Wall clock time and date at job start Wed Apr 1 2020 02:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99513 * 2 1 4 4 C 1.53006 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46955 * 55.00093 * 4 3 2 6 6 C 1.52999 * 109.46626 * 294.99621 * 4 3 2 7 7 C 1.50698 * 109.47184 * 175.00252 * 4 3 2 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 4 3 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 4 3 10 10 C 1.46504 * 119.99735 * 179.97438 * 9 7 4 11 11 C 1.53006 * 109.46883 * 179.97438 * 10 9 7 12 12 O 1.42897 * 110.62458 * 303.10124 * 11 10 9 13 13 C 1.55136 * 110.70711 * 66.39591 * 11 10 9 14 14 C 1.54903 * 101.65331 * 154.03928 * 13 11 10 15 15 N 1.47848 * 104.79467 * 322.92938 * 14 13 11 16 16 C 1.46896 * 110.99967 * 146.36551 * 15 14 13 17 17 C 1.50701 * 109.47351 * 69.15801 * 16 15 14 18 18 O 1.21284 * 119.99627 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99985 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00126 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00091 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00261 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46904 * 89.99664 * 24 22 20 26 26 H 1.48497 * 109.47272 * 209.99873 * 24 22 20 27 27 H 1.48503 * 109.46850 * 330.00145 * 24 22 20 28 28 C 1.47441 * 108.56459 * 24.09584 * 15 14 13 29 29 H 1.09001 * 109.47173 * 300.00021 * 1 2 3 30 30 H 1.09007 * 109.47491 * 59.99931 * 1 2 3 31 31 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47442 * 59.99944 * 3 2 1 33 33 H 1.09007 * 109.47471 * 299.99799 * 3 2 1 34 34 H 1.09000 * 109.47160 * 60.00369 * 6 4 3 35 35 H 1.09002 * 109.46719 * 180.02562 * 6 4 3 36 36 H 1.08993 * 109.47839 * 299.99931 * 6 4 3 37 37 H 0.96998 * 119.99962 * 359.97438 * 9 7 4 38 38 H 1.08998 * 109.47135 * 299.99021 * 10 9 7 39 39 H 1.08993 * 109.47378 * 60.00104 * 10 9 7 40 40 H 0.96707 * 114.00420 * 59.30633 * 12 11 10 41 41 H 1.09005 * 110.99581 * 272.12885 * 13 11 10 42 42 H 1.09004 * 110.99058 * 35.94488 * 13 11 10 43 43 H 1.09003 * 110.37571 * 204.10081 * 14 13 11 44 44 H 1.08996 * 110.47143 * 81.80562 * 14 13 11 45 45 H 1.09001 * 109.47451 * 189.16323 * 16 15 14 46 46 H 1.09008 * 109.47093 * 309.15413 * 16 15 14 47 47 H 0.97000 * 120.00163 * 359.97438 * 19 17 16 48 48 H 0.96997 * 119.99689 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.89298 * 239.59956 * 28 15 14 50 50 H 1.09008 * 109.88892 * 118.41564 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5687 -0.8427 6 6 3.9961 0.5366 1.3065 7 6 4.1478 2.5561 -0.1244 8 8 3.4346 3.5337 -0.2047 9 7 5.4881 2.6960 -0.1469 10 6 6.0834 4.0292 -0.2678 11 6 7.6087 3.9085 -0.2683 12 8 8.0612 3.2410 0.9114 13 6 8.1003 3.1723 -1.5424 14 6 9.5356 3.7346 -1.6945 15 7 9.4311 5.1518 -1.2863 16 6 10.6622 5.6005 -0.6222 17 6 11.7805 5.6687 -1.6301 18 8 11.5725 5.3722 -2.7876 19 7 13.0120 6.0582 -1.2450 20 6 14.0294 6.1197 -2.1618 21 1 13.8440 5.8565 -3.1927 22 6 15.2991 6.5207 -1.7647 23 7 15.5248 6.8405 -0.5102 24 14 16.6853 6.6053 -3.0140 25 1 16.7196 7.9586 -3.6245 26 1 17.9790 6.3347 -2.3371 27 1 16.4592 5.5899 -4.0738 28 6 8.2661 5.2988 -0.3947 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.5532 -0.4553 1.3960 35 1 5.0828 0.4510 1.3062 36 1 3.6808 1.1527 2.1485 37 1 6.0585 1.9141 -0.0831 38 1 5.7549 4.4907 -1.1990 39 1 5.7685 4.6455 0.5742 40 1 7.7062 2.3479 1.0188 41 1 8.1180 2.0934 -1.3877 42 1 7.4859 3.4315 -2.4046 43 1 9.8639 3.6616 -2.7313 44 1 10.2253 3.2012 -1.0404 45 1 10.5024 6.5880 -0.1894 46 1 10.9267 4.8965 0.1669 47 1 13.1784 6.2949 -0.3192 48 1 16.4113 7.1201 -0.2329 49 1 7.5571 6.0065 -0.8245 50 1 8.5912 5.6458 0.5862 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724388156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:59 Heat of formation + Delta-G solvation = -161.729121 kcal Electronic energy + Delta-G solvation = -30158.686110 eV Core-core repulsion = 25800.140266 eV Total energy + Delta-G solvation = -4358.545844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70049 -39.68094 -38.27854 -37.94762 -35.95363 -34.69377 -34.08299 -33.83562 -31.49123 -31.02067 -29.50913 -27.89141 -27.25590 -26.23698 -25.36843 -24.02964 -23.04541 -21.40474 -20.75445 -20.23485 -19.19882 -18.18223 -17.86325 -17.29722 -16.54356 -16.41160 -16.23582 -16.00478 -15.56838 -15.42627 -15.22628 -14.95279 -14.54340 -14.40538 -14.26218 -13.95758 -13.77261 -13.49643 -13.32686 -13.04534 -12.89444 -12.71438 -12.68718 -12.41851 -12.02555 -12.02177 -11.81895 -11.59536 -11.48379 -11.44822 -11.38325 -11.18323 -11.05637 -10.81348 -10.38118 -10.21824 -10.20015 -10.14596 -10.13023 -9.52543 -9.46811 -8.44719 -7.95661 -7.89020 -6.38984 -3.79709 2.20428 2.51116 3.19473 3.27770 3.33425 3.42322 3.75011 3.93901 3.99953 4.12082 4.22773 4.30625 4.36833 4.38367 4.51755 4.66814 4.79505 4.88768 4.90744 5.08907 5.13858 5.15881 5.19523 5.21908 5.26686 5.29616 5.31623 5.41327 5.43702 5.46473 5.58505 5.63462 5.69668 5.82523 5.87201 5.92142 5.94398 6.09578 6.31705 6.40170 6.64399 6.95734 7.17805 7.21927 7.29083 7.57544 7.74977 8.09040 8.65064 9.21030 9.57842 10.09895 10.78881 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.039456 B = 0.001622 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.480370 B =17261.440880 C =17314.966442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.079 3.921 4 C -0.110 4.110 5 H 0.108 0.892 6 C -0.141 4.141 7 C 0.523 3.477 8 O -0.537 6.537 9 N -0.726 5.726 10 C 0.103 3.897 11 C 0.097 3.903 12 O -0.544 6.544 13 C -0.155 4.155 14 C 0.058 3.942 15 N -0.501 5.501 16 C 0.040 3.960 17 C 0.445 3.555 18 O -0.579 6.579 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.057 3.943 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.398 0.602 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.369 0.631 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.094 0.906 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.461 -13.430 6.110 29.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.002 3.998 4 C -0.132 4.132 5 H 0.126 0.874 6 C -0.198 4.198 7 C 0.309 3.691 8 O -0.414 6.414 9 N -0.378 5.378 10 C -0.021 4.021 11 C 0.055 3.945 12 O -0.349 6.349 13 C -0.193 4.193 14 C -0.069 4.069 15 N -0.224 5.224 16 C -0.091 4.091 17 C 0.231 3.769 18 O -0.462 6.462 19 N -0.203 5.203 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.071 4.071 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.232 0.768 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.216 0.784 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.537 -12.115 5.001 28.703 hybrid contribution 0.821 -0.882 0.727 1.407 sum -24.716 -12.996 5.728 28.506 Atomic orbital electron populations 1.22744 0.80525 1.02808 1.00256 1.87795 1.20050 1.27770 1.95559 1.22219 0.91373 0.84347 1.01819 1.21185 0.95537 0.94424 1.02014 0.87425 1.21741 1.01239 1.01901 0.94968 1.20376 0.82117 0.90878 0.75687 1.90736 1.60834 1.40751 1.49038 1.45875 1.06757 1.09795 1.75422 1.22013 0.92167 0.84309 1.03616 1.22813 0.91106 0.95100 0.85461 1.86679 1.73200 1.32153 1.42844 1.23447 0.98545 0.99645 0.97654 1.22972 0.94311 0.86713 1.02940 1.63367 1.01756 1.20357 1.36944 1.22129 0.90390 1.01127 0.95480 1.19729 0.83541 0.84385 0.89293 1.90499 1.82692 1.53741 1.19295 1.41857 1.07539 1.59030 1.11854 1.19692 0.87669 1.42304 0.93104 0.87958 1.25250 0.98687 0.97191 0.96831 1.69618 1.23440 1.45769 1.15572 0.85865 0.79719 0.78747 0.79987 1.20420 1.20978 1.19473 1.22853 0.93855 0.93262 0.97164 0.93934 0.93907 0.89470 0.92403 0.92216 0.90412 0.92064 0.92051 0.76751 0.89804 0.90326 0.78352 0.90754 0.89527 0.88653 0.93558 0.89393 0.92976 0.77515 0.91927 0.88819 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.08 10.24 -35.23 -0.36 -3.44 16 3 C 0.08 0.62 4.67 37.16 0.17 0.79 16 4 C -0.11 -0.73 2.96 -91.77 -0.27 -1.00 16 5 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 6 C -0.14 -0.72 8.99 37.16 0.33 -0.39 16 7 C 0.52 4.63 7.15 -10.99 -0.08 4.55 16 8 O -0.54 -6.87 15.92 5.56 0.09 -6.78 16 9 N -0.73 -5.11 5.09 -60.29 -0.31 -5.41 16 10 C 0.10 0.92 4.71 -4.04 -0.02 0.90 16 11 C 0.10 0.97 0.92 -88.80 -0.08 0.88 16 12 O -0.54 -5.37 13.09 -35.23 -0.46 -5.83 16 13 C -0.15 -1.62 5.94 -24.60 -0.15 -1.76 16 14 C 0.06 0.89 5.74 -2.30 -0.01 0.88 16 15 N -0.50 -8.24 4.86 -232.69 -1.13 -9.37 16 16 C 0.04 0.74 5.05 -4.98 -0.03 0.71 16 17 C 0.45 10.60 7.58 -10.98 -0.08 10.52 16 18 O -0.58 -15.63 14.61 5.55 0.08 -15.54 16 19 N -0.57 -14.48 5.29 -10.97 -0.06 -14.54 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 24 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.06 0.72 6.23 -2.84 -0.02 0.70 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.21 8.14 -51.92 -0.42 -0.22 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 34 H 0.08 0.41 7.82 -51.93 -0.41 0.00 16 35 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 1.77 6.69 -40.82 -0.27 1.50 16 38 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.37 2.17 7.79 45.56 0.35 2.53 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.90 8.02 -51.93 -0.42 0.48 16 43 H 0.10 1.72 7.38 -51.93 -0.38 1.33 16 44 H 0.05 0.75 7.62 -51.93 -0.40 0.35 16 45 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 46 H 0.05 0.90 7.85 -51.92 -0.41 0.49 16 47 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.09 1.07 7.82 -51.93 -0.41 0.67 16 50 H 0.07 0.89 7.47 -51.92 -0.39 0.50 16 LS Contribution 407.77 15.07 6.15 6.15 Total: -1.00 -34.89 407.77 -7.24 -42.13 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.58 Total: 10.45 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 0.64 Total: 10.06 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.77 Total: -53.31 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.65 Total: -31.60 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.89 -7.24 -42.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724388156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.603 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds