Wall clock time and date at job start Wed Apr 1 2020 02:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00266 * 2 1 4 4 C 1.50706 * 109.47016 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00020 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99702 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99931 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.47155 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.46946 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00042 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99779 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99761 * 184.75903 * 11 9 8 13 13 C 1.52991 * 109.52482 * 301.07550 * 12 11 9 14 14 O 1.42900 * 109.47396 * 304.84043 * 13 12 11 15 15 C 1.53353 * 109.47639 * 61.37588 * 12 11 9 16 16 C 1.53043 * 109.61163 * 58.54454 * 15 12 11 17 17 C 1.53197 * 109.30657 * 61.37557 * 16 15 12 18 18 N 1.46927 * 108.77675 * 305.36567 * 17 16 15 19 19 C 1.36938 * 120.62858 * 233.58681 * 18 17 16 20 20 H 1.07999 * 119.99581 * 151.43192 * 19 18 17 21 21 C 1.38817 * 120.00295 * 331.43455 * 19 18 17 22 22 N 1.31622 * 119.99678 * 344.98670 * 21 19 18 23 23 Si 1.86794 * 120.00099 * 164.98807 * 21 19 18 24 24 H 1.48499 * 109.47064 * 89.99798 * 23 21 19 25 25 H 1.48504 * 109.47105 * 209.99803 * 23 21 19 26 26 H 1.48501 * 109.47027 * 329.99660 * 23 21 19 27 27 C 1.46918 * 118.73689 * 53.61445 * 18 17 16 28 28 H 1.08993 * 109.47237 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46729 * 300.00072 * 1 2 3 30 30 H 1.09002 * 109.47099 * 59.99515 * 1 2 3 31 31 H 1.09001 * 109.47209 * 60.00125 * 3 2 1 32 32 H 1.08996 * 109.46853 * 299.99975 * 3 2 1 33 33 H 0.96997 * 120.00032 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47021 * 59.99754 * 7 6 4 35 35 H 1.09003 * 109.47401 * 300.00767 * 7 6 4 36 36 H 1.08992 * 109.47293 * 60.00136 * 8 7 6 37 37 H 1.09005 * 109.47236 * 299.99634 * 8 7 6 38 38 H 0.96998 * 119.99869 * 4.75105 * 11 9 8 39 39 H 1.09002 * 109.47257 * 64.84271 * 13 12 11 40 40 H 1.09006 * 109.47047 * 184.83662 * 13 12 11 41 41 H 0.96698 * 114.00042 * 180.02562 * 14 13 12 42 42 H 1.09009 * 109.41570 * 298.51035 * 15 12 11 43 43 H 1.09001 * 109.42590 * 178.59188 * 15 12 11 44 44 H 1.09000 * 109.49769 * 301.43201 * 16 15 12 45 45 H 1.09000 * 109.52868 * 181.34493 * 16 15 12 46 46 H 1.09008 * 109.57999 * 185.57990 * 17 16 15 47 47 H 1.09000 * 109.70364 * 65.23103 * 17 16 15 48 48 H 0.96997 * 119.99666 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.59113 * 66.17418 * 27 18 17 50 50 H 1.09007 * 109.58535 * 186.46168 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2766 2.2967 0.0002 7 6 5.7370 2.1810 0.0003 8 6 6.3593 3.5787 0.0004 9 6 7.8616 3.4596 -0.0002 10 8 8.3832 2.3646 -0.0002 11 7 8.6256 4.5699 0.0003 12 6 10.0824 4.4567 -0.1055 13 6 10.6158 3.6170 1.0569 14 8 10.1804 4.1848 2.2939 15 6 10.4479 3.7880 -1.4363 16 6 9.8867 4.6128 -2.5968 17 6 10.5108 6.0117 -2.5724 18 7 10.2885 6.6056 -1.2470 19 6 9.7014 7.8365 -1.1236 20 1 9.1314 8.0766 -0.2382 21 6 9.8387 8.7757 -2.1366 22 7 10.7562 8.6119 -3.0659 23 14 8.7214 10.2720 -2.1806 24 1 9.3444 11.3779 -1.4099 25 1 8.5230 10.7004 -3.5886 26 1 7.4085 9.9273 -1.5784 27 6 10.7088 5.8539 -0.0566 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8595 3.1724 -0.0001 34 1 6.0586 1.6397 -0.8895 35 1 6.0586 1.6403 0.8904 36 1 6.0377 4.1195 0.8903 37 1 6.0378 4.1197 -0.8896 38 1 8.2109 5.4439 0.0707 39 1 10.2385 2.5979 0.9721 40 1 11.7053 3.6047 1.0262 41 1 10.4827 3.7029 3.0758 42 1 10.0240 2.7841 -1.4659 43 1 11.5326 3.7268 -1.5253 44 1 8.8046 4.6954 -2.4946 45 1 10.1267 4.1238 -3.5409 46 1 10.0423 6.6341 -3.3349 47 1 11.5810 5.9401 -2.7660 48 1 10.8524 9.2683 -3.7735 49 1 11.7951 5.7671 -0.0440 50 1 10.3732 6.3735 0.8409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724641286.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:35 Heat of formation + Delta-G solvation = -143.045747 kcal Electronic energy + Delta-G solvation = -31312.795909 eV Core-core repulsion = 26955.060237 eV Total energy + Delta-G solvation = -4357.735672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.25084 -39.83308 -37.90492 -37.51827 -36.04114 -35.21938 -33.88562 -32.40339 -31.39772 -30.54579 -29.84774 -28.74589 -26.29585 -25.46492 -25.08755 -23.82208 -22.21868 -21.07868 -20.92115 -20.03067 -18.72031 -17.67771 -17.14930 -16.98580 -16.77905 -16.70505 -16.68266 -15.82349 -15.44613 -15.27434 -14.90643 -14.74053 -14.59638 -14.15733 -13.98544 -13.77887 -13.36825 -13.25029 -13.16384 -12.88124 -12.72690 -12.52322 -12.34746 -11.99731 -11.92464 -11.85937 -11.52895 -11.47043 -11.18391 -11.07826 -10.78988 -10.45158 -10.21712 -10.20874 -10.15334 -10.03492 -9.84937 -9.73745 -9.56111 -9.28191 -9.07478 -8.54366 -8.48922 -6.74160 -5.85949 -3.31236 2.39893 2.49853 2.94931 3.30798 3.37675 3.38820 3.51331 3.82590 4.40316 4.41180 4.50278 4.65911 4.73718 4.74644 4.91463 4.95612 4.99851 5.01599 5.26843 5.28923 5.33085 5.37499 5.54271 5.59898 5.67406 5.77308 5.80162 5.89858 5.94009 6.04218 6.17364 6.26864 6.36875 6.45847 6.57078 6.61762 6.66638 6.77482 6.85386 7.07326 7.23303 7.34744 7.62657 7.71282 7.86314 8.00135 8.02083 8.36983 8.61165 9.13206 9.75455 10.32571 11.21838 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.002597 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.575719 B =10779.900486 C =12240.743803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.511 3.489 5 O -0.516 6.516 6 N -0.731 5.731 7 C 0.139 3.861 8 C -0.155 4.155 9 C 0.520 3.480 10 O -0.552 6.552 11 N -0.686 5.686 12 C 0.167 3.833 13 C 0.065 3.935 14 O -0.566 6.566 15 C -0.119 4.119 16 C -0.136 4.136 17 C 0.169 3.831 18 N -0.589 5.589 19 C -0.255 4.255 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.903 3.097 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.147 3.853 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.401 0.599 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.407 0.593 39 H 0.067 0.933 40 H 0.044 0.956 41 H 0.370 0.630 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.088 0.912 47 H 0.017 0.983 48 H 0.254 0.746 49 H 0.031 0.969 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.284 -10.086 6.823 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.296 3.704 5 O -0.390 6.390 6 N -0.385 5.385 7 C 0.016 3.984 8 C -0.196 4.196 9 C 0.306 3.694 10 O -0.431 6.431 11 N -0.336 5.336 12 C 0.079 3.921 13 C -0.014 4.014 14 O -0.370 6.370 15 C -0.157 4.157 16 C -0.175 4.175 17 C 0.043 3.957 18 N -0.311 5.311 19 C -0.385 4.385 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.544 5.544 23 Si 0.733 3.267 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.020 3.980 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.242 0.758 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.215 0.785 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.035 0.965 48 H 0.064 0.936 49 H 0.048 0.952 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.639 -11.263 6.238 18.756 hybrid contribution -0.778 1.670 0.253 1.860 sum -14.416 -9.592 6.491 18.493 Atomic orbital electron populations 1.22848 0.80308 1.03384 1.00151 1.88028 1.19829 1.25184 1.95426 1.22245 0.91653 0.87072 1.02708 1.20222 0.88620 0.84617 0.76958 1.90764 1.74573 1.26449 1.47231 1.45892 1.07443 1.08712 1.76459 1.21029 0.77338 0.95958 1.04077 1.21808 0.94149 0.98548 1.05090 1.20077 0.88436 0.84689 0.76244 1.90624 1.74726 1.26821 1.50951 1.45758 1.06730 1.08837 1.72252 1.21020 0.79933 0.98415 0.92735 1.22685 0.97141 0.97714 0.83889 1.86487 1.78406 1.56697 1.15374 1.21784 1.00575 0.99386 0.93995 1.22099 1.00538 0.98955 0.95909 1.20841 0.96818 0.89444 0.88595 1.44061 1.70057 1.17185 0.99809 1.19129 1.24872 0.89601 1.04872 0.91678 1.25086 0.97584 0.97453 0.99351 1.70015 1.32324 1.36155 1.15943 0.86295 0.80520 0.82970 0.76891 1.21422 1.21645 1.20507 1.21094 0.95938 0.88999 0.91976 0.89052 0.93779 0.93738 0.90164 0.90105 0.76551 0.90417 0.90512 0.88478 0.88218 0.75798 0.91455 0.93790 0.78481 0.91486 0.91987 0.92839 0.93261 0.89357 0.96451 0.93573 0.95168 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.90 10.24 -55.14 -0.56 -4.47 16 3 C 0.04 0.34 6.42 36.01 0.23 0.57 16 4 C 0.51 5.94 7.91 -10.98 -0.09 5.86 16 5 O -0.52 -8.77 16.50 -14.35 -0.24 -9.00 16 6 N -0.73 -6.70 5.56 -60.30 -0.33 -7.04 16 7 C 0.14 1.64 4.96 -4.05 -0.02 1.62 16 8 C -0.16 -1.66 5.82 -27.88 -0.16 -1.82 16 9 C 0.52 7.76 7.24 -10.98 -0.08 7.68 16 10 O -0.55 -9.69 12.32 5.56 0.07 -9.62 16 11 N -0.69 -10.90 3.96 -47.35 -0.19 -11.09 16 12 C 0.17 2.86 0.46 -131.54 -0.06 2.80 16 13 C 0.06 1.00 5.62 37.15 0.21 1.20 16 14 O -0.57 -8.22 13.07 -35.23 -0.46 -8.68 16 15 C -0.12 -2.08 4.51 -26.53 -0.12 -2.20 16 16 C -0.14 -2.56 5.93 -26.61 -0.16 -2.72 16 17 C 0.17 3.83 5.29 -3.71 -0.02 3.81 16 18 N -0.59 -13.59 2.88 -172.31 -0.50 -14.08 16 19 C -0.26 -6.45 9.59 -15.06 -0.14 -6.59 16 20 H 0.07 1.60 7.87 -52.49 -0.41 1.19 16 21 C 0.00 0.11 4.96 -17.43 -0.09 0.02 16 22 N -0.90 -25.01 11.10 55.49 0.62 -24.39 16 23 Si 0.90 20.51 29.58 -169.99 -5.03 15.48 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.15 2.93 5.05 -3.71 -0.02 2.91 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 2.21 8.47 -40.82 -0.35 1.86 16 34 H 0.08 1.09 8.10 -51.93 -0.42 0.66 16 35 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.41 6.53 8.45 -40.82 -0.34 6.18 16 39 H 0.07 1.10 6.11 -51.93 -0.32 0.78 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.37 3.70 9.12 45.56 0.42 4.11 16 42 H 0.07 1.20 6.48 -51.92 -0.34 0.86 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.02 7.54 -51.93 -0.39 0.63 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.09 2.26 6.03 -51.92 -0.31 1.95 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 49 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 1.35 7.77 -51.93 -0.40 0.95 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -34.80 401.35 -7.48 -42.28 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.50 Total: 10.11 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 0.60 Total: 14.44 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.40 Total: -56.60 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.19 Total: -31.77 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.80 -7.48 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724641286.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.765 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds