Wall clock time and date at job start Wed Apr 1 2020 02:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00374 * 2 1 4 4 C 1.52999 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.46773 * 305.00179 * 4 3 2 6 6 C 1.53001 * 109.46768 * 64.99678 * 4 3 2 7 7 C 1.50698 * 109.47004 * 184.99493 * 4 3 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 4 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 O 1.42901 * 110.27117 * 62.91015 * 11 10 9 13 13 C 1.54587 * 110.30821 * 300.71554 * 11 10 9 14 14 C 1.54937 * 102.92395 * 219.12561 * 13 11 10 15 15 N 1.48530 * 103.22657 * 37.41488 * 14 13 11 16 16 C 1.46897 * 110.99928 * 200.28033 * 15 14 13 17 17 C 1.50696 * 109.47013 * 307.39312 * 16 15 14 18 18 O 1.21291 * 120.00276 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99668 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99758 * 180.02562 * 19 17 16 21 21 H 1.07994 * 119.99996 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00004 * 180.02562 * 20 19 17 23 23 N 1.31423 * 119.99958 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00333 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46746 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47159 * 119.99856 * 24 22 20 27 27 H 1.48496 * 109.46938 * 239.99942 * 24 22 20 28 28 C 1.47905 * 105.81899 * 320.79212 * 15 14 13 29 29 H 1.08999 * 109.47252 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47222 * 300.00941 * 1 2 3 31 31 H 1.09001 * 109.46653 * 60.00283 * 1 2 3 32 32 H 1.09000 * 109.47157 * 59.98957 * 3 2 1 33 33 H 1.09003 * 109.46451 * 299.99749 * 3 2 1 34 34 H 1.09001 * 109.47406 * 60.00127 * 6 4 3 35 35 H 1.09001 * 109.47038 * 180.02562 * 6 4 3 36 36 H 1.08995 * 109.47475 * 299.99715 * 6 4 3 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 4 38 38 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 39 39 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 40 40 H 0.96700 * 114.00141 * 300.70086 * 12 11 10 41 41 H 1.09006 * 110.72476 * 337.48701 * 13 11 10 42 42 H 1.09008 * 110.72684 * 100.76408 * 13 11 10 43 43 H 1.08998 * 110.66392 * 278.97649 * 14 13 11 44 44 H 1.09005 * 110.80873 * 155.91643 * 14 13 11 45 45 H 1.08998 * 109.47443 * 67.39861 * 16 15 14 46 46 H 1.09002 * 109.46865 * 187.39651 * 16 15 14 47 47 H 0.97004 * 120.00473 * 0.02562 * 19 17 16 48 48 H 0.96994 * 119.99897 * 180.02562 * 23 22 20 49 49 H 1.08990 * 109.91990 * 265.97688 * 28 15 14 50 50 H 1.09008 * 109.91768 * 144.67986 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 6 3.9963 0.5362 -1.3064 7 6 4.1480 2.5559 0.1244 8 8 3.4349 3.5336 0.2046 9 7 5.4883 2.6957 0.1468 10 6 6.0838 4.0293 0.2611 11 6 7.6091 3.9089 0.2567 12 8 8.0591 3.3634 -0.9851 13 6 8.0810 3.0268 1.4352 14 6 9.3624 3.7512 1.9189 15 7 9.0198 5.1880 1.7630 16 6 10.2324 6.0154 1.7087 17 6 11.1053 5.7059 2.8975 18 8 10.7523 4.8772 3.7098 19 7 12.2788 6.3492 3.0575 20 6 13.0732 6.0673 4.1387 21 1 12.7585 5.3300 4.8623 22 6 14.2827 6.7308 4.3040 23 7 14.6655 7.6284 3.4236 24 14 15.3649 6.3472 5.7775 25 1 14.7123 5.3079 6.6137 26 1 16.6828 5.8497 5.3077 27 1 15.5595 7.5796 6.5829 28 6 8.2547 5.2855 0.5010 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8462 -0.8901 34 1 3.6810 1.1523 -2.1485 35 1 5.0828 0.4497 -1.3058 36 1 3.5533 -0.4556 -1.3959 37 1 6.0587 1.9137 0.0830 38 1 5.7654 4.6429 -0.5818 39 1 5.7587 4.4939 1.1919 40 1 7.7017 2.4868 -1.1822 41 1 7.3297 3.0035 2.2246 42 1 8.3139 2.0183 1.0931 43 1 10.2133 3.4882 1.2906 44 1 9.5694 3.5161 2.9629 45 1 10.7788 5.7996 0.7906 46 1 9.9542 7.0692 1.7268 47 1 12.5613 7.0117 2.4077 48 1 15.5100 8.0913 3.5388 49 1 8.9255 5.5323 -0.3218 50 1 7.4806 6.0474 0.5939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724388155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:55 Heat of formation + Delta-G solvation = -189.901955 kcal Electronic energy + Delta-G solvation = -30246.528207 eV Core-core repulsion = 25886.760697 eV Total energy + Delta-G solvation = -4359.767509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51615 -40.75879 -39.73483 -38.75399 -37.12541 -35.87008 -35.45751 -34.62251 -33.35898 -32.33759 -30.38408 -28.73928 -28.21747 -26.89937 -26.56215 -25.49583 -23.72937 -22.71410 -21.45288 -21.09068 -20.94555 -19.89113 -18.76951 -18.13814 -17.58420 -17.24275 -17.08220 -16.97973 -16.76053 -16.32140 -16.26072 -16.12027 -15.90578 -15.72130 -15.51398 -14.98359 -14.80161 -14.60311 -14.41866 -14.14616 -13.76089 -13.72887 -13.46716 -13.41790 -13.17989 -13.15054 -13.00179 -12.71552 -12.44316 -12.42689 -12.36491 -12.32315 -12.28260 -12.10647 -11.92106 -11.82828 -11.50315 -11.04647 -10.87435 -10.68147 -10.22590 -10.17234 -10.01426 -9.40128 -8.47518 -5.96295 1.36110 1.41766 1.53444 1.55831 1.89241 2.02119 2.27514 2.69653 2.90540 3.18264 3.21349 3.28251 3.43534 3.58220 3.60616 3.76391 3.87475 4.01430 4.22146 4.27761 4.32174 4.32594 4.44033 4.46699 4.49938 4.50604 4.61518 4.63347 4.65652 4.69664 4.72933 4.79887 4.85332 4.90795 4.97103 5.00169 5.06770 5.22488 5.28357 5.32479 5.40987 5.80303 5.89326 6.06493 6.12784 6.39789 6.58984 6.72680 7.11714 7.12721 7.53841 8.09188 8.70128 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.001695 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.094821 B =16514.435727 C =16832.881710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.080 3.920 4 C -0.104 4.104 5 H 0.123 0.877 6 C -0.136 4.136 7 C 0.523 3.477 8 O -0.581 6.581 9 N -0.711 5.711 10 C 0.112 3.888 11 C 0.129 3.871 12 O -0.557 6.557 13 C -0.140 4.140 14 C 0.039 3.961 15 N -0.507 5.507 16 C 0.047 3.953 17 C 0.440 3.560 18 O -0.612 6.612 19 N -0.572 5.572 20 C -0.332 4.332 21 H 0.081 0.919 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.043 3.957 29 H 0.103 0.897 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.391 0.609 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.026 0.974 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.063 0.937 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.147 -14.174 -13.032 29.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.003 3.997 4 C -0.125 4.125 5 H 0.140 0.860 6 C -0.194 4.194 7 C 0.311 3.689 8 O -0.461 6.461 9 N -0.364 5.364 10 C -0.013 4.013 11 C 0.087 3.913 12 O -0.366 6.366 13 C -0.178 4.178 14 C -0.088 4.088 15 N -0.232 5.232 16 C -0.085 4.085 17 C 0.227 3.773 18 O -0.499 6.499 19 N -0.209 5.209 20 C -0.462 4.462 21 H 0.099 0.901 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.085 4.085 29 H 0.121 0.879 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.252 0.748 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.241 0.759 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.045 0.955 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.128 0.872 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.565 -13.304 -12.041 28.830 hybrid contribution 1.165 -0.180 -0.130 1.186 sum -21.399 -13.484 -12.171 28.069 Atomic orbital electron populations 1.22930 0.79421 1.04015 1.00668 1.87769 1.21362 1.27600 1.95586 1.22166 0.92351 0.84314 1.00870 1.21170 0.94569 0.93181 1.03618 0.85960 1.21738 1.02687 1.01446 0.93520 1.20776 0.82262 0.91201 0.74701 1.90720 1.61914 1.42314 1.51169 1.45732 1.06479 1.09768 1.74457 1.21886 0.91453 0.85028 1.02893 1.21986 0.91116 0.93867 0.84325 1.86625 1.73506 1.38549 1.37883 1.23249 0.97156 0.99448 0.97959 1.23265 0.96251 0.87226 1.02091 1.64695 1.18497 1.07524 1.32497 1.22008 0.90750 1.00468 0.95262 1.20632 0.82950 0.84336 0.89352 1.90429 1.74015 1.37611 1.47804 1.41925 1.17483 1.37349 1.24132 1.19715 1.00759 1.22501 1.03215 0.90123 1.26051 0.98365 0.95516 1.01318 1.69685 1.23715 1.25957 1.36780 0.84856 0.77673 0.78262 0.77450 1.19715 1.19615 1.19702 1.22923 0.98626 0.96104 0.90804 0.87884 0.93702 0.93372 0.93569 0.93076 0.92707 0.89802 0.90292 0.74804 0.90729 0.90979 0.75902 0.89657 0.87838 0.95531 0.90013 0.91548 0.87164 0.77064 0.91308 0.91899 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.51 16 2 O -0.40 -6.18 10.24 -148.98 -1.53 -7.71 16 3 C 0.08 1.26 4.67 71.98 0.34 1.60 16 4 C -0.10 -1.29 2.96 -11.54 -0.03 -1.33 16 5 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 6 C -0.14 -1.13 8.99 71.98 0.65 -0.48 16 7 C 0.52 9.11 7.15 87.66 0.63 9.74 16 8 O -0.58 -15.40 15.92 -3.04 -0.05 -15.45 16 9 N -0.71 -9.25 5.01 -463.05 -2.32 -11.57 16 10 C 0.11 1.96 4.50 86.38 0.39 2.35 16 11 C 0.13 2.43 1.05 -9.92 -0.01 2.42 16 12 O -0.56 -9.47 12.95 -148.98 -1.93 -11.40 16 13 C -0.14 -2.91 5.64 31.80 0.18 -2.73 16 14 C 0.04 1.27 5.31 86.65 0.46 1.73 16 15 N -0.51 -16.41 5.26 -887.58 -4.67 -21.08 16 16 C 0.05 1.65 5.52 85.56 0.47 2.12 16 17 C 0.44 20.92 7.49 87.66 0.66 21.58 16 18 O -0.61 -32.99 13.09 -3.07 -0.04 -33.03 16 19 N -0.57 -29.43 5.29 -306.99 -1.62 -31.05 16 20 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 23 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 24 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 C 0.04 1.06 6.18 86.45 0.53 1.59 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.84 7.95 -2.39 -0.02 0.82 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.30 7.57 -2.39 -0.02 0.29 16 36 H 0.08 0.68 7.82 -2.39 -0.02 0.66 16 37 H 0.41 2.75 6.75 -92.71 -0.63 2.13 16 38 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.39 3.15 8.13 -74.06 -0.60 2.55 16 41 H 0.08 1.79 7.86 -2.38 -0.02 1.78 16 42 H 0.10 1.54 8.08 -2.38 -0.02 1.53 16 43 H 0.03 0.91 8.02 -2.39 -0.02 0.89 16 44 H 0.08 3.31 5.96 -2.38 -0.01 3.30 16 45 H 0.07 2.16 7.81 -2.39 -0.02 2.15 16 46 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 47 H 0.40 19.46 7.90 -92.71 -0.73 18.72 16 48 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 49 H 0.06 1.55 7.39 -2.39 -0.02 1.53 16 50 H 0.10 2.25 7.68 -2.38 -0.02 2.23 16 Total: -1.00 -75.03 404.99 -4.05 -79.08 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -0.99 Total: 34.90 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 6.78 Total: 21.88 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -8.33 Total: -113.13 kcal Atomic # 8 Polarization: -64.04 SS G_CDS: -3.54 Total: -67.58 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -75.03 -4.05 -79.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724388155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.821 kcal (2) G-P(sol) polarization free energy of solvation -75.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds