Wall clock time and date at job start Wed Apr 1 2020 02:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46933 * 2 1 4 4 C 1.42903 * 114.00256 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47237 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00366 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99752 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99804 * 184.72397 * 7 5 4 9 9 C 1.52997 * 109.50612 * 296.61626 * 8 7 5 10 10 O 1.42902 * 109.46742 * 305.21057 * 9 8 7 11 11 C 1.53124 * 109.50129 * 176.53532 * 8 7 5 12 12 C 1.53122 * 109.15940 * 297.71675 * 11 8 7 13 13 C 1.53039 * 109.27838 * 302.34698 * 12 11 8 14 14 N 1.46850 * 109.52611 * 59.17819 * 13 12 11 15 15 C 1.46890 * 111.00060 * 174.16048 * 14 13 12 16 16 C 1.50705 * 109.47348 * 66.04731 * 15 14 13 17 17 O 1.21292 * 119.99723 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00144 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00009 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99730 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00124 * 179.72928 * 19 18 16 22 22 N 1.31414 * 119.99816 * 0.27015 * 21 19 18 23 23 Si 1.86799 * 120.00126 * 180.27685 * 21 19 18 24 24 H 1.48498 * 109.47025 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47275 * 119.99430 * 23 21 19 26 26 H 1.48503 * 109.46862 * 239.99490 * 23 21 19 27 27 C 1.46841 * 111.19620 * 298.26064 * 14 13 12 28 28 H 1.09001 * 109.47364 * 60.00039 * 1 2 3 29 29 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47328 * 300.00035 * 1 2 3 31 31 H 1.09004 * 109.47077 * 240.00638 * 2 1 3 32 32 H 1.08993 * 109.47062 * 120.00047 * 2 1 3 33 33 H 1.08998 * 109.46650 * 60.00173 * 4 3 2 34 34 H 1.08996 * 109.47191 * 300.00700 * 4 3 2 35 35 H 0.96996 * 119.99993 * 4.73185 * 7 5 4 36 36 H 1.09000 * 109.47301 * 65.20963 * 9 8 7 37 37 H 1.08997 * 109.47183 * 185.21619 * 9 8 7 38 38 H 0.96705 * 113.99782 * 180.02562 * 10 9 8 39 39 H 1.08998 * 109.52108 * 177.81266 * 11 8 7 40 40 H 1.09000 * 109.57212 * 57.64966 * 11 8 7 41 41 H 1.08995 * 109.50236 * 182.40804 * 12 11 8 42 42 H 1.08998 * 109.50595 * 62.28668 * 12 11 8 43 43 H 1.09007 * 109.46186 * 299.16487 * 13 12 11 44 44 H 1.09001 * 109.45387 * 179.19570 * 13 12 11 45 45 H 1.09003 * 109.47470 * 306.04828 * 15 14 13 46 46 H 1.08995 * 109.47267 * 186.04999 * 15 14 13 47 47 H 0.96998 * 120.00505 * 0.02562 * 18 16 15 48 48 H 0.97000 * 119.99953 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.46309 * 181.75649 * 27 14 13 50 50 H 1.08994 * 109.46443 * 301.72442 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8193 2.9163 0.0012 6 8 2.9609 3.7730 0.0006 7 7 5.1208 3.2664 0.0013 8 6 5.4996 4.6777 0.1063 9 6 4.9801 5.4384 -1.1153 10 8 5.4517 4.8055 -2.3065 11 6 7.0251 4.7941 0.1704 12 6 7.5312 4.0806 1.4271 13 6 6.8661 4.6963 2.6602 14 7 5.4080 4.5591 2.5513 15 6 4.7433 5.0143 3.7796 16 6 4.9525 6.4977 3.9440 17 8 5.5929 7.1149 3.1192 18 7 4.4281 7.1385 5.0073 19 6 4.6180 8.4881 5.1565 20 1 5.1882 9.0376 4.4221 21 6 4.0727 9.1498 6.2499 22 7 3.3793 8.4810 7.1437 23 14 4.3248 10.9899 6.4491 24 1 5.1359 11.5038 5.3163 25 1 3.0057 11.6716 6.4634 26 1 5.0339 11.2569 7.7263 27 6 4.8934 5.2761 1.3777 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8339 0.9766 -0.8892 34 1 3.8333 0.9768 0.8907 35 1 5.8066 2.5841 -0.0684 36 1 3.8901 5.4349 -1.1090 37 1 5.3403 6.4667 -1.0832 38 1 5.1606 5.2357 -3.1222 39 1 7.3088 5.8458 0.2094 40 1 7.4641 4.3309 -0.7133 41 1 8.6125 4.1966 1.5008 42 1 7.2813 3.0212 1.3697 43 1 7.1276 5.7526 2.7246 44 1 7.2136 4.1809 3.5555 45 1 5.1661 4.4906 4.6371 46 1 3.6760 4.8029 3.7149 47 1 3.9164 6.6449 5.6671 48 1 2.9983 8.9429 7.9068 49 1 3.8081 5.1820 1.3417 50 1 5.1642 6.3295 1.4481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724631769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:34 Heat of formation + Delta-G solvation = -185.366895 kcal Electronic energy + Delta-G solvation = -32173.785242 eV Core-core repulsion = 27814.214388 eV Total energy + Delta-G solvation = -4359.570854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.78951 -40.48702 -39.26587 -38.21114 -37.48392 -36.08758 -35.23998 -33.56675 -33.24435 -32.53368 -31.66648 -29.01135 -28.18842 -26.81815 -26.55662 -24.18465 -23.64522 -22.84829 -21.79772 -21.09258 -20.31208 -19.80237 -18.39344 -18.24661 -17.85449 -17.63126 -17.29916 -16.89437 -16.50237 -16.43841 -16.05391 -15.86795 -15.73546 -15.63924 -15.47692 -15.07939 -14.80632 -14.40280 -14.14567 -13.90616 -13.81999 -13.67125 -13.48448 -13.30900 -13.17789 -13.13469 -13.00512 -12.65550 -12.48480 -12.45872 -12.26072 -12.15303 -12.11634 -11.83144 -11.50390 -11.43370 -11.39538 -11.10261 -10.96367 -10.59217 -10.34991 -10.03798 -9.86736 -9.00587 -8.49077 -5.99510 1.31884 1.37562 1.51599 1.76953 1.94087 1.98241 2.25905 2.80310 3.11958 3.16172 3.22198 3.41951 3.64227 3.83144 3.94907 4.09337 4.19791 4.23770 4.24198 4.33907 4.37074 4.39418 4.41409 4.49989 4.51202 4.53877 4.59248 4.61376 4.68081 4.84363 4.85337 4.92136 5.03173 5.05739 5.07630 5.11808 5.21997 5.28964 5.36508 5.43408 5.64115 5.86901 6.02231 6.14325 6.20315 6.54538 6.76880 6.79619 7.07754 7.44889 7.50714 8.04979 8.66530 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011205 B = 0.003021 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.307003 B = 9266.818117 C =10581.623971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.403 6.403 4 C 0.050 3.950 5 C 0.514 3.486 6 O -0.574 6.574 7 N -0.681 5.681 8 C 0.199 3.801 9 C 0.072 3.928 10 O -0.567 6.567 11 C -0.111 4.111 12 C -0.103 4.103 13 C 0.036 3.964 14 N -0.490 5.490 15 C 0.050 3.950 16 C 0.409 3.591 17 O -0.618 6.618 18 N -0.570 5.570 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.269 1.269 27 C 0.035 3.965 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.413 0.587 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.393 0.607 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.029 0.971 44 H 0.077 0.923 45 H 0.114 0.886 46 H 0.091 0.909 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.059 0.941 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.188 -19.535 -14.967 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.323 6.323 4 C -0.029 4.029 5 C 0.301 3.699 6 O -0.453 6.453 7 N -0.334 5.334 8 C 0.112 3.888 9 C -0.007 4.007 10 O -0.374 6.374 11 C -0.149 4.149 12 C -0.140 4.140 13 C -0.092 4.092 14 N -0.212 5.212 15 C -0.082 4.082 16 C 0.196 3.804 17 O -0.506 6.506 18 N -0.207 5.207 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.194 1.194 27 C -0.094 4.094 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.250 0.750 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.242 0.758 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.096 0.904 45 H 0.132 0.868 46 H 0.109 0.891 47 H 0.228 0.772 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.957 -19.227 -14.947 24.673 hybrid contribution -0.281 1.973 0.549 2.067 sum 3.676 -17.254 -14.398 22.771 Atomic orbital electron populations 1.21779 0.93594 1.03386 1.02212 1.22747 0.95984 0.82181 1.01658 1.87997 1.19966 1.28573 1.95750 1.22271 0.83203 0.92768 1.04706 1.20728 0.82581 0.91429 0.75159 1.90652 1.51040 1.53102 1.50511 1.45387 1.06585 1.07675 1.73746 1.20161 0.95735 0.81400 0.91477 1.22344 0.97972 0.94989 0.85432 1.86330 1.77149 1.57994 1.15902 1.21746 0.91593 1.01693 0.99841 1.21551 1.00121 1.00480 0.91875 1.22344 0.87162 0.99840 0.99852 1.62429 1.05367 1.52847 1.00527 1.22084 1.01434 0.89341 0.95325 1.22068 0.83571 0.91848 0.82869 1.90379 1.46127 1.69790 1.44303 1.42149 1.47483 1.08583 1.22440 1.19686 1.33012 0.84867 1.08620 0.90366 1.26069 0.95700 1.04731 0.94841 1.69685 1.35015 1.38434 1.12863 0.84878 0.78278 0.76908 0.78309 1.19821 1.19729 1.19366 1.22486 0.99380 0.97653 0.89902 0.92814 0.88479 0.93178 0.91362 0.91775 0.87659 0.87980 0.74980 0.94014 0.93360 0.75781 0.92143 0.88587 0.89440 0.89417 0.95306 0.90415 0.86800 0.89068 0.77160 0.91257 0.92269 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.40 -10.15 9.88 -129.94 -1.28 -11.43 16 4 C 0.05 0.96 6.42 71.23 0.46 1.42 16 5 C 0.51 14.16 7.32 87.66 0.64 14.80 16 6 O -0.57 -21.91 12.80 16.00 0.20 -21.70 16 7 N -0.68 -15.57 4.39 -422.67 -1.86 -17.43 16 8 C 0.20 5.54 0.45 3.66 0.00 5.55 16 9 C 0.07 2.04 5.69 71.98 0.41 2.45 16 10 O -0.57 -12.57 13.02 -148.98 -1.94 -14.51 16 11 C -0.11 -2.59 4.69 30.68 0.14 -2.45 16 12 C -0.10 -2.18 5.91 30.65 0.18 -2.00 16 13 C 0.04 1.08 5.09 86.33 0.44 1.52 16 14 N -0.49 -16.24 4.71 -900.95 -4.24 -20.48 16 15 C 0.05 1.86 5.86 85.56 0.50 2.36 16 16 C 0.41 19.68 7.20 87.66 0.63 20.31 16 17 O -0.62 -32.99 11.20 -3.07 -0.03 -33.03 16 18 N -0.57 -29.99 5.29 -306.98 -1.62 -31.62 16 19 C -0.33 -19.15 9.68 84.04 0.81 -18.33 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 23 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 C 0.03 1.28 3.48 86.33 0.30 1.58 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.41 6.53 7.60 -92.71 -0.70 5.82 16 36 H 0.04 1.40 6.41 -2.39 -0.02 1.39 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.39 5.61 9.12 -74.05 -0.68 4.94 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 1.84 7.90 -2.39 -0.02 1.82 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.47 7.12 -2.39 -0.02 1.45 16 43 H 0.03 1.12 6.00 -2.38 -0.01 1.10 16 44 H 0.08 2.13 8.06 -2.39 -0.02 2.11 16 45 H 0.11 3.64 8.06 -2.39 -0.02 3.62 16 46 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 47 H 0.39 20.02 7.90 -92.71 -0.73 19.29 16 48 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 49 H 0.06 2.52 6.06 -2.39 -0.01 2.51 16 50 H 0.05 2.39 5.36 -2.39 -0.01 2.38 16 Total: -1.00 -78.05 394.07 -3.38 -81.43 By element: Atomic # 1 Polarization: 47.93 SS G_CDS: -1.13 Total: 46.80 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: 6.21 Total: 26.58 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -7.44 Total: -119.90 kcal Atomic # 8 Polarization: -77.62 SS G_CDS: -3.05 Total: -80.67 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -78.05 -3.38 -81.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724631769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.932 kcal (2) G-P(sol) polarization free energy of solvation -78.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds