Wall clock time and date at job start Wed Apr 1 2020 02:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46933 * 2 1 4 4 C 1.42903 * 114.00256 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47237 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00366 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99752 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99804 * 184.72397 * 7 5 4 9 9 C 1.52997 * 109.50612 * 296.61626 * 8 7 5 10 10 O 1.42902 * 109.46742 * 305.21057 * 9 8 7 11 11 C 1.53124 * 109.50129 * 176.53532 * 8 7 5 12 12 C 1.53122 * 109.15940 * 297.71675 * 11 8 7 13 13 C 1.53039 * 109.27838 * 302.34698 * 12 11 8 14 14 N 1.46850 * 109.52611 * 59.17819 * 13 12 11 15 15 C 1.46890 * 111.00060 * 174.16048 * 14 13 12 16 16 C 1.50705 * 109.47348 * 66.04731 * 15 14 13 17 17 O 1.21292 * 119.99723 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00144 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00009 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99730 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00124 * 179.72928 * 19 18 16 22 22 N 1.31414 * 119.99816 * 0.27015 * 21 19 18 23 23 Si 1.86799 * 120.00126 * 180.27685 * 21 19 18 24 24 H 1.48498 * 109.47025 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47275 * 119.99430 * 23 21 19 26 26 H 1.48503 * 109.46862 * 239.99490 * 23 21 19 27 27 C 1.46841 * 111.19620 * 298.26064 * 14 13 12 28 28 H 1.09001 * 109.47364 * 60.00039 * 1 2 3 29 29 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47328 * 300.00035 * 1 2 3 31 31 H 1.09004 * 109.47077 * 240.00638 * 2 1 3 32 32 H 1.08993 * 109.47062 * 120.00047 * 2 1 3 33 33 H 1.08998 * 109.46650 * 60.00173 * 4 3 2 34 34 H 1.08996 * 109.47191 * 300.00700 * 4 3 2 35 35 H 0.96996 * 119.99993 * 4.73185 * 7 5 4 36 36 H 1.09000 * 109.47301 * 65.20963 * 9 8 7 37 37 H 1.08997 * 109.47183 * 185.21619 * 9 8 7 38 38 H 0.96705 * 113.99782 * 180.02562 * 10 9 8 39 39 H 1.08998 * 109.52108 * 177.81266 * 11 8 7 40 40 H 1.09000 * 109.57212 * 57.64966 * 11 8 7 41 41 H 1.08995 * 109.50236 * 182.40804 * 12 11 8 42 42 H 1.08998 * 109.50595 * 62.28668 * 12 11 8 43 43 H 1.09007 * 109.46186 * 299.16487 * 13 12 11 44 44 H 1.09001 * 109.45387 * 179.19570 * 13 12 11 45 45 H 1.09003 * 109.47470 * 306.04828 * 15 14 13 46 46 H 1.08995 * 109.47267 * 186.04999 * 15 14 13 47 47 H 0.96998 * 120.00505 * 0.02562 * 18 16 15 48 48 H 0.97000 * 119.99953 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.46309 * 181.75649 * 27 14 13 50 50 H 1.08994 * 109.46443 * 301.72442 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8193 2.9163 0.0012 6 8 2.9609 3.7730 0.0006 7 7 5.1208 3.2664 0.0013 8 6 5.4996 4.6777 0.1063 9 6 4.9801 5.4384 -1.1153 10 8 5.4517 4.8055 -2.3065 11 6 7.0251 4.7941 0.1704 12 6 7.5312 4.0806 1.4271 13 6 6.8661 4.6963 2.6602 14 7 5.4080 4.5591 2.5513 15 6 4.7433 5.0143 3.7796 16 6 4.9525 6.4977 3.9440 17 8 5.5929 7.1149 3.1192 18 7 4.4281 7.1385 5.0073 19 6 4.6180 8.4881 5.1565 20 1 5.1882 9.0376 4.4221 21 6 4.0727 9.1498 6.2499 22 7 3.3793 8.4810 7.1437 23 14 4.3248 10.9899 6.4491 24 1 5.1359 11.5038 5.3163 25 1 3.0057 11.6716 6.4634 26 1 5.0339 11.2569 7.7263 27 6 4.8934 5.2761 1.3777 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8339 0.9766 -0.8892 34 1 3.8333 0.9768 0.8907 35 1 5.8066 2.5841 -0.0684 36 1 3.8901 5.4349 -1.1090 37 1 5.3403 6.4667 -1.0832 38 1 5.1606 5.2357 -3.1222 39 1 7.3088 5.8458 0.2094 40 1 7.4641 4.3309 -0.7133 41 1 8.6125 4.1966 1.5008 42 1 7.2813 3.0212 1.3697 43 1 7.1276 5.7526 2.7246 44 1 7.2136 4.1809 3.5555 45 1 5.1661 4.4906 4.6371 46 1 3.6760 4.8029 3.7149 47 1 3.9164 6.6449 5.6671 48 1 2.9983 8.9429 7.9068 49 1 3.8081 5.1820 1.3417 50 1 5.1642 6.3295 1.4481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724631769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:35 Heat of formation + Delta-G solvation = -155.999691 kcal Electronic energy + Delta-G solvation = -32172.511785 eV Core-core repulsion = 27814.214388 eV Total energy + Delta-G solvation = -4358.297397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.55462 -38.99582 -38.07903 -37.08296 -36.30980 -34.41734 -33.68202 -32.29617 -31.73911 -31.27853 -30.60777 -27.42044 -27.26203 -25.63302 -24.66667 -22.98682 -22.81286 -21.63725 -20.68754 -19.31444 -18.97817 -17.86923 -17.31309 -17.19401 -16.86666 -16.51177 -16.01066 -15.45432 -15.31972 -14.88557 -14.70216 -14.65468 -14.48243 -14.06395 -13.88867 -13.85422 -13.45334 -13.10749 -12.96372 -12.87380 -12.81923 -12.57615 -12.41772 -11.97249 -11.80565 -11.60741 -11.56312 -11.41927 -11.32175 -11.23117 -10.98401 -10.60531 -10.38670 -10.35755 -10.26476 -10.21933 -10.03247 -9.83467 -9.50090 -9.19727 -9.17223 -8.73939 -7.99311 -7.35643 -6.44900 -3.86229 2.81433 2.90078 3.13085 3.24419 3.31129 3.83199 3.90951 4.08078 4.15470 4.58994 4.69702 4.81661 4.85585 4.93216 5.02568 5.04471 5.07025 5.13517 5.14711 5.21625 5.22273 5.45069 5.47817 5.55423 5.61578 5.70506 5.70879 5.85402 5.88586 5.93535 5.98214 6.05138 6.07490 6.16078 6.20401 6.28115 6.41370 6.60481 6.62424 6.80504 6.94465 7.40360 7.51570 7.52377 7.63442 7.73730 8.01889 8.47043 8.56349 9.13372 9.50130 10.00388 10.71684 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011205 B = 0.003021 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.307003 B = 9266.818117 C =10581.623971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.046 3.954 5 C 0.523 3.477 6 O -0.523 6.523 7 N -0.696 5.696 8 C 0.196 3.804 9 C 0.064 3.936 10 O -0.570 6.570 11 C -0.118 4.118 12 C -0.111 4.111 13 C 0.038 3.962 14 N -0.505 5.505 15 C 0.043 3.957 16 C 0.408 3.592 17 O -0.595 6.595 18 N -0.556 5.556 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.898 5.898 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.024 3.976 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.395 0.605 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.375 0.625 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.393 0.607 48 H 0.272 0.728 49 H 0.088 0.912 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -17.041 -14.307 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.281 6.281 4 C -0.034 4.034 5 C 0.308 3.692 6 O -0.398 6.398 7 N -0.348 5.348 8 C 0.110 3.890 9 C -0.015 4.015 10 O -0.374 6.374 11 C -0.156 4.156 12 C -0.149 4.149 13 C -0.090 4.090 14 N -0.228 5.228 15 C -0.089 4.089 16 C 0.194 3.806 17 O -0.483 6.483 18 N -0.191 5.191 19 C -0.431 4.431 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.538 5.538 23 Si 0.756 3.244 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.104 4.104 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.229 0.771 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.221 0.779 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.106 0.894 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.508 -16.681 -14.264 22.091 hybrid contribution 0.168 1.245 0.430 1.328 sum 2.676 -15.436 -13.834 20.900 Atomic orbital electron populations 1.21726 0.93500 1.02073 1.03533 1.22518 0.95938 0.83640 0.99968 1.88039 1.18678 1.25997 1.95377 1.22184 0.83750 0.95398 1.02083 1.19948 0.82768 0.90075 0.76383 1.90660 1.49590 1.51334 1.48225 1.45558 1.06408 1.08186 1.74640 1.20373 0.94805 0.80435 0.93368 1.22605 0.99613 0.94939 0.84375 1.86393 1.77371 1.57916 1.15724 1.21789 0.93143 1.02264 0.98363 1.21552 0.99262 0.99668 0.94454 1.22259 0.88073 1.01633 0.97024 1.62327 1.04536 1.54273 1.01653 1.22021 1.00639 0.92827 0.93406 1.21099 0.85324 0.89924 0.84254 1.90366 1.45605 1.68480 1.43810 1.42067 1.46433 1.09093 1.21505 1.19754 1.31673 0.83525 1.08140 0.87938 1.25293 0.96391 1.00593 0.95590 1.69622 1.34795 1.36866 1.12563 0.85810 0.78121 0.82161 0.78308 1.19268 1.20675 1.20715 1.22745 1.00842 0.99335 0.87521 0.91785 0.91130 0.91559 0.93474 0.93246 0.90961 0.90374 0.77073 0.91400 0.93004 0.77938 0.90393 0.91032 0.91640 0.91956 0.91371 0.91813 0.89457 0.89362 0.77372 0.91821 0.89400 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.51 6.66 37.16 0.25 0.75 16 3 O -0.36 -4.78 9.88 -55.14 -0.54 -5.32 16 4 C 0.05 0.50 6.42 36.00 0.23 0.73 16 5 C 0.52 7.48 7.32 -10.99 -0.08 7.40 16 6 O -0.52 -9.69 12.80 -14.35 -0.18 -9.87 16 7 N -0.70 -8.64 4.39 -47.53 -0.21 -8.85 16 8 C 0.20 2.78 0.45 -131.73 -0.06 2.72 16 9 C 0.06 0.89 5.69 37.16 0.21 1.10 16 10 O -0.57 -6.76 13.02 -35.23 -0.46 -7.22 16 11 C -0.12 -1.48 4.69 -26.60 -0.12 -1.61 16 12 C -0.11 -1.35 5.91 -26.65 -0.16 -1.51 16 13 C 0.04 0.60 5.09 -3.83 -0.02 0.58 16 14 N -0.51 -8.46 4.71 -236.12 -1.11 -9.57 16 15 C 0.04 0.79 5.86 -4.98 -0.03 0.76 16 16 C 0.41 9.44 7.20 -10.99 -0.08 9.36 16 17 O -0.60 -15.09 11.20 5.55 0.06 -15.02 16 18 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.02 0.42 3.48 -3.84 -0.01 0.41 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.40 3.88 7.60 -40.82 -0.31 3.57 16 36 H 0.07 1.08 6.41 -51.93 -0.33 0.75 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.37 2.96 9.12 45.56 0.42 3.38 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.67 7.12 -51.93 -0.37 0.30 16 43 H 0.07 1.30 6.00 -51.93 -0.31 0.99 16 44 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 45 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 46 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 47 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.09 1.76 6.06 -51.93 -0.31 1.45 16 50 H 0.09 1.93 5.36 -51.93 -0.28 1.65 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -33.86 394.07 -7.83 -41.69 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -7.23 Total: 18.24 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 0.27 Total: 11.85 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.65 Total: -56.35 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.12 Total: -37.44 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.86 -7.83 -41.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724631769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.309 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds