Wall clock time and date at job start Wed Apr 1 2020 02:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99513 * 2 1 4 4 C 1.53006 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46955 * 55.00093 * 4 3 2 6 6 C 1.52999 * 109.46626 * 294.99621 * 4 3 2 7 7 C 1.50698 * 109.47184 * 175.00252 * 4 3 2 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 4 3 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 4 3 10 10 C 1.46504 * 119.99735 * 179.97438 * 9 7 4 11 11 C 1.53006 * 109.46883 * 179.97438 * 10 9 7 12 12 O 1.42897 * 110.62458 * 303.10124 * 11 10 9 13 13 C 1.55136 * 110.70711 * 66.39591 * 11 10 9 14 14 C 1.54903 * 101.65331 * 154.03928 * 13 11 10 15 15 N 1.47848 * 104.79467 * 322.92938 * 14 13 11 16 16 C 1.46896 * 110.99967 * 146.36551 * 15 14 13 17 17 C 1.50701 * 109.47351 * 69.15801 * 16 15 14 18 18 O 1.21284 * 119.99627 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99985 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00126 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00091 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00261 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46904 * 89.99664 * 24 22 20 26 26 H 1.48497 * 109.47272 * 209.99873 * 24 22 20 27 27 H 1.48503 * 109.46850 * 330.00145 * 24 22 20 28 28 C 1.47441 * 108.56459 * 24.09584 * 15 14 13 29 29 H 1.09001 * 109.47173 * 300.00021 * 1 2 3 30 30 H 1.09007 * 109.47491 * 59.99931 * 1 2 3 31 31 H 1.09003 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47442 * 59.99944 * 3 2 1 33 33 H 1.09007 * 109.47471 * 299.99799 * 3 2 1 34 34 H 1.09000 * 109.47160 * 60.00369 * 6 4 3 35 35 H 1.09002 * 109.46719 * 180.02562 * 6 4 3 36 36 H 1.08993 * 109.47839 * 299.99931 * 6 4 3 37 37 H 0.96998 * 119.99962 * 359.97438 * 9 7 4 38 38 H 1.08998 * 109.47135 * 299.99021 * 10 9 7 39 39 H 1.08993 * 109.47378 * 60.00104 * 10 9 7 40 40 H 0.96707 * 114.00420 * 59.30633 * 12 11 10 41 41 H 1.09005 * 110.99581 * 272.12885 * 13 11 10 42 42 H 1.09004 * 110.99058 * 35.94488 * 13 11 10 43 43 H 1.09003 * 110.37571 * 204.10081 * 14 13 11 44 44 H 1.08996 * 110.47143 * 81.80562 * 14 13 11 45 45 H 1.09001 * 109.47451 * 189.16323 * 16 15 14 46 46 H 1.09008 * 109.47093 * 309.15413 * 16 15 14 47 47 H 0.97000 * 120.00163 * 359.97438 * 19 17 16 48 48 H 0.96997 * 119.99689 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.89298 * 239.59956 * 28 15 14 50 50 H 1.09008 * 109.88892 * 118.41564 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5687 -0.8427 6 6 3.9961 0.5366 1.3065 7 6 4.1478 2.5561 -0.1244 8 8 3.4346 3.5337 -0.2047 9 7 5.4881 2.6960 -0.1469 10 6 6.0834 4.0292 -0.2678 11 6 7.6087 3.9085 -0.2683 12 8 8.0612 3.2410 0.9114 13 6 8.1003 3.1723 -1.5424 14 6 9.5356 3.7346 -1.6945 15 7 9.4311 5.1518 -1.2863 16 6 10.6622 5.6005 -0.6222 17 6 11.7805 5.6687 -1.6301 18 8 11.5725 5.3722 -2.7876 19 7 13.0120 6.0582 -1.2450 20 6 14.0294 6.1197 -2.1618 21 1 13.8440 5.8565 -3.1927 22 6 15.2991 6.5207 -1.7647 23 7 15.5248 6.8405 -0.5102 24 14 16.6853 6.6053 -3.0140 25 1 16.7196 7.9586 -3.6245 26 1 17.9790 6.3347 -2.3371 27 1 16.4592 5.5899 -4.0738 28 6 8.2661 5.2988 -0.3947 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.5532 -0.4553 1.3960 35 1 5.0828 0.4510 1.3062 36 1 3.6808 1.1527 2.1485 37 1 6.0585 1.9141 -0.0831 38 1 5.7549 4.4907 -1.1990 39 1 5.7685 4.6455 0.5742 40 1 7.7062 2.3479 1.0188 41 1 8.1180 2.0934 -1.3877 42 1 7.4859 3.4315 -2.4046 43 1 9.8639 3.6616 -2.7313 44 1 10.2253 3.2012 -1.0404 45 1 10.5024 6.5880 -0.1894 46 1 10.9267 4.8965 0.1669 47 1 13.1784 6.2949 -0.3192 48 1 16.4113 7.1201 -0.2329 49 1 7.5571 6.0065 -0.8245 50 1 8.5912 5.6458 0.5862 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724388156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:58 Heat of formation + Delta-G solvation = -192.508192 kcal Electronic energy + Delta-G solvation = -30160.020790 eV Core-core repulsion = 25800.140266 eV Total energy + Delta-G solvation = -4359.880524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.49702 -40.71266 -39.71938 -38.76187 -37.08528 -35.85880 -35.42348 -34.62832 -33.30928 -32.36382 -30.47421 -28.75405 -28.22641 -26.89361 -26.55739 -25.52568 -23.72264 -22.54158 -21.56781 -21.08436 -20.92564 -19.88664 -18.82047 -18.18154 -17.62459 -17.18492 -17.06303 -17.00795 -16.68715 -16.27153 -16.24078 -16.07088 -15.97130 -15.67234 -15.51779 -14.97104 -14.89658 -14.43730 -14.40384 -14.13043 -13.72869 -13.69452 -13.54512 -13.45617 -13.25634 -13.17779 -12.97913 -12.68546 -12.48588 -12.44226 -12.40046 -12.31848 -12.23033 -12.11192 -11.93052 -11.83734 -11.48875 -11.03372 -10.89352 -10.68168 -10.30767 -10.21709 -10.00130 -9.26605 -8.45692 -5.94538 1.38392 1.41793 1.53083 1.54617 1.88140 2.06244 2.28916 2.75650 2.90432 3.03712 3.20915 3.35504 3.44415 3.52875 3.58985 3.81299 3.87338 4.00971 4.24007 4.26137 4.31070 4.32259 4.40782 4.46509 4.49687 4.50516 4.57967 4.63467 4.65406 4.69621 4.71679 4.82957 4.85341 4.90234 4.94358 4.99718 5.07640 5.12010 5.26826 5.32115 5.41406 5.85318 5.99822 6.09332 6.12756 6.38596 6.61424 6.70290 7.12264 7.13691 7.57046 8.12908 8.71843 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.039456 B = 0.001622 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.480370 B =17261.440880 C =17314.966442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.080 3.920 4 C -0.104 4.104 5 H 0.124 0.876 6 C -0.137 4.137 7 C 0.524 3.476 8 O -0.581 6.581 9 N -0.711 5.711 10 C 0.113 3.887 11 C 0.116 3.884 12 O -0.555 6.555 13 C -0.141 4.141 14 C 0.054 3.946 15 N -0.522 5.522 16 C 0.054 3.946 17 C 0.442 3.558 18 O -0.615 6.615 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.052 3.948 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.414 0.586 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.389 0.611 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.104 0.896 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.962 -14.692 6.957 30.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.003 3.997 4 C -0.125 4.125 5 H 0.142 0.858 6 C -0.195 4.195 7 C 0.311 3.689 8 O -0.460 6.460 9 N -0.364 5.364 10 C -0.011 4.011 11 C 0.074 3.926 12 O -0.363 6.363 13 C -0.179 4.179 14 C -0.073 4.073 15 N -0.246 5.246 16 C -0.077 4.077 17 C 0.229 3.771 18 O -0.501 6.501 19 N -0.213 5.213 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.076 4.076 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.251 0.749 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.239 0.761 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.124 0.876 46 H 0.083 0.917 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.122 0.878 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.039 -13.414 5.882 29.876 hybrid contribution 0.921 -0.507 0.473 1.153 sum -25.118 -13.921 6.355 29.413 Atomic orbital electron populations 1.22929 0.79432 1.04003 1.00670 1.87770 1.21350 1.27617 1.95586 1.22174 0.92373 0.84309 1.00881 1.21169 0.94549 0.93228 1.03545 0.85805 1.21740 1.02668 1.01448 0.93609 1.20753 0.82244 0.91170 0.74692 1.90723 1.61892 1.42283 1.51141 1.45703 1.06463 1.09782 1.74480 1.21783 0.91165 0.85086 1.03114 1.22453 0.91272 0.93548 0.85321 1.86647 1.73614 1.33695 1.42381 1.23397 0.95007 1.01378 0.98113 1.22880 0.97288 0.86669 1.00466 1.63271 1.01926 1.21117 1.38294 1.21957 0.89268 1.02673 0.93806 1.20738 0.84110 0.82329 0.89888 1.90471 1.83394 1.54811 1.21380 1.41930 1.07956 1.59744 1.11656 1.19664 0.89302 1.44479 0.92813 0.90315 1.26037 1.00342 0.96102 0.98767 1.69681 1.24310 1.45503 1.16734 0.84924 0.76978 0.78749 0.77649 1.19690 1.19515 1.19753 1.22934 0.92679 0.95387 0.96620 0.93435 0.93631 0.87920 0.93188 0.93435 0.90317 0.89834 0.92847 0.74867 0.90425 0.90899 0.76075 0.87629 0.89202 0.92219 0.94643 0.87550 0.91718 0.77125 0.91336 0.87758 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.86 10.24 -148.98 -1.53 -7.38 16 3 C 0.08 1.18 4.67 71.98 0.34 1.52 16 4 C -0.10 -1.17 2.96 -11.54 -0.03 -1.20 16 5 H 0.12 1.02 8.14 -2.39 -0.02 1.01 16 6 C -0.14 -1.06 8.99 71.98 0.65 -0.42 16 7 C 0.52 8.36 7.15 87.66 0.63 8.99 16 8 O -0.58 -14.51 15.92 -3.04 -0.05 -14.56 16 9 N -0.71 -8.06 5.09 -463.05 -2.36 -10.42 16 10 C 0.11 1.76 4.71 86.38 0.41 2.17 16 11 C 0.12 2.03 0.92 -9.61 -0.01 2.02 16 12 O -0.56 -9.22 13.09 -148.98 -1.95 -11.17 16 13 C -0.14 -2.64 5.94 31.98 0.19 -2.45 16 14 C 0.05 1.67 5.74 86.77 0.50 2.16 16 15 N -0.52 -16.94 4.86 -890.10 -4.33 -21.26 16 16 C 0.05 1.97 5.05 85.56 0.43 2.40 16 17 C 0.44 21.55 7.58 87.66 0.66 22.22 16 18 O -0.61 -34.42 14.61 -3.04 -0.04 -34.47 16 19 N -0.58 -30.14 5.29 -306.99 -1.62 -31.77 16 20 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 23 N -0.92 -50.24 13.05 21.66 0.28 -49.95 16 24 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 C 0.05 1.22 6.23 86.64 0.54 1.75 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.80 7.95 -2.38 -0.02 0.78 16 34 H 0.08 0.64 7.82 -2.39 -0.02 0.62 16 35 H 0.08 0.27 7.56 -2.39 -0.02 0.25 16 36 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 37 H 0.41 2.07 6.69 -92.71 -0.62 1.45 16 38 H 0.08 1.37 8.11 -2.39 -0.02 1.35 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.39 3.00 7.79 -74.05 -0.58 2.42 16 41 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.09 1.68 8.02 -2.39 -0.02 1.66 16 43 H 0.06 2.23 7.38 -2.39 -0.02 2.21 16 44 H 0.04 1.14 7.62 -2.39 -0.02 1.12 16 45 H 0.11 3.43 8.03 -2.39 -0.02 3.41 16 46 H 0.06 2.18 7.85 -2.38 -0.02 2.16 16 47 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 48 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 49 H 0.10 2.22 7.82 -2.39 -0.02 2.20 16 50 H 0.07 1.71 7.47 -2.38 -0.02 1.69 16 Total: -1.00 -77.55 407.77 -3.70 -81.25 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.96 Total: 32.36 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 6.83 Total: 22.07 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -8.03 Total: -113.41 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -3.57 Total: -67.58 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -77.55 -3.70 -81.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724388156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.262 kcal (2) G-P(sol) polarization free energy of solvation -77.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds