Wall clock time and date at job start Wed Apr 1 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99851 * 2 1 4 4 C 1.52999 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46716 * 55.00437 * 4 3 2 6 6 C 1.52997 * 109.47317 * 295.00528 * 4 3 2 7 7 C 1.50697 * 109.46961 * 175.00086 * 4 3 2 8 8 O 1.21277 * 120.00304 * 0.02562 * 7 4 3 9 9 N 1.34778 * 119.99637 * 180.02562 * 7 4 3 10 10 C 1.46505 * 119.99943 * 180.02562 * 9 7 4 11 11 C 1.52993 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.42901 * 110.27594 * 62.91477 * 11 10 9 13 13 C 1.54596 * 110.31154 * 300.71463 * 11 10 9 14 14 C 1.54939 * 102.92314 * 219.13028 * 13 11 10 15 15 N 1.48529 * 103.22704 * 37.41282 * 14 13 11 16 16 C 1.46906 * 111.00151 * 200.27917 * 15 14 13 17 17 C 1.50700 * 109.46760 * 307.39809 * 16 15 14 18 18 O 1.21288 * 120.00292 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99522 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99635 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99960 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99815 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00460 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99945 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47124 * 90.00206 * 24 22 20 26 26 H 1.48508 * 109.47023 * 210.00203 * 24 22 20 27 27 H 1.48500 * 109.46998 * 329.99854 * 24 22 20 28 28 C 1.47906 * 105.82280 * 320.79415 * 15 14 13 29 29 H 1.09004 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47392 * 299.99675 * 1 2 3 31 31 H 1.08996 * 109.47221 * 60.00002 * 1 2 3 32 32 H 1.09006 * 109.46763 * 59.99684 * 3 2 1 33 33 H 1.08997 * 109.47320 * 300.00734 * 3 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 6 4 3 35 35 H 1.09001 * 109.46832 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.47261 * 59.99813 * 6 4 3 37 37 H 0.97000 * 120.00446 * 0.02562 * 9 7 4 38 38 H 1.09000 * 109.47120 * 300.00214 * 10 9 7 39 39 H 1.09002 * 109.46801 * 59.99643 * 10 9 7 40 40 H 0.96699 * 113.99272 * 300.69437 * 12 11 10 41 41 H 1.09004 * 110.72047 * 337.48268 * 13 11 10 42 42 H 1.08995 * 110.72511 * 100.77055 * 13 11 10 43 43 H 1.08995 * 110.66500 * 278.97854 * 14 13 11 44 44 H 1.09004 * 110.80963 * 155.91493 * 14 13 11 45 45 H 1.09001 * 109.46817 * 67.39311 * 16 15 14 46 46 H 1.08998 * 109.47249 * 187.39538 * 16 15 14 47 47 H 0.96995 * 120.00601 * 359.97438 * 19 17 16 48 48 H 0.96999 * 120.00851 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.91439 * 265.98021 * 28 15 14 50 50 H 1.08997 * 109.91669 * 144.68181 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5684 -0.8410 6 6 3.9952 0.5370 1.3082 7 6 4.1479 2.5562 -0.1232 8 8 3.4347 3.5338 -0.2035 9 7 5.4882 2.6961 -0.1446 10 6 6.0837 4.0293 -0.2644 11 6 7.6088 3.9084 -0.2652 12 8 8.0457 3.1602 -1.4016 13 6 8.0946 3.2381 1.0404 14 6 9.3805 4.0328 1.3803 15 7 9.0348 5.4228 0.9872 16 6 10.2459 6.2281 0.7802 17 6 11.1323 6.1234 1.9945 18 8 10.7887 5.4452 2.9395 19 7 12.3068 6.7835 2.0303 20 6 13.1129 6.6888 3.1352 21 1 12.8069 6.0849 3.9767 22 6 14.3240 7.3688 3.1720 23 7 14.6966 8.1033 2.1479 24 14 15.4227 7.2392 4.6772 25 1 16.3544 6.0946 4.5128 26 1 16.2022 8.4939 4.8306 27 1 14.5849 7.0261 5.8846 28 6 8.2557 5.3059 -0.2646 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.6793 1.1534 2.1499 35 1 5.0818 0.4506 1.3084 36 1 3.5522 -0.4549 1.3977 37 1 6.0586 1.9142 -0.0807 38 1 5.7557 4.4914 -1.1956 39 1 5.7679 4.6452 0.5777 40 1 7.6869 2.2632 -1.4434 41 1 7.3522 3.3496 1.8307 42 1 8.3247 2.1862 0.8715 43 1 10.2247 3.6665 0.7963 44 1 9.5993 3.9778 2.4467 45 1 10.7824 5.8593 -0.0941 46 1 9.9670 7.2699 0.6226 47 1 12.5818 7.3256 1.2745 48 1 15.5419 8.5784 2.1737 49 1 8.9172 5.4092 -1.1247 50 1 7.4821 6.0732 -0.2934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724388160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:06 Heat of formation + Delta-G solvation = -159.919407 kcal Electronic energy + Delta-G solvation = -30278.832143 eV Core-core repulsion = 25920.364775 eV Total energy + Delta-G solvation = -4358.467369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.65272 -39.64770 -38.30474 -37.98973 -35.92925 -34.67656 -34.02939 -33.90216 -31.52070 -31.02219 -29.36752 -27.84803 -27.22881 -26.18515 -25.34562 -24.01820 -23.00367 -21.51046 -20.59206 -20.14045 -19.28868 -18.11253 -17.88606 -17.17713 -16.55310 -16.36240 -16.14652 -15.98150 -15.64911 -15.40555 -15.22116 -14.91205 -14.57338 -14.40975 -14.20066 -13.88183 -13.80994 -13.47019 -13.31597 -13.05519 -12.94482 -12.70252 -12.60284 -12.31559 -11.98510 -11.88952 -11.78353 -11.68153 -11.56239 -11.33773 -11.21831 -11.18226 -10.99799 -10.87009 -10.41522 -10.24798 -10.15541 -10.10124 -10.05964 -9.51259 -9.45696 -8.42590 -8.05841 -7.94190 -6.44197 -3.85292 2.26376 2.57797 3.15933 3.25055 3.30693 3.47124 3.72504 3.86559 4.12938 4.17324 4.26320 4.35817 4.43033 4.49132 4.57293 4.67312 4.83857 4.92622 4.94367 5.04729 5.19156 5.22362 5.22616 5.24139 5.25987 5.35889 5.37990 5.47159 5.53310 5.56113 5.66615 5.70684 5.76056 5.77375 5.90669 5.93720 6.02931 6.19818 6.23930 6.58719 6.67929 7.02808 7.10359 7.21138 7.35709 7.52817 7.81348 8.03009 8.58412 9.14992 9.50732 10.02029 10.73349 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.001717 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.531751 B =16298.910063 C =16748.822630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.079 3.921 4 C -0.110 4.110 5 H 0.107 0.893 6 C -0.142 4.142 7 C 0.523 3.477 8 O -0.538 6.538 9 N -0.726 5.726 10 C 0.102 3.898 11 C 0.111 3.889 12 O -0.550 6.550 13 C -0.153 4.153 14 C 0.042 3.958 15 N -0.492 5.492 16 C 0.035 3.965 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.560 5.560 20 C -0.301 4.301 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 C 0.048 3.952 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.398 0.602 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.371 0.629 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.121 0.879 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.393 0.607 48 H 0.272 0.728 49 H 0.062 0.938 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.882 -14.720 -8.385 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.002 3.998 4 C -0.131 4.131 5 H 0.125 0.875 6 C -0.199 4.199 7 C 0.309 3.691 8 O -0.414 6.414 9 N -0.378 5.378 10 C -0.022 4.022 11 C 0.070 3.930 12 O -0.355 6.355 13 C -0.191 4.191 14 C -0.085 4.085 15 N -0.217 5.217 16 C -0.096 4.096 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.196 5.196 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.081 4.081 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.233 0.767 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.218 0.782 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.139 0.861 45 H 0.069 0.931 46 H 0.110 0.890 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.293 -13.651 -7.552 27.210 hybrid contribution 1.120 -0.597 -0.403 1.331 sum -21.174 -14.248 -7.954 26.732 Atomic orbital electron populations 1.22738 0.80562 1.02777 1.00253 1.87794 1.20021 1.27812 1.95561 1.22222 0.91413 0.84306 1.01822 1.21178 0.95492 0.94436 1.01982 0.87536 1.21750 1.01347 1.01852 0.94986 1.20373 0.82162 0.90860 0.75729 1.90732 1.60860 1.40750 1.49069 1.45905 1.06734 1.09866 1.75345 1.22123 0.92239 0.84307 1.03544 1.22336 0.91142 0.93422 0.86142 1.86654 1.73726 1.29347 1.45771 1.23306 0.99704 0.99260 0.96818 1.23437 0.94125 0.86174 1.04797 1.64727 1.18733 1.12339 1.25854 1.22125 0.90777 0.99503 0.97208 1.19668 0.83309 0.85086 0.89169 1.90427 1.73918 1.44081 1.38271 1.41845 1.16532 1.42963 1.18291 1.19704 0.98897 1.28136 0.96268 0.87857 1.25269 0.97800 0.96223 0.98563 1.69609 1.23342 1.30797 1.30380 0.85853 0.79630 0.77562 0.81209 1.20426 1.20896 1.19394 1.22838 0.98562 0.93440 0.93262 0.89496 0.93906 0.93955 0.92354 0.92266 0.91966 0.91975 0.90461 0.76692 0.90459 0.89595 0.78200 0.89782 0.90807 0.94219 0.86121 0.93079 0.89025 0.77409 0.91819 0.91966 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.22 10.24 -35.23 -0.36 -3.58 16 3 C 0.08 0.65 4.67 37.16 0.17 0.83 16 4 C -0.11 -0.78 2.96 -91.78 -0.27 -1.05 16 5 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 6 C -0.14 -0.86 8.99 37.16 0.33 -0.53 16 7 C 0.52 4.96 7.15 -10.99 -0.08 4.88 16 8 O -0.54 -7.23 15.92 5.56 0.09 -7.15 16 9 N -0.73 -5.63 5.01 -60.30 -0.30 -5.93 16 10 C 0.10 0.99 4.50 -4.04 -0.02 0.98 16 11 C 0.11 1.18 1.05 -89.26 -0.09 1.09 16 12 O -0.55 -5.61 12.95 -35.23 -0.46 -6.06 16 13 C -0.15 -1.73 5.64 -24.87 -0.14 -1.87 16 14 C 0.04 0.68 5.31 -1.90 -0.01 0.67 16 15 N -0.49 -8.09 5.26 -231.89 -1.22 -9.31 16 16 C 0.04 0.64 5.52 -4.97 -0.03 0.61 16 17 C 0.44 10.27 7.49 -10.98 -0.08 10.19 16 18 O -0.58 -15.10 13.09 5.55 0.07 -15.03 16 19 N -0.56 -14.07 5.29 -10.96 -0.06 -14.12 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 24 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 C 0.05 0.62 6.18 -2.75 -0.02 0.60 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.52 7.96 -51.93 -0.41 0.10 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.29 7.57 -51.93 -0.39 -0.10 16 36 H 0.08 0.47 7.82 -51.93 -0.41 0.06 16 37 H 0.40 2.05 6.75 -40.82 -0.28 1.78 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.37 2.29 8.14 45.56 0.37 2.66 16 41 H 0.08 0.95 7.86 -51.93 -0.41 0.55 16 42 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 43 H 0.04 0.68 8.02 -51.93 -0.42 0.26 16 44 H 0.12 2.35 5.96 -51.93 -0.31 2.04 16 45 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 46 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.06 0.83 7.39 -51.93 -0.38 0.45 16 50 H 0.09 1.07 7.68 -51.93 -0.40 0.67 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -33.66 405.00 -7.29 -40.95 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -7.50 Total: 12.11 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 0.64 Total: 9.78 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.86 Total: -52.97 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.66 Total: -31.82 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.66 -7.29 -40.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724388160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.973 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds