Wall clock time and date at job start Wed Apr 1 2020 01:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47092 * 2 1 4 4 H 1.08995 * 109.46654 * 55.31777 * 3 2 1 5 5 O 1.42895 * 109.46900 * 295.31671 * 3 2 1 6 6 C 1.42907 * 114.00095 * 106.64862 * 5 3 2 7 7 C 1.50700 * 109.47173 * 175.31746 * 3 2 1 8 8 O 1.21279 * 119.99980 * 114.99902 * 7 3 2 9 9 N 1.34786 * 119.99787 * 294.99967 * 7 3 2 10 10 C 1.46496 * 119.99550 * 180.02562 * 9 7 3 11 11 C 1.53001 * 109.46574 * 180.02562 * 10 9 7 12 12 O 1.42899 * 110.63372 * 61.89489 * 11 10 9 13 13 C 1.55438 * 110.69290 * 298.62085 * 11 10 9 14 14 C 1.54910 * 101.52031 * 205.97856 * 13 11 10 15 15 N 1.47845 * 104.89418 * 37.06404 * 14 13 11 16 16 C 1.46893 * 110.99991 * 213.57882 * 15 14 13 17 17 C 1.50701 * 109.47258 * 176.38736 * 16 15 14 18 18 O 1.21296 * 119.99823 * 5.82904 * 17 16 15 19 19 N 1.34781 * 120.00158 * 185.83139 * 17 16 15 20 20 C 1.37093 * 119.99955 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00334 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99964 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00157 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00283 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47093 * 59.99814 * 24 22 20 26 26 H 1.48497 * 109.47384 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47305 * 300.00184 * 24 22 20 28 28 C 1.47440 * 108.56890 * 335.84745 * 15 14 13 29 29 H 1.08999 * 109.46990 * 299.96696 * 1 2 3 30 30 H 1.08996 * 109.47244 * 59.97164 * 1 2 3 31 31 H 1.08998 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47151 * 240.00108 * 2 1 3 33 33 H 1.09003 * 109.47456 * 119.99867 * 2 1 3 34 34 H 1.09001 * 109.47127 * 185.51061 * 6 5 3 35 35 H 1.08997 * 109.46504 * 305.51167 * 6 5 3 36 36 H 1.08993 * 109.47133 * 65.50826 * 6 5 3 37 37 H 0.97000 * 119.99779 * 0.02562 * 9 7 3 38 38 H 1.08996 * 109.47372 * 59.99969 * 10 9 7 39 39 H 1.09002 * 109.47164 * 299.99538 * 10 9 7 40 40 H 0.96695 * 113.99856 * 303.10256 * 12 11 10 41 41 H 1.08998 * 111.10252 * 87.90763 * 13 11 10 42 42 H 1.09004 * 110.99816 * 323.99829 * 13 11 10 43 43 H 1.08995 * 110.37155 * 278.17698 * 14 13 11 44 44 H 1.09004 * 110.37053 * 155.95177 * 14 13 11 45 45 H 1.09000 * 109.47434 * 296.38572 * 16 15 14 46 46 H 1.09000 * 109.47022 * 56.38541 * 16 15 14 47 47 H 0.97001 * 119.99781 * 0.02562 * 19 17 16 48 48 H 0.96995 * 120.00003 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.88770 * 120.39112 * 28 15 14 50 50 H 1.08989 * 109.89207 * 241.41841 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6097 1.9799 0.8451 5 8 1.6556 2.0836 -1.2179 6 6 0.6010 3.0360 -1.0657 7 6 3.5425 1.4442 0.1160 8 8 4.2208 1.8626 -0.7982 9 7 4.1325 0.9805 1.2357 10 6 5.5931 0.9826 1.3486 11 6 6.0002 0.4086 2.7072 12 8 5.5651 -0.9467 2.8320 13 6 5.4345 1.2799 3.8634 14 6 6.4498 0.9876 4.9963 15 7 7.7582 0.8822 4.3162 16 6 8.6210 -0.1013 4.9840 17 6 9.9079 -0.2460 4.2134 18 8 10.1341 0.4804 3.2687 19 7 10.8077 -1.1826 4.5738 20 6 11.9782 -1.3145 3.8724 21 1 12.1796 -0.6677 3.0313 22 6 12.9055 -2.2804 4.2437 23 7 12.6603 -3.0678 5.2668 24 14 14.5007 -2.4597 3.2884 25 1 15.2628 -1.1868 3.3541 26 1 15.3123 -3.5530 3.8810 27 1 14.1956 -2.7814 1.8711 28 6 7.5269 0.5122 2.9078 29 1 -0.3633 0.5133 0.8903 30 1 -0.3633 0.5143 -0.8897 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.3012 3.4059 -2.0462 35 1 -0.2512 2.5599 -0.5808 36 1 0.9487 3.8684 -0.4540 37 1 3.5899 0.6455 1.9666 38 1 5.9629 2.0041 1.2597 39 1 6.0198 0.3711 0.5536 40 1 4.6128 -1.0665 2.7145 41 1 4.4322 0.9565 4.1442 42 1 5.4416 2.3366 3.5958 43 1 6.2038 0.0493 5.4934 44 1 6.4610 1.8060 5.7162 45 1 8.8401 0.2360 5.9971 46 1 8.1112 -1.0640 5.0239 47 1 10.6266 -1.7638 5.3290 48 1 13.3074 -3.7423 5.5257 49 1 7.9360 1.2797 2.2507 50 1 7.9973 -0.4475 2.6945 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724385715.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:32 Heat of formation + Delta-G solvation = -189.670583 kcal Electronic energy + Delta-G solvation = -30770.158199 eV Core-core repulsion = 26410.400723 eV Total energy + Delta-G solvation = -4359.757476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54230 -40.81609 -39.73427 -38.65959 -37.07905 -35.89605 -35.53608 -34.24189 -33.33153 -32.38097 -30.63956 -29.37727 -28.41341 -27.17129 -26.19617 -25.31597 -23.15090 -22.45056 -21.75200 -21.44456 -20.87111 -19.85737 -19.06561 -18.27832 -17.88869 -17.41847 -17.01442 -16.79211 -16.60878 -16.52181 -16.26763 -15.98916 -15.75853 -15.59908 -15.26545 -15.00487 -14.87058 -14.55690 -14.21985 -14.15201 -13.80700 -13.64415 -13.56382 -13.44904 -13.24749 -13.05073 -12.97373 -12.80925 -12.57101 -12.45586 -12.42391 -12.28573 -12.21180 -12.13036 -11.94653 -11.74751 -11.48847 -11.20522 -11.02498 -10.41706 -10.30321 -10.29160 -10.02128 -9.29340 -8.47800 -5.96529 1.38197 1.39830 1.47304 1.50953 1.77002 2.03236 2.27622 2.79939 2.93372 3.02597 3.18577 3.24947 3.42990 3.55458 3.59704 3.78172 3.83247 3.92050 4.21050 4.26117 4.33155 4.37504 4.40745 4.42024 4.50597 4.53712 4.56858 4.58844 4.67387 4.72088 4.81766 4.86107 4.87683 4.98223 5.05932 5.07893 5.12334 5.17658 5.21573 5.39257 5.39692 5.82499 5.96847 6.03929 6.10711 6.43945 6.58712 6.73372 7.11062 7.13829 7.53982 8.09658 8.69452 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020197 B = 0.001991 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.997119 B =14060.700016 C =14481.628767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.078 3.922 4 H 0.125 0.875 5 O -0.393 6.393 6 C 0.019 3.981 7 C 0.501 3.499 8 O -0.576 6.576 9 N -0.705 5.705 10 C 0.112 3.888 11 C 0.111 3.889 12 O -0.557 6.557 13 C -0.137 4.137 14 C 0.040 3.960 15 N -0.522 5.522 16 C 0.055 3.945 17 C 0.437 3.563 18 O -0.617 6.617 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.268 1.268 27 H -0.274 1.274 28 C 0.077 3.923 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.417 0.583 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.390 0.610 41 H 0.120 0.880 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.064 0.936 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.072 0.928 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.114 6.222 -0.680 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.016 3.984 4 H 0.143 0.857 5 O -0.311 6.311 6 C -0.076 4.076 7 C 0.288 3.712 8 O -0.454 6.454 9 N -0.361 5.361 10 C -0.013 4.013 11 C 0.069 3.931 12 O -0.365 6.365 13 C -0.175 4.175 14 C -0.086 4.086 15 N -0.246 5.246 16 C -0.077 4.077 17 C 0.224 3.776 18 O -0.503 6.503 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.193 1.193 27 H -0.199 1.199 28 C -0.051 4.051 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.256 0.744 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.240 0.760 41 H 0.138 0.862 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.131 0.869 46 H 0.082 0.918 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -29.388 7.184 -1.907 30.313 hybrid contribution 0.179 -1.230 0.034 1.244 sum -29.209 5.954 -1.873 29.868 Atomic orbital electron populations 1.21790 0.93216 1.03110 1.02642 1.21945 0.98388 0.92954 1.03779 1.22194 0.88899 0.97099 0.90163 0.85747 1.88015 1.55584 1.57399 1.30110 1.23175 0.89389 0.91235 1.03837 1.21497 0.91705 0.76416 0.81577 1.90734 1.66827 1.47443 1.40416 1.45647 1.06620 1.64927 1.18875 1.21693 0.81049 1.01543 0.96986 1.22617 0.94577 0.82715 0.93230 1.86690 1.29920 1.25273 1.94643 1.23414 1.00030 1.00814 0.93208 1.23215 0.86053 1.02139 0.97236 1.63409 1.14157 1.45507 1.01551 1.21959 0.91397 0.95647 0.98676 1.20796 0.87093 0.82606 0.87064 1.90497 1.79785 1.47437 1.32629 1.41920 1.16923 1.31894 1.30272 1.19609 0.95803 1.17920 1.12994 0.90435 1.26044 1.02536 0.95107 0.97614 1.69665 1.38109 1.21085 1.27155 0.84995 0.77103 0.78194 0.78071 1.19677 1.19278 1.19889 1.22454 0.92088 0.99613 0.90992 0.90569 0.92894 0.91368 0.92689 0.87937 0.88921 0.91089 0.93397 0.74441 0.90990 0.92891 0.75994 0.86152 0.88986 0.92202 0.88440 0.86925 0.91850 0.77042 0.91258 0.90973 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.10 71.98 0.65 -0.20 16 2 C -0.13 -1.21 5.61 30.60 0.17 -1.04 16 3 C 0.08 1.02 2.66 29.85 0.08 1.10 16 4 H 0.13 0.70 7.65 -2.39 -0.02 0.68 16 5 O -0.39 -7.46 9.53 -129.99 -1.24 -8.69 16 6 C 0.02 0.20 10.33 113.37 1.17 1.37 16 7 C 0.50 10.50 7.18 87.66 0.63 11.13 16 8 O -0.58 -19.36 16.51 15.96 0.26 -19.10 16 9 N -0.70 -10.38 5.03 -463.06 -2.33 -12.71 16 10 C 0.11 2.54 4.75 86.38 0.41 2.95 16 11 C 0.11 2.45 0.93 -9.51 -0.01 2.44 16 12 O -0.56 -11.63 13.11 -148.98 -1.95 -13.58 16 13 C -0.14 -2.06 5.73 32.09 0.18 -1.87 16 14 C 0.04 0.84 6.71 86.77 0.58 1.42 16 15 N -0.52 -17.01 5.07 -890.11 -4.52 -21.52 16 16 C 0.05 1.98 5.30 85.56 0.45 2.43 16 17 C 0.44 21.64 6.95 87.66 0.61 22.25 16 18 O -0.62 -35.14 14.31 -3.08 -0.04 -35.19 16 19 N -0.57 -30.42 5.29 -306.98 -1.62 -32.04 16 20 C -0.33 -19.50 9.68 84.04 0.81 -18.69 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 23 N -0.92 -50.54 13.05 21.66 0.28 -50.26 16 24 Si 0.99 44.08 29.55 68.60 2.03 46.11 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 C 0.08 2.67 4.56 86.65 0.39 3.06 16 29 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.05 0.41 6.73 -2.39 -0.02 0.40 16 31 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.39 7.78 -2.39 -0.02 0.37 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.36 6.62 -2.39 -0.02 0.34 16 36 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.42 2.30 7.00 -92.71 -0.65 1.65 16 38 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.39 3.82 8.06 -74.06 -0.60 3.22 16 41 H 0.12 0.77 8.04 -2.39 -0.02 0.75 16 42 H 0.09 1.37 8.05 -2.38 -0.02 1.35 16 43 H 0.06 1.17 7.72 -2.39 -0.02 1.15 16 44 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.11 3.56 8.14 -2.39 -0.02 3.55 16 46 H 0.06 2.14 8.00 -2.39 -0.02 2.12 16 47 H 0.40 19.96 7.90 -92.71 -0.73 19.22 16 48 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 49 H 0.07 2.80 7.68 -2.38 -0.02 2.78 16 50 H 0.03 1.37 6.64 -2.39 -0.02 1.35 16 Total: -1.00 -85.59 404.31 -3.52 -89.12 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -1.00 Total: 31.78 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: 6.61 Total: 26.09 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -8.18 Total: -116.53 kcal Atomic # 8 Polarization: -73.59 SS G_CDS: -2.97 Total: -76.57 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -85.59 -3.52 -89.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724385715.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.556 kcal (2) G-P(sol) polarization free energy of solvation -85.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds