Wall clock time and date at job start Wed Apr 1 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99851 * 2 1 4 4 C 1.52999 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46716 * 55.00437 * 4 3 2 6 6 C 1.52997 * 109.47317 * 295.00528 * 4 3 2 7 7 C 1.50697 * 109.46961 * 175.00086 * 4 3 2 8 8 O 1.21277 * 120.00304 * 0.02562 * 7 4 3 9 9 N 1.34778 * 119.99637 * 180.02562 * 7 4 3 10 10 C 1.46505 * 119.99943 * 180.02562 * 9 7 4 11 11 C 1.52993 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.42901 * 110.27594 * 62.91477 * 11 10 9 13 13 C 1.54596 * 110.31154 * 300.71463 * 11 10 9 14 14 C 1.54939 * 102.92314 * 219.13028 * 13 11 10 15 15 N 1.48529 * 103.22704 * 37.41282 * 14 13 11 16 16 C 1.46906 * 111.00151 * 200.27917 * 15 14 13 17 17 C 1.50700 * 109.46760 * 307.39809 * 16 15 14 18 18 O 1.21288 * 120.00292 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99522 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99635 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99960 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99815 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00460 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99945 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47124 * 90.00206 * 24 22 20 26 26 H 1.48508 * 109.47023 * 210.00203 * 24 22 20 27 27 H 1.48500 * 109.46998 * 329.99854 * 24 22 20 28 28 C 1.47906 * 105.82280 * 320.79415 * 15 14 13 29 29 H 1.09004 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47392 * 299.99675 * 1 2 3 31 31 H 1.08996 * 109.47221 * 60.00002 * 1 2 3 32 32 H 1.09006 * 109.46763 * 59.99684 * 3 2 1 33 33 H 1.08997 * 109.47320 * 300.00734 * 3 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 6 4 3 35 35 H 1.09001 * 109.46832 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.47261 * 59.99813 * 6 4 3 37 37 H 0.97000 * 120.00446 * 0.02562 * 9 7 4 38 38 H 1.09000 * 109.47120 * 300.00214 * 10 9 7 39 39 H 1.09002 * 109.46801 * 59.99643 * 10 9 7 40 40 H 0.96699 * 113.99272 * 300.69437 * 12 11 10 41 41 H 1.09004 * 110.72047 * 337.48268 * 13 11 10 42 42 H 1.08995 * 110.72511 * 100.77055 * 13 11 10 43 43 H 1.08995 * 110.66500 * 278.97854 * 14 13 11 44 44 H 1.09004 * 110.80963 * 155.91493 * 14 13 11 45 45 H 1.09001 * 109.46817 * 67.39311 * 16 15 14 46 46 H 1.08998 * 109.47249 * 187.39538 * 16 15 14 47 47 H 0.96995 * 120.00601 * 359.97438 * 19 17 16 48 48 H 0.96999 * 120.00851 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.91439 * 265.98021 * 28 15 14 50 50 H 1.08997 * 109.91669 * 144.68181 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5684 -0.8410 6 6 3.9952 0.5370 1.3082 7 6 4.1479 2.5562 -0.1232 8 8 3.4347 3.5338 -0.2035 9 7 5.4882 2.6961 -0.1446 10 6 6.0837 4.0293 -0.2644 11 6 7.6088 3.9084 -0.2652 12 8 8.0457 3.1602 -1.4016 13 6 8.0946 3.2381 1.0404 14 6 9.3805 4.0328 1.3803 15 7 9.0348 5.4228 0.9872 16 6 10.2459 6.2281 0.7802 17 6 11.1323 6.1234 1.9945 18 8 10.7887 5.4452 2.9395 19 7 12.3068 6.7835 2.0303 20 6 13.1129 6.6888 3.1352 21 1 12.8069 6.0849 3.9767 22 6 14.3240 7.3688 3.1720 23 7 14.6966 8.1033 2.1479 24 14 15.4227 7.2392 4.6772 25 1 16.3544 6.0946 4.5128 26 1 16.2022 8.4939 4.8306 27 1 14.5849 7.0261 5.8846 28 6 8.2557 5.3059 -0.2646 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.6793 1.1534 2.1499 35 1 5.0818 0.4506 1.3084 36 1 3.5522 -0.4549 1.3977 37 1 6.0586 1.9142 -0.0807 38 1 5.7557 4.4914 -1.1956 39 1 5.7679 4.6452 0.5777 40 1 7.6869 2.2632 -1.4434 41 1 7.3522 3.3496 1.8307 42 1 8.3247 2.1862 0.8715 43 1 10.2247 3.6665 0.7963 44 1 9.5993 3.9778 2.4467 45 1 10.7824 5.8593 -0.0941 46 1 9.9670 7.2699 0.6226 47 1 12.5818 7.3256 1.2745 48 1 15.5419 8.5784 2.1737 49 1 8.9172 5.4092 -1.1247 50 1 7.4821 6.0732 -0.2934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724388160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:05 Heat of formation + Delta-G solvation = -189.787579 kcal Electronic energy + Delta-G solvation = -30280.127324 eV Core-core repulsion = 25920.364775 eV Total energy + Delta-G solvation = -4359.762550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51604 -40.75772 -39.73416 -38.75194 -37.12511 -35.86874 -35.46169 -34.62014 -33.35880 -32.33880 -30.38362 -28.73583 -28.22543 -26.89688 -26.56202 -25.49120 -23.73884 -22.70366 -21.45689 -21.08776 -20.94969 -19.88970 -18.77431 -18.10430 -17.57399 -17.28942 -17.09332 -16.94207 -16.75243 -16.34896 -16.30298 -16.06376 -15.88331 -15.67531 -15.60020 -14.98107 -14.74945 -14.63408 -14.36430 -14.23724 -13.73708 -13.67530 -13.47437 -13.45539 -13.18731 -13.15076 -12.99888 -12.71216 -12.44549 -12.43807 -12.34724 -12.31620 -12.30235 -12.11460 -11.92459 -11.82808 -11.49469 -11.04628 -10.87503 -10.67943 -10.22502 -10.17125 -10.01413 -9.40085 -8.47165 -5.96063 1.37580 1.41762 1.53225 1.54481 1.89445 2.02369 2.27658 2.69674 2.90631 3.18497 3.21434 3.28399 3.43651 3.58040 3.60755 3.76544 3.87127 4.01132 4.22049 4.27909 4.32331 4.32703 4.44117 4.46859 4.50004 4.50672 4.61507 4.63370 4.65676 4.69516 4.72825 4.79939 4.85470 4.89738 4.97218 4.99309 5.07015 5.22611 5.28217 5.31756 5.40820 5.80363 5.89368 6.06451 6.12864 6.39847 6.59175 6.72468 7.11747 7.12779 7.53987 8.09335 8.70218 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.001717 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.531751 B =16298.910063 C =16748.822630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.080 3.920 4 C -0.102 4.102 5 H 0.128 0.872 6 C -0.138 4.138 7 C 0.523 3.477 8 O -0.581 6.581 9 N -0.711 5.711 10 C 0.112 3.888 11 C 0.128 3.872 12 O -0.558 6.558 13 C -0.139 4.139 14 C 0.039 3.961 15 N -0.507 5.507 16 C 0.046 3.954 17 C 0.440 3.560 18 O -0.612 6.612 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.081 0.919 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.043 3.957 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.391 0.609 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.026 0.974 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.110 0.890 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.062 0.938 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.283 -16.089 -9.257 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.003 3.997 4 C -0.123 4.123 5 H 0.146 0.854 6 C -0.196 4.196 7 C 0.310 3.690 8 O -0.461 6.461 9 N -0.364 5.364 10 C -0.013 4.013 11 C 0.087 3.913 12 O -0.366 6.366 13 C -0.178 4.178 14 C -0.088 4.088 15 N -0.232 5.232 16 C -0.085 4.085 17 C 0.227 3.773 18 O -0.498 6.498 19 N -0.209 5.209 20 C -0.463 4.463 21 H 0.099 0.901 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.085 4.085 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.252 0.748 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.241 0.759 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.044 0.956 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.128 0.872 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.689 -15.059 -8.448 28.512 hybrid contribution 1.174 -0.212 -0.162 1.204 sum -21.515 -15.272 -8.610 27.753 Atomic orbital electron populations 1.22928 0.79430 1.04018 1.00663 1.87769 1.21352 1.27575 1.95586 1.22168 0.92344 0.84321 1.00877 1.21158 0.94550 0.93175 1.03433 0.85430 1.21746 1.02573 1.01504 0.93769 1.20781 0.82262 0.91219 0.74701 1.90719 1.61911 1.42310 1.51164 1.45734 1.06482 1.09791 1.74434 1.21884 0.91454 0.85076 1.02843 1.21991 0.91196 0.92185 0.85959 1.86625 1.74050 1.30836 1.45114 1.23246 0.97055 1.00264 0.97197 1.23265 0.96257 0.87137 1.02170 1.64697 1.17994 1.12336 1.28173 1.22010 0.90698 1.01154 0.94634 1.20626 0.83006 0.83358 0.90289 1.90427 1.74503 1.44890 1.40028 1.41917 1.17203 1.43784 1.17959 1.19681 1.00391 1.29364 0.96867 0.90105 1.26045 0.98451 0.95400 1.01314 1.69673 1.23863 1.30918 1.31656 0.84918 0.77722 0.78089 0.77543 1.19602 1.19626 1.19744 1.22924 0.98481 0.95606 0.91456 0.87873 0.93579 0.93515 0.93426 0.93219 0.93123 0.90070 0.90155 0.74802 0.90758 0.90956 0.75891 0.89587 0.87824 0.95566 0.89981 0.91574 0.87175 0.77072 0.91299 0.91934 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -6.11 10.24 -148.98 -1.53 -7.64 16 3 C 0.08 1.26 4.67 71.98 0.34 1.59 16 4 C -0.10 -1.26 2.96 -11.54 -0.03 -1.29 16 5 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.14 -1.37 8.99 71.98 0.65 -0.72 16 7 C 0.52 9.09 7.15 87.66 0.63 9.72 16 8 O -0.58 -15.38 15.92 -3.02 -0.05 -15.42 16 9 N -0.71 -9.24 5.01 -463.07 -2.32 -11.56 16 10 C 0.11 1.96 4.50 86.38 0.39 2.35 16 11 C 0.13 2.43 1.05 -9.92 -0.01 2.42 16 12 O -0.56 -9.58 12.95 -148.98 -1.93 -11.51 16 13 C -0.14 -2.88 5.64 31.80 0.18 -2.70 16 14 C 0.04 1.27 5.31 86.65 0.46 1.73 16 15 N -0.51 -16.39 5.26 -887.55 -4.67 -21.06 16 16 C 0.05 1.65 5.52 85.56 0.47 2.12 16 17 C 0.44 20.90 7.49 87.66 0.66 21.56 16 18 O -0.61 -32.92 13.09 -3.05 -0.04 -32.96 16 19 N -0.57 -29.41 5.29 -306.99 -1.62 -31.03 16 20 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 23 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 24 Si 0.99 42.78 29.55 68.60 2.03 44.80 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 C 0.04 1.05 6.18 86.45 0.53 1.59 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.05 0.86 7.96 -2.39 -0.02 0.84 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.49 7.57 -2.39 -0.02 0.47 16 36 H 0.08 0.79 7.82 -2.38 -0.02 0.77 16 37 H 0.41 2.75 6.75 -92.71 -0.63 2.12 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.39 3.25 8.14 -74.06 -0.60 2.64 16 41 H 0.09 1.79 7.86 -2.38 -0.02 1.77 16 42 H 0.10 1.53 8.08 -2.39 -0.02 1.51 16 43 H 0.03 0.90 8.02 -2.39 -0.02 0.88 16 44 H 0.08 3.31 5.96 -2.38 -0.01 3.30 16 45 H 0.07 2.16 7.81 -2.39 -0.02 2.14 16 46 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 47 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 48 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 49 H 0.06 1.54 7.39 -2.39 -0.02 1.52 16 50 H 0.10 2.25 7.68 -2.39 -0.02 2.23 16 Total: -1.00 -74.82 405.00 -4.05 -78.86 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -0.99 Total: 35.30 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 6.78 Total: 21.62 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -8.33 Total: -113.05 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: -3.54 Total: -67.53 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -74.82 -4.05 -78.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724388160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.926 kcal (2) G-P(sol) polarization free energy of solvation -74.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds