Wall clock time and date at job start Wed Apr 1 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00374 * 2 1 4 4 C 1.52999 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.46773 * 305.00179 * 4 3 2 6 6 C 1.53001 * 109.46768 * 64.99678 * 4 3 2 7 7 C 1.50698 * 109.47004 * 184.99493 * 4 3 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 4 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 O 1.42901 * 110.27117 * 62.91015 * 11 10 9 13 13 C 1.54587 * 110.30821 * 300.71554 * 11 10 9 14 14 C 1.54937 * 102.92395 * 219.12561 * 13 11 10 15 15 N 1.48530 * 103.22657 * 37.41488 * 14 13 11 16 16 C 1.46897 * 110.99928 * 200.28033 * 15 14 13 17 17 C 1.50696 * 109.47013 * 307.39312 * 16 15 14 18 18 O 1.21291 * 120.00276 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99668 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99758 * 180.02562 * 19 17 16 21 21 H 1.07994 * 119.99996 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00004 * 180.02562 * 20 19 17 23 23 N 1.31423 * 119.99958 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00333 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46746 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47159 * 119.99856 * 24 22 20 27 27 H 1.48496 * 109.46938 * 239.99942 * 24 22 20 28 28 C 1.47905 * 105.81899 * 320.79212 * 15 14 13 29 29 H 1.08999 * 109.47252 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47222 * 300.00941 * 1 2 3 31 31 H 1.09001 * 109.46653 * 60.00283 * 1 2 3 32 32 H 1.09000 * 109.47157 * 59.98957 * 3 2 1 33 33 H 1.09003 * 109.46451 * 299.99749 * 3 2 1 34 34 H 1.09001 * 109.47406 * 60.00127 * 6 4 3 35 35 H 1.09001 * 109.47038 * 180.02562 * 6 4 3 36 36 H 1.08995 * 109.47475 * 299.99715 * 6 4 3 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 4 38 38 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 39 39 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 40 40 H 0.96700 * 114.00141 * 300.70086 * 12 11 10 41 41 H 1.09006 * 110.72476 * 337.48701 * 13 11 10 42 42 H 1.09008 * 110.72684 * 100.76408 * 13 11 10 43 43 H 1.08998 * 110.66392 * 278.97649 * 14 13 11 44 44 H 1.09005 * 110.80873 * 155.91643 * 14 13 11 45 45 H 1.08998 * 109.47443 * 67.39861 * 16 15 14 46 46 H 1.09002 * 109.46865 * 187.39651 * 16 15 14 47 47 H 0.97004 * 120.00473 * 0.02562 * 19 17 16 48 48 H 0.96994 * 119.99897 * 180.02562 * 23 22 20 49 49 H 1.08990 * 109.91990 * 265.97688 * 28 15 14 50 50 H 1.09008 * 109.91768 * 144.67986 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 6 3.9963 0.5362 -1.3064 7 6 4.1480 2.5559 0.1244 8 8 3.4349 3.5336 0.2046 9 7 5.4883 2.6957 0.1468 10 6 6.0838 4.0293 0.2611 11 6 7.6091 3.9089 0.2567 12 8 8.0591 3.3634 -0.9851 13 6 8.0810 3.0268 1.4352 14 6 9.3624 3.7512 1.9189 15 7 9.0198 5.1880 1.7630 16 6 10.2324 6.0154 1.7087 17 6 11.1053 5.7059 2.8975 18 8 10.7523 4.8772 3.7098 19 7 12.2788 6.3492 3.0575 20 6 13.0732 6.0673 4.1387 21 1 12.7585 5.3300 4.8623 22 6 14.2827 6.7308 4.3040 23 7 14.6655 7.6284 3.4236 24 14 15.3649 6.3472 5.7775 25 1 14.7123 5.3079 6.6137 26 1 16.6828 5.8497 5.3077 27 1 15.5595 7.5796 6.5829 28 6 8.2547 5.2855 0.5010 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8462 -0.8901 34 1 3.6810 1.1523 -2.1485 35 1 5.0828 0.4497 -1.3058 36 1 3.5533 -0.4556 -1.3959 37 1 6.0587 1.9137 0.0830 38 1 5.7654 4.6429 -0.5818 39 1 5.7587 4.4939 1.1919 40 1 7.7017 2.4868 -1.1822 41 1 7.3297 3.0035 2.2246 42 1 8.3139 2.0183 1.0931 43 1 10.2133 3.4882 1.2906 44 1 9.5694 3.5161 2.9629 45 1 10.7788 5.7996 0.7906 46 1 9.9542 7.0692 1.7268 47 1 12.5613 7.0117 2.4077 48 1 15.5100 8.0913 3.5388 49 1 8.9255 5.5323 -0.3218 50 1 7.4806 6.0474 0.5939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724388155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:56 Heat of formation + Delta-G solvation = -159.957338 kcal Electronic energy + Delta-G solvation = -30245.229711 eV Core-core repulsion = 25886.760697 eV Total energy + Delta-G solvation = -4358.469013 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65393 -39.64914 -38.30553 -37.99019 -35.93020 -34.67512 -34.04493 -33.90214 -31.51976 -31.02060 -29.36702 -27.85886 -27.22818 -26.20137 -25.34801 -24.02272 -22.99878 -21.52096 -20.58521 -20.14021 -19.28949 -18.11092 -17.89529 -17.20732 -16.50080 -16.37729 -16.17453 -16.00642 -15.55315 -15.44452 -15.21434 -14.98350 -14.54653 -14.35614 -14.23582 -13.96754 -13.74845 -13.46855 -13.31417 -13.06346 -13.00305 -12.67112 -12.62831 -12.31284 -11.99204 -11.89073 -11.80846 -11.67672 -11.56441 -11.34947 -11.22665 -11.18191 -11.00493 -10.87025 -10.36764 -10.25475 -10.15827 -10.10363 -10.05907 -9.52133 -9.45802 -8.42614 -8.05857 -7.94152 -6.44375 -3.85379 2.26446 2.57558 3.14513 3.25463 3.32295 3.47037 3.72337 3.86472 4.12898 4.16756 4.26306 4.35397 4.41930 4.48832 4.56573 4.67305 4.83747 4.91712 4.94434 5.04665 5.17043 5.20804 5.22544 5.24489 5.25195 5.33323 5.38116 5.46131 5.52456 5.56031 5.66582 5.70414 5.72634 5.76545 5.90583 5.93656 6.02886 6.19827 6.23884 6.58855 6.67950 7.02724 7.10330 7.21196 7.35531 7.53045 7.81257 8.03217 8.58312 9.15055 9.50716 10.01940 10.73268 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.001695 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.094821 B =16514.435727 C =16832.881710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.080 3.920 4 C -0.111 4.111 5 H 0.108 0.892 6 C -0.141 4.141 7 C 0.523 3.477 8 O -0.538 6.538 9 N -0.726 5.726 10 C 0.102 3.898 11 C 0.111 3.889 12 O -0.550 6.550 13 C -0.153 4.153 14 C 0.042 3.958 15 N -0.492 5.492 16 C 0.035 3.965 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.561 5.561 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.048 3.952 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.371 0.629 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.121 0.879 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.393 0.607 48 H 0.271 0.729 49 H 0.062 0.938 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.792 -13.013 -11.915 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.003 3.997 4 C -0.132 4.132 5 H 0.126 0.874 6 C -0.198 4.198 7 C 0.309 3.691 8 O -0.414 6.414 9 N -0.378 5.378 10 C -0.022 4.022 11 C 0.070 3.930 12 O -0.355 6.355 13 C -0.191 4.191 14 C -0.085 4.085 15 N -0.217 5.217 16 C -0.096 4.096 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.197 5.197 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.081 4.081 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.233 0.767 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.218 0.782 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.139 0.861 45 H 0.069 0.931 46 H 0.110 0.890 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.215 -12.111 -10.891 27.547 hybrid contribution 1.124 -0.507 -0.449 1.312 sum -21.092 -12.618 -11.340 27.068 Atomic orbital electron populations 1.22741 0.80553 1.02784 1.00250 1.87794 1.20027 1.27807 1.95559 1.22217 0.91396 0.84317 1.01816 1.21184 0.95511 0.94493 1.01997 0.87400 1.21738 1.01224 1.01866 0.94986 1.20367 0.82162 0.90844 0.75734 1.90734 1.60861 1.40746 1.49070 1.45902 1.06735 1.09833 1.75372 1.22125 0.92240 0.84169 1.03680 1.22336 0.91062 0.95341 0.84294 1.86653 1.73193 1.36964 1.38667 1.23308 0.99785 0.98343 0.97674 1.23438 0.94141 0.86411 1.04547 1.64727 1.19249 1.07672 1.30006 1.22123 0.90780 0.99104 0.97607 1.19671 0.83287 0.85771 0.88487 1.90429 1.73425 1.36611 1.46212 1.41855 1.16804 1.36680 1.24330 1.19756 0.99271 1.21687 1.02207 0.87800 1.25277 0.97767 0.96041 0.98818 1.69624 1.23172 1.25689 1.35648 0.85793 0.79386 0.78383 0.80736 1.19215 1.20767 1.20720 1.22837 0.98676 0.94039 0.92543 0.89488 0.93898 0.93961 0.92190 0.92433 0.92085 0.92076 0.90447 0.76691 0.90458 0.89592 0.78225 0.89787 0.90801 0.94211 0.86117 0.93073 0.89025 0.77410 0.91876 0.91963 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.23 10.24 -35.23 -0.36 -3.59 16 3 C 0.08 0.65 4.67 37.16 0.17 0.83 16 4 C -0.11 -0.79 2.96 -91.77 -0.27 -1.06 16 5 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 6 C -0.14 -0.76 8.99 37.16 0.33 -0.43 16 7 C 0.52 4.96 7.15 -10.99 -0.08 4.88 16 8 O -0.54 -7.23 15.92 5.55 0.09 -7.14 16 9 N -0.73 -5.63 5.01 -60.29 -0.30 -5.93 16 10 C 0.10 0.99 4.50 -4.04 -0.02 0.98 16 11 C 0.11 1.18 1.05 -89.26 -0.09 1.09 16 12 O -0.55 -5.57 12.95 -35.23 -0.46 -6.03 16 13 C -0.15 -1.74 5.64 -24.87 -0.14 -1.88 16 14 C 0.04 0.68 5.31 -1.90 -0.01 0.67 16 15 N -0.49 -8.10 5.26 -231.89 -1.22 -9.32 16 16 C 0.04 0.64 5.52 -4.98 -0.03 0.61 16 17 C 0.44 10.28 7.49 -10.99 -0.08 10.20 16 18 O -0.58 -15.11 13.09 5.55 0.07 -15.04 16 19 N -0.56 -14.08 5.29 -10.97 -0.06 -14.14 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 23 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 24 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.05 0.62 6.18 -2.75 -0.02 0.60 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.54 7.95 -51.93 -0.41 0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.23 7.57 -51.93 -0.39 -0.17 16 36 H 0.08 0.43 7.82 -51.93 -0.41 0.02 16 37 H 0.40 2.06 6.75 -40.82 -0.28 1.78 16 38 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.37 2.27 8.13 45.56 0.37 2.64 16 41 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 42 H 0.07 0.68 8.08 -51.92 -0.42 0.26 16 43 H 0.04 0.68 8.02 -51.93 -0.42 0.26 16 44 H 0.12 2.36 5.96 -51.93 -0.31 2.05 16 45 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 46 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.06 0.83 7.39 -51.93 -0.38 0.45 16 50 H 0.09 1.07 7.68 -51.92 -0.40 0.67 16 LS Contribution 404.99 15.07 6.10 6.10 Total: -1.00 -33.72 404.99 -7.29 -41.01 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -7.50 Total: 11.97 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 0.64 Total: 9.88 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.86 Total: -53.00 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.66 Total: -31.80 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.72 -7.29 -41.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724388155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.951 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds