.386 6.386 9 N -0.384 5.384 10 C -0.021 4.021 11 C 0.050 3.950 12 O -0.347 6.347 13 C -0.190 4.190 14 C -0.083 4.083 15 N -0.227 5.227 16 C -0.092 4.092 17 C 0.226 3.774 18 O -0.465 6.465 19 N -0.199 5.199 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.050 4.050 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.229 0.771 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.213 0.787 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.117 0.883 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.401 7.392 -3.984 27.704 hybrid contribution -0.688 -1.303 0.671 1.619 sum -27.088 6.089 -3.313 27.961 Atomic orbital electron populations 1.21802 0.94625 1.02553 1.02079 1.21917 0.97246 0.94392 1.03780 1.22035 0.91688 0.95579 0.89501 0.89392 1.88053 1.54300 1.56452 1.28500 1.22992 0.89488 0.91487 1.03159 1.20690 0.90179 0.77835 0.82268 1.90759 1.65224 1.44503 1.38147 1.45931 1.07908 1.65899 1.18637 1.22019 0.79305 1.02893 0.97866 1.23062 0.97820 0.81846 0.92250 1.86738 1.27588 1.25717 1.94623 1.23401 0.98607 1.01032 0.95937 1.23022 0.87968 1.00911 0.96373 1.63439 1.11547 1.46205 1.01525 1.22109 0.94086 0.94199 0.98779 1.19732 0.85869 0.84201 0.87561 1.90525 1.78653 1.46343 1.30931 1.41852 1.16911 1.31077 1.30073 1.19650 0.93872 1.16892 1.12405 0.87945 1.25263 0.99859 0.95981 0.96854 1.69606 1.37073 1.21034 1.26612 0.85917 0.80957 0.77881 0.79458 1.19893 1.21006 1.19903 1.22684 0.88486 1.02916 0.90876 0.92657 0.91948 0.91880 0.90138 0.90423 0.89104 0.93507 0.93838 0.77103 0.89738 0.90037 0.78736 0.90808 0.89508 0.93246 0.90155 0.89203 0.93120 0.77480 0.91846 0.88254 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.10 37.16 0.34 -0.33 16 2 C -0.14 -0.78 5.61 -26.73 -0.15 -0.93 16 3 C 0.07 0.56 2.66 -27.88 -0.07 0.49 16 4 H 0.09 0.43 7.65 -51.93 -0.40 0.04 16 5 O -0.36 -3.52 9.53 -55.09 -0.52 -4.04 16 6 C 0.03 0.15 10.33 101.05 1.04 1.19 16 7 C 0.51 5.49 7.18 -10.98 -0.08 5.41 16 8 O -0.51 -8.27 16.51 -14.30 -0.24 -8.51 16 9 N -0.73 -6.05 5.03 -60.30 -0.30 -6.36 16 10 C 0.10 1.16 4.75 -4.04 -0.02 1.14 16 11 C 0.09 1.07 0.93 -88.63 -0.08 0.99 16 12 O -0.54 -6.24 13.11 -35.23 -0.46 -6.70 16 13 C -0.15 -1.42 5.73 -24.43 -0.14 -1.56 16 14 C 0.05 0.54 6.71 -2.30 -0.02 0.53 16 15 N -0.50 -8.34 5.07 -232.69 -1.18 -9.52 16 16 C 0.04 0.73 5.30 -4.98 -0.03 0.70 16 17 C 0.44 10.53 6.95 -10.98 -0.08 10.46 16 18 O -0.58 -15.65 14.31 5.54 0.08 -15.57 16 19 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 20 C -0.30 -8.41 9.68 -14.94 -0.14 -8.56 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 24 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.08 1.31 4.56 -2.83 -0.01 1.29 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.31 6.73 -51.93 -0.35 -0.04 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.30 7.78 -51.93 -0.40 -0.11 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.19 6.62 -51.93 -0.34 -0.16 16 36 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.39 1.91 7.00 -40.82 -0.29 1.63 16 38 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.37 2.50 8.06 45.56 0.37 2.87 16 41 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 42 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 43 H 0.05 0.58 7.72 -51.93 -0.40 0.18 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.05 0.88 8.00 -51.93 -0.42 0.46 16 47 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 48 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.10 1.77 7.68 -51.93 -0.40 1.37 16 50 H 0.08 1.50 6.64 -51.94 -0.34 1.16 16 LS Contribution 404.31 15.07 6.09 6.09 Total: -1.00 -36.32 404.31 -7.87 -44.19 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.44 Total: 11.34 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 0.47 Total: 11.31 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.82 Total: -54.43 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.14 Total: -34.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.32 -7.87 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724385715.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.194 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds